genome.fa.s23.2.7.7.80.10.50.1000.175.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  175  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52393701--52393741	19	2.1	20	86	4	57	31	9	2	56	1.45
52394211--52394266	25	2.3	25	82	14	73	30	5	0	64	1.16
52394211--52394265	26	2.1	27	86	10	78	29	5	0	65	1.15
52394220--52394273	26	2.1	25	86	3	72	35	3	0	61	1.14
52399038--52399073	18	1.9	19	88	5	56	50	5	8	36	1.56
52404601--52404673	23	3.3	23	66	11	71	45	2	4	47	1.36
52404595--52404700	43	2.5	41	86	9	142	48	4	2	44	1.38
52406481--52406689	91	2.3	91	89	2	303	45	3	3	46	1.39
52406704--52406996	120	2.4	120	94	2	500	42	2	4	50	1.36
52406829--52406880	15	3.6	15	80	12	56	44	0	1	53	1.11
52406945--52406979	18	2.0	17	88	5	52	45	0	0	54	0.99
52406933--52407249	157	2.0	157	96	0	589	47	4	3	44	1.41
52407102--52407136	18	2.0	17	88	5	52	45	0	0	54	0.99
52406934--52407172	76	3.1	75	65	16	207	46	2	3	46	1.34
52407284--52407388	44	2.5	40	76	15	113	31	29	4	34	1.78
52407282--52407391	45	2.6	44	81	8	131	31	29	5	33	1.80
52407370--52407407	16	2.4	16	90	0	58	34	34	0	31	1.58
52407521--52407584	24	2.7	24	90	0	110	53	7	1	37	1.40
52408820--52408877	27	2.1	28	84	9	75	17	0	10	72	1.11
52411882--52411948	34	2.0	34	93	0	116	38	17	14	28	1.90
52412588--52412699	34	3.4	32	80	10	118	43	0	12	43	1.42
52412753--52413017	126	2.1	126	83	2	336	36	14	17	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52416541--52416579	18	2.2	18	95	0	69	41	10	25	23	1.86
52417811--52417880	14	4.6	14	70	19	50	67	1	1	30	1.08
52418981--52419007	6	4.5	6	100	0	54	66	0	33	0	0.92
52419037--52419070	18	1.9	18	88	5	52	23	0	2	73	0.97
52419333--52419362	15	2.0	15	93	0	51	56	6	6	30	1.51
52431354--52431392	20	1.9	21	89	5	62	48	5	0	46	1.24
52431429--52431522	12	8.2	11	68	19	50	48	1	3	46	1.25
52436856--52437002	41	3.6	41	89	1	206	31	19	24	24	1.98
52436979--52437028	26	1.9	26	87	0	73	24	18	28	30	1.97
52437005--52437155	42	3.6	43	74	11	116	24	15	25	34	1.95
52440052--52440196	42	3.5	43	73	11	131	37	24	15	22	1.93
52440178--52440227	26	1.9	26	87	0	73	28	34	18	20	1.95
52440204--52440351	41	3.6	40	81	5	181	24	24	17	33	1.96
52440201--52440351	82	1.8	81	87	5	223	24	24	17	33	1.96
52451486--52451558	26	2.8	26	87	0	101	31	17	9	41	1.82
52453484--52453538	8	6.8	8	76	12	58	36	0	1	61	1.06
52454869--52454973	37	2.7	37	73	5	93	21	20	28	28	1.99
52459997--52460114	57	2.1	58	85	1	157	45	5	19	29	1.71
52468274--52468309	12	3.0	12	87	0	54	75	0	0	25	0.81
52468294--52468351	21	2.6	22	84	13	75	72	5	3	18	1.18
52478211--52478248	16	2.4	16	91	4	60	10	0	36	52	1.36
52478233--52478312	34	2.3	34	80	6	90	28	2	23	45	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52478349--52478471	34	3.7	33	72	14	101	39	0	13	47	1.42
52478549--52478926	125	3.0	125	85	4	485	35	15	19	29	1.93
52481931--52481978	25	1.9	25	83	8	62	58	4	0	37	1.18
52481927--52481982	25	2.3	23	77	16	60	53	3	0	42	1.18
52482398--52482434	18	2.1	18	89	0	56	40	8	24	27	1.83
52483966--52484017	25	2.1	24	82	10	61	67	1	1	28	1.12
52487787--52487830	19	2.4	18	81	7	52	40	15	9	34	1.79
52489775--52489930	68	2.3	68	85	2	197	37	12	21	28	1.90
52505426--52505472	21	2.2	21	84	3	58	34	29	21	14	1.93
52509113--52509243	67	2.0	67	95	0	235	29	33	17	19	1.95
52509371--52509479	57	1.9	57	92	3	184	22	27	20	29	1.98
52510985--52511058	36	2.1	36	100	0	148	13	27	5	54	1.61
52512520--52512562	22	2.0	21	82	8	52	53	4	34	6	1.49
52523897--52523972	10	7.5	11	72	19	51	40	2	1	55	1.22
52523897--52523970	38	2.0	37	84	7	96	40	2	1	55	1.22
52526809--52526885	40	1.9	39	82	10	93	33	23	19	23	1.97
