genome.fa.s23.2.7.7.80.10.50.1000.170.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  170  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51050773--51050903	46	2.8	46	93	2	210	29	25	10	35	1.89
51052136--51052183	17	2.9	17	90	3	71	54	18	0	27	1.44
51071205--51071238	16	2.1	15	89	10	50	67	0	5	26	1.13
51077494--51077712	106	2.0	109	85	7	302	28	12	20	38	1.89
51080319--51080528	107	2.0	107	95	0	375	40	11	11	35	1.79
51080926--51081045	38	3.2	38	97	0	222	45	14	18	21	1.84
51084395--51084438	18	2.5	17	79	20	54	61	6	2	29	1.34
51098609--51098633	11	2.3	11	100	0	50	60	8	8	24	1.52
51107086--51107179	30	3.2	29	71	8	84	23	17	9	50	1.75
51110041--51110127	30	2.9	31	77	3	79	29	21	5	42	1.76
51111975--51112064	44	2.0	44	81	8	103	58	4	6	30	1.43
51123983--51124036	16	3.4	16	84	0	54	57	0	25	16	1.40
51130731--51130770	21	1.9	21	90	10	64	27	5	20	47	1.70
51134965--51135106	70	2.0	70	95	0	257	29	15	17	37	1.91
51143589--51143629	21	2.0	21	85	9	57	53	4	2	39	1.35
51146433--51146490	31	1.9	31	89	3	91	36	10	6	46	1.65
51146960--51147080	43	2.8	43	89	0	179	33	26	19	21	1.97
51146945--51147104	43	3.7	43	75	5	144	31	23	21	23	1.98
51152804--51152868	17	3.6	17	74	11	67	38	43	1	16	1.58
51152728--51152903	37	4.8	37	81	11	175	39	40	1	18	1.60
51152835--51152888	14	3.7	14	75	15	56	38	42	1	16	1.59
51153096--51153360	114	2.3	114	90	1	406	26	26	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51153292--51153401	41	2.7	41	85	2	132	29	29	21	20	1.98
51153178--51153515	155	2.2	155	88	2	491	28	26	22	23	1.99
51153333--51153696	114	3.2	112	87	4	520	28	25	21	24	1.99
51153596--51153768	73	2.4	72	90	0	265	27	25	21	26	1.99
51153492--51153882	186	2.1	181	90	3	622	27	25	20	26	1.99
51153669--51153989	114	2.9	111	87	4	452	27	26	21	24	1.99
51155825--51155859	16	2.1	17	89	5	54	42	0	2	54	1.15
51157722--51157803	3	27.0	3	76	11	60	26	4	3	64	1.30
51157761--51157806	19	2.5	19	89	3	67	26	0	8	65	1.21
51161907--51161943	17	2.1	18	90	5	58	29	24	0	45	1.53
51162668--51162702	10	3.7	9	85	14	52	85	0	14	0	0.59
51162668--51162709	17	2.5	17	77	14	50	83	0	16	0	0.65
51163511--51163547	10	3.5	10	86	13	56	78	0	10	10	0.97
51164773--51165263	44	11.2	43	64	17	170	27	24	23	25	2.00
51164768--51165370	88	6.9	88	91	0	904	26	23	24	25	2.00
51165237--51165380	43	3.3	43	67	7	119	27	23	25	22	2.00
51165361--51165641	132	2.1	132	88	1	420	31	17	24	25	1.97
51167027--51167107	3	26.7	3	75	12	58	25	4	3	65	1.30
51167418--51167482	22	2.9	22	78	13	62	18	4	7	69	1.31
51167589--51167903	111	2.9	109	87	2	468	31	15	18	35	1.92
51169943--51170011	34	2.0	34	94	0	120	37	10	15	36	1.82
51175440--51175466	13	2.1	13	100	0	54	37	0	14	48	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51176678--51176785	42	2.5	42	79	4	110	25	17	25	31	1.97
51178545--51178569	13	1.9	13	100	0	50	40	24	4	32	1.73
51179894--51180120	41	5.5	41	92	2	366	25	26	19	28	1.99
51179893--51180148	123	2.1	123	85	2	354	26	26	17	28	1.98
51181902--51181958	28	2.0	28	93	6	98	36	5	0	57	1.21
51181902--51181955	14	3.8	14	76	11	56	37	5	0	57	1.22
51182150--51182178	14	2.0	15	93	6	51	51	20	0	27	1.47
51183458--51183507	26	1.9	26	88	8	75	34	26	14	26	1.94
51187969--51188154	41	4.5	41	91	0	282	24	25	19	29	1.99
51189934--51189990	28	2.0	28	93	6	98	36	5	0	57	1.21
51189934--51189987	14	3.8	14	76	11	56	37	5	0	57	1.22
51190182--51190210	14	2.0	15	93	6	51	51	20	0	27	1.47
51197728--51197903	49	3.6	48	78	9	142	26	20	27	26	1.99
51198415--51198528	49	2.3	50	83	3	142	25	28	20	26	1.99
51202072--51202096	11	2.3	11	100	0	50	68	16	0	16	1.22
