genome.fa.s23.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  23  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7441172--7441287	40	2.9	41	78	5	121	32	22	26	18	1.97
7441344--7441541	41	4.8	41	80	2	227	17	24	23	33	1.96
7441343--7441541	82	2.4	82	86	0	272	17	25	23	33	1.96
7441343--7441564	82	2.7	82	84	1	221	17	24	22	35	1.95
7441342--7441581	41	5.9	41	73	11	179	18	25	22	33	1.96
7441344--7441581	123	1.9	123	80	3	273	18	24	23	34	1.96
7442085--7442121	14	2.5	15	86	8	58	21	0	40	37	1.54
7442052--7442124	14	5.5	13	73	16	51	23	0	35	41	1.55
7442827--7442903	7	10.4	7	72	15	57	22	0	45	32	1.53
7442823--7442895	36	2.0	36	97	0	137	21	0	43	34	1.53
7446309--7446355	22	2.1	23	77	18	55	42	10	0	46	1.38
7446278--7446354	33	2.3	33	78	10	86	46	9	1	42	1.43
7446320--7446366	21	2.3	22	86	13	66	44	10	0	44	1.38
7446324--7446432	50	2.3	46	77	18	116	44	10	0	44	1.37
7446335--7446429	50	1.9	50	85	8	131	46	10	0	43	1.38
7446440--7446524	30	3.0	27	82	16	86	43	10	0	45	1.38
7446472--7446781	34	9.7	34	75	21	264	48	10	0	40	1.42
7446478--7446643	93	1.8	86	87	8	242	48	10	0	40	1.41
7446668--7447165	9	54.8	9	68	20	98	45	13	0	40	1.46
7446549--7446715	72	2.3	71	95	1	298	49	8	1	40	1.42
7446677--7446772	22	4.5	22	72	18	78	47	10	0	41	1.37
7446767--7446799	16	2.1	16	100	0	66	45	24	0	30	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7446762--7446971	25	8.6	25	70	21	85	45	15	0	38	1.50
7446657--7447196	31	17.8	30	72	18	308	45	12	0	40	1.48
7446938--7446970	16	2.1	16	100	0	66	45	24	0	30	1.53
7446942--7447162	105	2.1	103	94	3	390	44	14	0	41	1.48
7446762--7447391	9	72.2	9	67	21	186	44	14	1	39	1.54
7446568--7447162	136	4.6	136	72	19	282	46	12	0	40	1.46
7447237--7447372	25	5.6	25	75	11	111	44	16	2	36	1.60
7447233--7447347	34	3.2	34	74	15	99	44	17	2	35	1.63
7447268--7447386	16	7.9	16	68	19	87	45	17	2	34	1.62
7459783--7459810	3	9.3	3	100	0	56	67	0	0	32	0.91
7459910--7459940	3	10.0	3	93	6	53	35	0	0	64	0.94
7459809--7460019	111	1.9	111	99	0	413	30	8	17	43	1.79
7460034--7460079	18	2.6	16	81	18	56	45	0	8	45	1.34
7467939--7468044	49	2.2	49	83	6	126	29	12	21	36	1.90
7473308--7473339	16	2.0	16	93	0	55	53	0	0	46	1.00
7473408--7473468	11	5.9	10	78	17	63	39	0	3	57	1.15
7473408--7473453	11	4.2	11	89	8	67	36	0	4	58	1.18
7473406--7473504	42	2.3	43	81	13	125	40	0	3	56	1.15
7473447--7473505	24	2.3	27	85	8	79	44	0	1	54	1.10
7473404--7473532	23	6.2	20	74	15	86	42	0	2	55	1.12
7473473--7473532	21	3.0	19	85	11	68	43	0	1	55	1.10
7473470--7473528	28	2.1	27	84	3	73	44	0	1	54	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7478882--7478920	20	1.9	20	89	5	60	69	0	0	30	0.89
7478994--7479127	61	2.1	65	93	6	231	24	14	17	44	1.85
7480376--7480466	23	4.1	23	72	11	100	45	6	27	20	1.76
7480396--7480479	42	2.0	42	95	0	150	44	9	23	22	1.82
7492013--7492088	33	2.3	33	84	4	91	32	7	0	59	1.26
7495632--7495659	9	3.1	9	100	0	56	46	10	10	32	1.73
7495987--7496017	16	1.9	16	93	0	53	22	35	0	41	1.54
7500658--7500699	21	2.0	21	95	0	75	26	14	21	38	1.91
7501911--7502390	160	3.0	160	98	0	924	45	7	25	21	1.78
7503337--7503395	29	2.0	29	93	0	100	28	10	25	35	1.89
7517721--7517796	23	3.3	23	92	0	134	22	21	26	30	1.99
7522629--7522673	21	2.3	19	84	7	54	44	20	24	11	1.83
7522715--7522954	101	2.4	101	89	0	354	27	25	16	31	1.97
7524869--7524926	11	5.1	11	79	8	62	65	3	0	31	1.09
7526279--7526422	44	3.3	44	95	0	252	38	6	11	43	1.65