52526899--52526936	14	2.7	14	95	0	67	26	55	5	13	1.59
52530633--52530715	18	4.6	18	79	5	87	48	24	13	14	1.79
52533986--52534045	29	2.1	29	87	6	86	43	13	8	35	1.74
52534070--52534106	19	1.9	19	88	0	56	35	18	8	37	1.81
52551867--52551918	18	3.1	17	83	13	63	26	30	0	42	1.56
52551867--52551918	16	3.1	16	81	18	61	26	30	0	42	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52559041--52559078	19	2.0	19	94	0	67	36	18	10	34	1.85
52560361--52560385	6	4.2	6	100	0	50	16	16	68	0	1.22
52564008--52564047	18	2.2	18	86	8	55	45	0	0	55	0.99
52566804--52566832	3	9.7	3	100	0	58	0	31	0	68	0.89
52567822--52567862	21	2.0	21	90	9	66	24	7	17	51	1.70
52571352--52571385	10	3.6	10	92	7	54	55	5	0	38	1.24
52578349--52578430	42	2.0	42	90	4	130	39	17	12	31	1.86
52579847--52579897	26	2.0	25	81	11	59	60	3	0	35	1.15
52580152--52580189	12	3.2	12	85	7	60	73	23	0	2	0.95
52580141--52580189	23	2.2	22	92	3	80	71	26	0	2	0.97
52581153--52581209	30	1.9	30	88	0	87	35	0	47	17	1.48
52585395--52585431	17	2.2	17	90	0	56	54	0	5	40	1.24
52586838--52587362	50	10.5	50	71	3	385	22	19	23	34	1.96
52586886--52587394	100	5.1	99	84	5	666	22	20	24	33	1.97
52586886--52587395	200	2.5	201	91	1	810	22	20	24	33	1.97
52587380--52588510	131	8.8	131	91	3	1828	24	23	22	29	1.99
52587600--52587783	44	4.2	45	65	15	107	26	22	21	29	1.99
52587896--52588127	116	2.0	116	95	0	419	25	22	22	29	1.99
52588137--52588316	44	4.1	45	65	16	99	25	24	20	30	1.98
52588411--52588550	44	3.2	44	64	27	116	28	24	22	25	1.99
52587380--52588514	509	2.2	517	91	3	1840	24	23	22	29	1.99
52588284--52588728	218	2.0	218	92	0	737	25	23	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52588415--52588597	87	2.1	87	93	2	314	27	22	21	27	1.99
52588502--52589213	131	5.4	131	91	0	1091	25	24	21	28	1.99
52588371--52589165	262	3.0	258	79	8	761	25	24	21	28	1.99
52588153--52588859	349	2.0	349	92	1	1175	25	23	21	29	1.99
52588017--52588990	480	2.0	480	92	0	1626	25	23	21	28	1.99
52589172--52589562	44	8.9	43	83	4	415	22	27	21	29	1.99
52589179--52589564	88	4.4	88	90	1	560	22	27	21	29	1.99
52589170--52589564	132	3.0	131	81	2	477	22	27	21	29	1.99
52590858--52590891	14	2.3	15	90	5	52	14	5	0	79	0.91
52596138--52596174	17	2.2	17	90	0	56	54	0	5	40	1.24
52607295--52607449	77	2.0	77	98	0	301	28	20	20	30	1.97
52608959--52609025	35	1.9	35	96	3	127	35	13	29	20	1.91
52617798--52617914	62	1.9	60	86	5	164	49	5	3	41	1.41
52617874--52617937	29	2.1	31	83	13	80	46	7	3	42	1.48
52617857--52618001	68	2.1	71	80	7	163	51	3	4	41	1.38
52621926--52621954	10	2.9	10	100	0	58	27	20	31	20	1.98
52622466--52622495	12	2.6	11	90	10	51	40	3	10	46	1.54
52627904--52628040	40	3.4	39	78	7	123	35	16	28	19	1.94
52633767--52633806	18	2.2	18	86	13	55	62	5	12	20	1.48
52634688--52634852	40	4.2	40	78	3	154	34	16	27	21	1.95
52634686--52634846	80	2.0	80	82	2	198	34	16	26	22	1.95
52639739--52639777	15	2.6	15	79	0	51	74	2	0	23	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52647647--52647671	2	12.5	2	100	0	50	52	0	48	0	1.00
52648494--52648702	103	2.0	103	88	8	316	26	16	12	44	1.84
52657353--52657408	25	2.2	26	81	6	62	51	3	3	41	1.36
52658659--52658706	21	2.3	21	79	10	55	70	0	6	22	1.09
52658785--52658819	10	3.5	10	92	0	61	65	0	0	34	0.93
52658765--52658838	22	3.5	21	81	7	69	58	4	4	33	1.36
52658765--52658815	12	4.4	12	80	9	52	54	0	5	39	1.24
52658783--52658833	20	2.5	20	87	3	66	62	5	0	31	1.19
52659286--52659368	18	4.3	18	66	24	53	61	2	8	27	1.38
52660938--52661181	44	5.6	44	74	8	203	26	19	22	31	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228