51205333--51205394	29	2.1	29	85	5	81	62	1	1	33	1.14
51207506--51207629	60	2.1	60	84	0	158	36	18	8	36	1.82
51208398--51208435	18	2.2	18	90	4	60	18	23	0	57	1.40
51214063--51214104	21	2.0	22	85	4	59	59	9	2	28	1.41
51221311--51221346	13	2.8	13	95	0	63	44	0	0	55	0.99
51226344--51226489	43	3.4	43	83	4	161	29	17	22	30	1.96
51228713--51228797	43	2.0	43	100	0	170	25	18	14	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51230108--51230184	3	26.0	3	74	7	50	57	0	10	32	1.33
51231273--51231324	19	2.8	19	80	11	56	17	0	9	73	1.09
51232200--51232258	26	2.3	27	80	14	70	62	3	0	33	1.12
51232215--51232275	26	2.3	26	80	5	70	59	1	0	39	1.08
51257260--51257888	155	4.1	154	82	4	700	34	11	14	38	1.82
51257260--51257888	309	2.0	306	83	3	798	34	11	14	38	1.82
51258520--51258565	13	3.8	13	76	23	55	58	0	0	41	0.98
51258520--51258572	24	2.3	22	84	15	72	60	0	0	39	0.97
51258520--51258571	8	6.2	9	75	20	51	59	0	0	40	0.97
51258521--51258567	18	2.8	18	78	18	57	59	0	0	40	0.97
51258520--51258576	23	2.5	24	88	11	84	59	0	0	40	0.97
51260711--51260773	20	3.2	20	82	11	67	47	15	6	30	1.71
51262303--51262360	29	2.0	29	83	6	73	50	3	0	46	1.18
51286584--51286630	12	3.9	12	75	10	51	68	17	8	6	1.37
51286584--51286634	24	2.1	24	81	0	75	66	19	7	5	1.38
51291445--51291475	10	3.0	10	95	4	53	87	3	9	0	0.66
51296433--51296514	4	20.5	4	100	0	164	25	0	24	50	1.50
51298587--51298695	54	2.0	54	98	0	209	49	6	12	31	1.66
51299762--51299794	13	2.5	13	95	0	57	75	6	3	15	1.11
51299878--51299919	19	2.2	18	87	8	57	30	2	0	66	1.04
51301824--51301876	23	2.3	23	83	0	70	13	22	13	50	1.75
51313139--51313198	25	2.3	27	88	8	90	36	15	11	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51318864--51318979	42	2.7	43	80	4	128	31	28	16	23	1.96
51321177--51321249	19	3.7	19	70	24	62	46	1	0	52	1.09
51321259--51321295	16	2.3	17	81	13	51	54	0	5	40	1.24
51322459--51322508	21	2.4	21	80	6	57	18	34	22	26	1.96
51325381--51325466	42	2.0	42	90	0	136	30	31	16	22	1.95
51326538--51326643	53	2.0	53	86	0	149	25	29	28	16	1.97
51327682--51327715	17	2.0	17	94	0	59	29	8	35	26	1.87
51332550--51332618	27	2.6	26	77	6	75	20	27	15	36	1.93
51332830--51332956	45	2.8	44	82	3	155	22	21	12	44	1.85
51335559--51335630	19	3.8	19	78	10	67	13	1	25	59	1.43
51336312--51336369	25	2.4	24	80	11	64	15	3	27	53	1.58
51336325--51336376	25	2.1	25	82	7	61	15	5	26	51	1.65
51338674--51338723	25	2.0	26	88	4	75	20	2	22	56	1.53
51338674--51338733	25	2.3	25	82	5	66	18	1	26	53	1.54
51338716--51338762	20	2.4	20	78	3	60	14	0	27	57	1.38
51339472--51339505	12	2.7	13	86	4	52	14	5	32	47	1.69
51348803--51348835	16	2.1	16	100	0	66	24	18	18	39	1.92
51355476--51355528	25	2.1	25	92	0	88	28	13	37	20	1.90
51357916--51357963	16	3.1	15	77	17	53	39	22	4	33	1.74
51358734--51358766	12	2.6	13	85	9	50	0	24	0	75	0.80
51358732--51358798	26	2.6	26	83	6	84	1	22	2	73	1.06
51361575--51361606	3	10.7	3	100	0	64	0	31	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51364905--51364958	25	2.2	25	83	6	65	48	3	1	46	1.30
51369262--51369421	61	2.6	62	76	5	166	36	5	15	42	1.71
51380460--51380501	6	7.0	6	97	0	75	30	0	2	66	1.04
51382755--51382787	16	2.1	16	88	11	50	45	3	6	45	1.43
51383123--51383181	11	5.4	11	80	11	59	25	32	0	42	1.55
51383123--51383205	22	3.6	22	74	11	78	24	33	1	40	1.63
51397041--51397139	28	3.6	28	86	1	128	31	23	14	31	1.94
51399404--51399437	16	2.1	16	88	0	50	35	20	2	41	1.68
51400797--51400824	4	7.0	4	100	0	56	75	0	0	25	0.81
51408815--51409073	96	2.7	96	90	0	385	37	2	18	41	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228