7526354--7526421	21	3.1	21	66	22	59	41	5	5	47	1.52
7527588--7527612	12	2.1	12	100	0	50	76	0	24	0	0.80
7528201--7528256	25	2.2	25	100	0	112	46	10	7	35	1.66
7532532--7532757	87	2.5	90	82	4	253	34	19	10	35	1.86
7532911--7532969	19	3.0	19	76	18	59	61	0	5	33	1.18
7532915--7532981	21	3.3	20	80	17	61	65	0	4	29	1.12
7532925--7532998	21	3.6	20	78	8	69	66	0	4	29	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7532956--7532993	12	3.3	12	78	14	53	71	0	5	23	1.07
7532859--7533074	10	22.1	10	68	14	94	64	0	4	30	1.20
7532945--7532993	22	2.3	21	92	3	80	69	0	4	26	1.06
7533063--7533099	19	1.9	19	88	0	56	54	5	8	32	1.53
7533283--7533332	10	5.4	9	83	6	57	32	0	2	66	1.03
7535530--7535617	23	4.0	23	79	5	92	37	22	20	19	1.94
7535940--7535989	25	2.0	25	84	11	66	34	22	0	44	1.53
7536909--7536940	3	10.7	3	93	0	55	68	3	0	28	1.04
7550339--7550378	16	2.4	17	87	8	55	62	15	2	20	1.43
7552864--7552972	42	2.6	44	82	11	138	28	26	16	28	1.97
7571557--7571625	31	2.2	31	89	0	102	43	15	5	34	1.71
7572519--7572578	26	2.3	27	97	2	113	41	8	0	50	1.33
7572735--7572870	4	33.0	4	70	22	54	66	0	31	0	1.02
7572747--7572801	18	2.9	18	74	15	58	61	1	36	0	1.06
7572735--7572881	39	3.9	37	76	17	142	65	0	32	0	1.02
7572725--7572867	36	4.0	36	71	20	113	64	0	34	0	1.04
7572777--7572915	44	3.3	43	76	20	152	65	0	33	0	0.98
7572736--7572898	80	2.1	77	88	7	240	66	0	31	0	1.00
7572843--7572929	24	3.7	23	74	7	86	70	0	29	0	0.88
7572766--7572927	80	2.0	80	85	3	220	67	0	30	0	0.99
7573648--7573703	27	2.1	27	96	0	103	42	14	33	8	1.77
7573963--7573992	16	1.9	15	93	6	51	70	0	3	26	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7576441--7576467	11	2.5	11	100	0	54	37	7	14	40	1.74
7578713--7578757	18	2.5	18	88	0	63	15	46	4	33	1.66
7579549--7579658	3	36.7	3	98	0	211	67	31	0	0	0.97
7579658--7579687	15	1.9	16	93	6	53	66	6	0	26	1.16
7579839--7579864	3	8.7	3	100	0	52	0	34	0	65	0.93
7579913--7580006	27	3.5	26	80	12	100	17	31	25	25	1.97
7579929--7580013	27	3.1	27	87	0	125	14	34	25	25	1.94
7594302--7594348	21	2.2	22	92	3	78	21	19	38	21	1.94
7597760--7597829	29	2.3	29	85	4	86	32	10	14	42	1.78
7597759--7597839	31	2.7	30	82	5	92	30	8	13	46	1.73
7598029--7598095	31	2.3	27	73	14	62	43	10	8	37	1.71
7600815--7600859	20	2.2	20	92	0	72	33	28	4	33	1.77
7608724--7608772	18	2.6	19	75	12	57	20	8	0	71	1.11
7608948--7608973	8	3.2	8	100	0	52	26	11	0	61	1.30
7609888--7609955	25	2.6	25	86	4	91	38	7	16	38	1.76
7614922--7614976	28	1.9	29	81	3	67	32	10	23	32	1.90
7615363--7615435	29	2.5	29	86	0	101	43	20	12	23	1.85
7616296--7616392	48	2.0	48	93	0	167	45	18	5	30	1.71
7621633--7621660	9	3.1	9	100	0	56	42	0	21	35	1.53
7623255--7623468	111	1.9	111	99	0	419	36	24	9	28	1.88
7641069--7641112	24	1.9	24	90	9	74	36	0	2	61	1.09
7641300--7641341	16	2.6	16	92	0	66	42	7	2	47	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7645562--7645599	19	2.1	19	95	5	69	60	0	0	39	0.97
7647073--7647131	31	1.9	31	86	6	84	33	6	11	47	1.67
7661009--7661043	17	1.9	18	88	11	54	57	5	2	34	1.37
7662213--7662251	18	2.2	17	86	13	53	33	0	20	46	1.51
7662480--7662529	23	2.2	23	92	0	82	22	18	28	32	1.97
7664896--7665073	88	2.0	88	100	0	356	35	14	20	29	1.92
7667778--7667915	60	2.3	58	79	4	159	41	15	14	28	1.87
7669641--7669674	16	2.1	16	88	0	50	50	14	17	17	1.79
7674420--7674453	16	2.1	16	88	0	50	50	14	17	17	1.79
7676330--7676366	16	2.3	16	90	0	56	27	27	13	32	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228