genome.fa.s23.2.7.7.80.10.50.1000.178.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  178  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53242210--53242275	28	2.4	28	97	0	123	48	0	10	40	1.38
53245329--53245403	27	2.8	27	81	0	96	33	16	16	34	1.90
53248481--53248599	43	2.8	43	84	3	134	27	15	25	31	1.96
53253130--53253457	163	2.0	163	93	1	559	33	10	21	34	1.88
53254393--53254511	43	2.8	43	83	6	127	28	15	24	31	1.96
53267683--53267763	29	2.7	30	86	5	110	45	13	8	32	1.74
53268306--53268359	28	1.9	28	84	0	72	24	7	7	61	1.49
53283415--53283448	16	2.1	17	88	5	52	2	11	2	82	0.89
53289247--53289292	22	2.1	22	84	8	58	4	13	2	80	0.95
53295611--53295645	15	2.3	15	100	0	70	62	5	5	25	1.40
53297098--53297766	44	15.0	44	76	8	575	29	21	17	30	1.97
53297123--53297766	225	2.9	226	82	6	672	29	21	18	30	1.97
53307477--53307507	16	1.9	16	93	0	53	58	0	0	41	0.98
53312936--53312968	7	4.7	7	100	0	66	45	12	0	42	1.41
53315029--53315055	7	3.9	7	100	0	54	14	14	14	55	1.70
53315583--53315679	17	5.4	17	64	14	52	32	4	13	49	1.61
53315578--53315722	37	3.9	37	95	1	247	34	4	13	47	1.63
53315578--53315722	73	2.0	74	94	1	256	34	4	13	47	1.63
53315722--53315841	9	13.4	9	87	1	161	31	10	25	33	1.89
53315722--53315841	27	4.5	27	86	2	179	31	10	25	33	1.89
53316232--53316325	49	1.9	49	93	0	161	24	24	7	43	1.80
53317739--53317789	26	2.0	26	100	0	102	19	25	31	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53317698--53317830	67	2.0	67	93	0	230	28	21	26	24	1.99
53317765--53317903	41	3.4	41	85	3	181	28	17	26	27	1.97
53317765--53317995	41	5.6	41	80	10	168	26	16	25	31	1.97
53321549--53321606	3	19.3	3	85	0	71	58	5	3	32	1.37
53326677--53326722	21	2.2	21	81	14	51	36	2	2	58	1.22
53326699--53326828	58	2.3	54	78	12	134	41	1	3	53	1.28
53326714--53326841	58	2.2	58	84	5	159	43	1	3	51	1.26
53327291--53327326	19	1.9	19	94	5	65	33	0	0	66	0.92
53327292--53327332	19	2.2	18	86	4	55	34	0	0	65	0.93
53331146--53331196	25	2.0	25	96	0	93	37	3	1	56	1.29
53331140--53331202	25	2.4	27	82	15	87	34	3	1	60	1.22
53331555--53331599	23	2.0	22	83	12	56	26	2	8	62	1.37
53334632--53334677	19	2.4	19	88	0	74	54	6	0	39	1.26
53337706--53337839	41	3.4	41	69	16	111	32	24	17	25	1.96
53338014--53338079	33	2.0	32	82	8	80	42	19	0	37	1.52
53338718--53338759	21	2.0	21	90	4	68	2	26	0	71	0.98
53338837--53338869	13	2.6	13	90	4	50	57	0	3	39	1.14
53340410--53340473	27	2.4	27	78	0	74	35	17	15	31	1.91
53340738--53340806	33	2.2	31	87	10	95	30	20	24	24	1.99
53346656--53346800	42	3.4	41	82	8	168	29	13	25	31	1.94
53346662--53346846	84	2.2	83	79	11	200	29	14	24	30	1.95
53349119--53349321	41	5.0	41	83	7	243	33	27	18	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53349967--53350001	17	2.1	17	89	5	54	31	14	5	48	1.67
53353456--53353497	21	2.0	21	86	9	59	45	2	21	30	1.65
53359733--53359776	22	2.0	22	82	8	54	22	11	4	61	1.48
53366951--53366975	7	3.6	7	100	0	50	72	0	0	28	0.86
53367472--53367501	7	4.3	7	100	0	60	56	0	0	43	0.99
53368115--53368176	29	2.1	30	84	6	81	40	14	0	45	1.45
53369789--53369820	15	2.1	15	100	0	64	25	15	12	46	1.81
53375423--53375471	25	2.0	25	88	4	73	48	2	10	38	1.48
53377697--53377761	15	4.3	15	70	14	53	30	32	1	35	1.67
53386462--53386505	18	2.5	18	88	3	63	50	2	0	47	1.13
53387194--53387263	16	4.4	16	83	7	79	34	2	34	28	1.72
53387194--53387263	32	2.2	32	82	5	88	34	2	34	28	1.72
53387242--53387332	45	2.0	44	81	10	105	34	4	25	36	1.76
53387470--53387527	16	3.9	15	80	8	57	51	1	0	46	1.11
53387480--53387889	120	3.4	120	94	2	711	50	5	1	43	1.34
