genome.fa.s23.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  108  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31490546--31490645	43	2.3	43	100	0	200	27	33	15	25	1.95
31504257--31504282	12	2.2	12	100	0	52	50	7	0	42	1.31
31504764--31504941	27	6.6	27	83	3	205	26	15	28	29	1.96
31504765--31504920	82	1.9	81	88	3	233	26	15	28	29	1.96
31504761--31504941	82	2.2	81	83	2	229	27	15	27	29	1.96
31508588--31508622	11	3.1	11	95	4	61	8	8	2	80	1.01
31509620--31509738	39	3.1	39	98	0	229	30	7	32	29	1.85
31513008--31513070	28	2.3	27	83	8	83	33	31	9	25	1.88
31513024--31513080	28	2.0	28	90	6	89	31	28	7	33	1.84
31516432--31516654	101	2.2	102	79	7	249	26	14	27	31	1.95
31516463--31516648	51	3.7	49	77	5	185	24	16	26	32	1.96
31516877--31516908	16	2.0	16	93	0	55	59	0	15	25	1.36
31528224--31528521	91	3.3	91	96	0	542	46	3	3	46	1.38
31528548--31528856	59	5.2	58	65	20	197	43	2	5	48	1.41
31528778--31528812	18	2.0	17	94	5	61	48	0	0	51	1.00
31528902--31528943	15	2.9	15	82	10	52	47	0	0	52	1.00
31528537--31528946	120	3.4	119	94	3	700	43	2	5	48	1.39
31529132--31529164	16	2.1	16	94	0	57	21	33	6	39	1.78
31553327--31553399	29	2.5	29	88	2	110	24	28	12	34	1.92
31553207--31553399	30	6.5	30	71	7	124	23	25	13	37	1.91
31553385--31553460	29	2.6	29	85	2	98	22	30	7	39	1.82
31574458--31574496	20	1.9	21	89	5	62	30	2	15	51	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31578098--31578239	28	5.1	28	81	3	133	27	23	11	37	1.89
31578081--31578239	56	2.9	56	74	6	144	28	25	11	34	1.91
31581356--31581404	22	2.3	21	82	10	55	44	14	0	40	1.45
31584077--31584101	3	8.3	3	100	0	50	36	0	0	64	0.94
31587934--31588031	24	3.9	24	78	10	88	46	11	1	40	1.46
31587958--31588040	28	3.1	27	77	13	82	44	9	2	43	1.50
31587897--31588040	52	2.7	53	80	5	168	42	11	3	42	1.58
31587957--31588041	24	3.4	24	69	12	62	43	9	2	44	1.49
31593398--31593456	22	2.6	22	86	7	75	35	6	1	55	1.36
31598473--31598530	10	5.6	10	76	15	64	81	6	3	8	0.98
31598475--31598523	19	2.5	20	90	6	73	85	4	4	6	0.81
31598475--31598530	20	2.6	22	86	13	82	83	5	3	7	0.88
31600961--31601463	131	3.9	131	88	2	701	32	20	22	24	1.98
31601636--31601805	50	3.4	50	74	3	180	34	21	19	25	1.96
31603276--31603334	22	2.6	22	86	7	75	35	6	1	55	1.36
31616678--31616721	15	3.1	15	77	12	56	25	9	4	61	1.45
31620454--31620483	11	2.7	11	94	0	51	20	3	13	63	1.43
31622693--31622724	8	4.0	8	100	0	64	37	25	0	37	1.56
31623137--31623170	16	2.1	17	94	5	61	47	17	0	35	1.48
31623896--31624415	258	2.0	260	91	1	839	38	16	16	28	1.90
31624503--31624556	5	10.8	5	95	0	99	61	16	0	22	1.35
31624694--31624801	27	4.0	27	83	6	130	53	12	10	23	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31624694--31624801	54	2.0	55	87	5	157	53	12	10	23	1.69
31625827--31625870	5	8.8	5	92	0	52	36	27	0	36	1.57
31628831--31628869	18	2.2	18	86	4	53	64	7	12	15	1.49
31636311--31636356	16	2.8	16	83	3	56	60	2	2	34	1.21
31636822--31636913	19	4.8	19	91	0	157	39	16	7	36	1.77
31636822--31636913	38	2.4	38	98	0	175	39	16	7	36	1.77
31637604--31637715	44	2.5	44	77	11	113	31	17	17	33	1.94
31637556--31637946	217	1.8	216	92	2	660	27	21	20	30	1.98
31638295--31638416	44	2.8	44	86	5	149	27	26	18	27	1.98
31638427--31639080	88	7.4	88	89	0	977	21	24	26	27	1.99
31638625--31638768	44	3.3	43	64	7	110	27	24	22	25	2.00
31640300--31640330	2	15.5	2	100	0	62	0	48	0	51	1.00
31646110--31646201	19	4.8	19	93	0	157	36	16	9	36	1.82
31646087--31646201	38	2.9	38	92	5	176	38	16	8	36	1.80
31650587--31650621	11	3.2	11	87	0	52	28	25	17	28	1.97
31651195--31651246	22	2.4	22	86	0	77	28	13	23	34	1.92