53387617--53387651	18	2.0	17	88	5	52	54	0	0	45	0.99
53387930--53387990	28	2.2	28	85	5	81	50	3	0	45	1.17
53387937--53388080	47	3.1	46	64	23	104	48	4	2	45	1.33
53387905--53388112	91	2.3	90	89	4	317	46	4	3	46	1.39
53387930--53388072	44	3.2	43	69	16	119	47	3	2	46	1.31
53387958--53388093	44	3.0	47	69	18	140	48	4	2	44	1.35
53390971--53391035	21	3.3	21	68	24	68	58	6	20	15	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53390958--53391035	38	2.1	38	100	0	156	61	5	17	15	1.51
53391621--53391645	9	2.8	9	100	0	50	24	12	0	64	1.27
53394314--53394354	21	2.0	21	90	0	64	19	29	21	29	1.98
53407504--53407563	30	2.0	30	83	3	75	41	0	38	20	1.52
53407778--53407814	9	4.1	9	92	0	65	29	10	13	45	1.77
53410188--53410270	39	2.1	40	84	10	109	36	3	2	57	1.29
53410749--53410792	22	2.0	22	95	0	79	34	4	36	25	1.76
53414990--53415032	18	2.3	19	84	8	61	9	11	0	79	0.95
53417581--53417624	22	2.0	22	95	0	79	34	4	36	25	1.76
53426382--53426445	23	2.9	21	76	17	58	76	1	6	15	1.06
53426406--53426439	17	1.9	18	88	5	52	79	0	5	14	0.91
53430291--53430325	17	2.1	17	94	0	61	31	0	0	68	0.90
53430780--53430899	62	2.0	62	86	1	170	46	6	7	39	1.58
53431444--53431497	26	2.1	26	86	3	74	66	7	0	25	1.17
53431450--53431499	20	2.5	19	81	15	57	70	6	0	24	1.10
53435071--53435111	21	2.0	21	85	0	55	12	0	29	58	1.34
53440319--53440349	15	2.1	15	93	0	53	9	22	29	38	1.86
53446496--53446630	49	2.8	49	96	0	243	59	17	8	14	1.60
53457421--53457976	276	2.0	276	95	0	995	39	18	14	27	1.90
53458126--53458155	8	3.8	8	95	0	51	60	13	0	26	1.34
53459360--53459390	15	2.1	15	93	0	53	45	0	3	51	1.17
53469418--53469480	33	2.0	32	84	6	83	30	23	22	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53469518--53469644	43	2.9	43	86	1	182	28	22	16	32	1.96
53469531--53469670	43	3.3	41	81	7	154	28	25	17	29	1.97
53473806--53473938	42	3.3	42	69	18	129	39	1	8	51	1.41
53474357--53474516	81	2.0	80	91	1	257	46	19	1	33	1.58
53474552--53474617	7	9.4	7	88	0	78	31	45	0	22	1.53
53474542--53474617	21	3.6	21	80	0	80	31	44	0	23	1.54
53474749--53474931	41	4.4	40	84	4	197	28	27	19	24	1.99
53474749--53474936	81	2.3	81	81	9	220	27	28	19	23	1.99
53475018--53475133	40	2.9	40	90	0	196	20	22	23	33	1.97
53493855--53493891	18	2.1	18	94	0	65	24	8	5	62	1.44
53493850--53493893	23	1.9	23	90	9	72	22	9	6	61	1.50
53493882--53493925	6	8.2	6	85	14	53	34	0	18	47	1.49
53493883--53493929	11	4.5	11	87	12	73	34	0	19	46	1.50
53493884--53493929	20	2.2	21	92	7	85	32	0	19	47	1.50
53493890--53493919	15	2.1	14	93	6	51	33	0	20	46	1.51
53495356--53495396	22	1.9	22	85	5	57	63	14	4	17	1.47
53496119--53496164	24	1.9	24	100	0	92	39	15	10	34	1.82
53502740--53502779	21	1.9	21	100	0	80	20	25	15	40	1.90
53503389--53503474	45	1.9	45	95	0	154	36	10	22	31	1.88
53507342--53507382	18	2.3	18	87	4	57	36	17	12	34	1.87
53512147--53512187	18	2.3	18	87	4	57	36	17	12	34	1.87
53512597--53512677	34	2.4	34	81	8	94	40	14	12	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53513705--53513739	3	11.7	3	100	0	70	65	0	0	34	0.93
53515364--53515422	22	2.7	22	72	15	59	42	0	6	50	1.28
53516006--53516086	40	2.0	40	97	0	153	41	14	18	24	1.88
53518297--53518403	45	2.4	45	83	0	142	41	16	17	24	1.90
53518602--53518687	40	2.1	42	84	4	113	41	19	6	31	1.78
53521146--53521194	24	2.0	24	100	0	98	32	30	8	28	1.86
53523699--53523743	23	1.9	24	86	13	67	55	2	22	20	1.54
53525404--53525469	32	2.1	32	94	0	114	37	12	10	39	1.77
53536924--53536954	12	2.6	12	100	0	62	41	0	0	58	0.98
53538056--53538080	7	3.6	7	100	0	50	28	0	12	60	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228