31658521--31658573	25	2.1	25	96	0	97	32	11	13	43	1.79
31661053--31661230	27	6.6	27	82	3	178	30	28	14	26	1.95
31661053--31661230	54	3.3	55	82	3	200	30	28	14	26	1.95
31671406--31671466	24	2.6	24	86	2	88	54	0	0	45	1.00
31673855--31673940	40	2.3	36	80	13	93	32	5	9	52	1.57
31676227--31676646	159	2.7	153	76	12	465	31	12	6	49	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31676354--31677218	285	3.0	285	95	0	1550	31	12	6	50	1.64
31677609--31677697	14	6.6	14	73	16	82	1	30	0	68	0.97
31677623--31677688	24	2.7	26	83	11	93	1	28	0	69	0.97
31677617--31677696	24	3.2	25	80	7	92	1	28	0	70	0.96
31677648--31677708	28	2.2	28	84	0	77	0	32	0	67	0.91
31677650--31677713	14	4.8	13	73	22	53	0	35	0	64	0.94
31677750--31677818	27	2.6	27	85	0	84	18	28	34	17	1.94
31680215--31680312	39	2.5	38	78	6	97	37	15	14	32	1.87
31680618--31680646	15	1.9	15	100	0	58	41	27	0	31	1.56
31685270--31685294	6	4.2	6	100	0	50	16	0	0	84	0.63
31688374--31688417	8	5.2	8	78	10	52	25	2	4	68	1.20
31694372--31695544	89	13.0	88	68	11	441	32	17	21	27	1.96
31694425--31694532	45	2.4	45	82	1	128	35	19	16	28	1.94
31694373--31695540	44	25.8	44	72	6	375	32	17	21	27	1.96
31694573--31695075	139	3.7	139	82	4	549	32	17	22	28	1.96
31694741--31694921	95	1.9	95	81	4	222	33	17	22	27	1.96
31694425--31695122	139	5.2	133	74	7	339	32	17	22	28	1.96
31695028--31695415	139	2.8	138	86	3	528	32	16	23	27	1.96
31694425--31695544	455	2.5	455	89	2	1725	32	17	21	28	1.96
31697251--31697444	73	2.7	71	82	2	219	28	10	2	58	1.42
31697476--31697502	4	6.8	4	100	0	54	25	0	0	74	0.83
31708957--31709150	73	2.7	73	80	2	205	28	8	2	59	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31709309--31709341	6	5.5	6	100	0	66	15	15	0	69	1.19
31709996--31710049	23	2.4	23	81	6	76	42	7	11	38	1.68
31715746--31715834	31	3.0	30	75	8	92	39	14	14	31	1.87
31716712--31716764	22	2.4	22	83	3	61	58	1	11	28	1.43
31717759--31717802	22	2.0	21	91	4	70	63	22	2	11	1.38
31717893--31717951	31	1.9	31	89	0	91	18	16	5	59	1.55
31725070--31725130	3	20.7	3	76	6	54	26	3	3	67	1.22
31730225--31730397	85	2.0	85	100	0	346	41	9	10	37	1.74
31730742--31730766	10	2.5	10	100	0	50	64	20	0	16	1.30
31735774--31735894	59	2.1	59	81	4	138	38	5	15	39	1.72
31737187--31737226	17	2.4	17	88	12	64	67	0	7	25	1.16
31753803--31754368	82	6.9	82	91	0	909	31	25	20	23	1.98
31758716--31759351	23	28.1	22	78	14	574	26	0	24	49	1.52
31758717--31759354	90	7.0	90	77	15	538	26	0	24	49	1.52
31758716--31759351	113	5.6	109	82	10	542	26	0	24	49	1.52
31758727--31759353	45	13.9	43	79	11	454	26	0	24	48	1.52
31758716--31759357	68	9.5	66	79	10	425	26	0	24	48	1.53
31759393--31759443	24	2.1	25	96	3	95	43	11	0	45	1.40
31760230--31760254	7	3.6	7	100	0	50	60	12	0	28	1.32
31761404--31761445	11	3.8	11	90	0	66	50	7	21	21	1.72
31761449--31761488	11	3.6	11	93	6	64	42	0	35	22	1.54
31762464--31762543	18	4.3	18	71	25	60	62	7	3	26	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31762464--31762542	19	4.2	19	70	20	58	63	6	3	26	1.36
31762859--31762894	16	2.2	16	86	13	56	30	0	2	66	1.06
31762862--31762894	17	2.0	17	94	5	59	30	0	3	66	1.06
31765592--31765628	18	2.1	18	94	0	65	18	18	0	62	1.34
31768458--31768517	22	2.7	22	82	7	77	16	20	18	45	1.86
31771217--31771251	14	2.6	14	90	4	54	48	22	11	17	1.79
31771572--31771703	50	2.6	52	78	8	146	37	12	15	34	1.85
31773383--31773425	20	2.2	20	100	0	86	32	9	20	37	1.85
31775754--31775855	49	2.1	49	83	3	125	22	35	17	24	1.95
31777946--31777991	17	2.8	17	86	3	67	28	2	13	56	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228