genome.fa.s23.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  130  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38750073--38750282	40	5.3	39	87	7	237	25	20	28	25	1.99
38750020--38750282	120	2.2	120	82	6	311	25	20	27	25	1.99
38750021--38750317	80	3.7	80	79	9	225	26	20	27	24	1.99
38751971--38752165	50	3.9	50	77	4	162	22	28	22	27	1.99
38761751--38761895	53	2.7	54	89	1	229	42	20	17	19	1.90
38761751--38761895	27	5.4	27	86	1	211	42	20	17	19	1.90
38761766--38761928	27	6.1	27	83	7	118	39	20	17	22	1.92
38764741--38764857	40	3.1	39	70	25	113	29	18	26	24	1.98
38764594--38764861	75	3.6	75	82	6	274	32	18	23	24	1.97
38766826--38766855	15	2.0	15	93	0	51	23	46	10	20	1.80
38776747--38776830	26	3.3	25	71	18	66	45	11	10	32	1.75
38782312--38782356	17	2.7	17	89	3	65	28	33	17	20	1.95
38784900--38784945	24	1.9	24	95	0	83	26	8	4	60	1.44
38785737--38785769	15	2.2	15	94	0	57	30	0	9	60	1.27
38794247--38794622	43	8.7	42	83	4	414	28	29	15	26	1.96
38794289--38794622	128	2.6	129	85	4	442	28	29	15	26	1.96
38794661--38794722	30	2.0	32	84	12	85	43	4	3	48	1.40
38794704--38794769	35	1.9	34	84	9	89	54	1	3	40	1.25
38794856--38794939	43	2.0	43	87	0	123	45	11	10	32	1.75
38800580--38800608	15	1.9	15	100	0	58	44	34	0	20	1.52
38800865--38800902	13	3.0	13	84	3	51	47	2	2	47	1.30
38801401--38801557	41	3.9	41	86	5	230	28	27	24	19	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38801405--38801557	81	1.9	81	93	0	261	27	28	25	18	1.98
38801594--38801744	40	3.8	40	82	8	150	21	23	21	34	1.97
38801733--38801758	12	2.2	12	100	0	52	46	30	15	7	1.74
38804149--38804238	27	3.3	27	85	3	117	31	40	18	10	1.84
38807089--38809691	750	3.5	744	78	7	2637	29	23	16	30	1.96
38814730--38814763	15	2.3	15	89	0	50	50	11	0	38	1.39
38817959--38818136	28	6.4	28	89	2	234	32	28	13	25	1.94
38836039--38836078	19	2.1	19	85	0	53	45	0	5	50	1.23
38840886--38841109	40	5.6	40	91	1	317	25	20	27	26	1.99
38840848--38841109	120	2.2	119	83	3	321	24	20	27	27	1.99
38840886--38841144	80	3.3	80	85	3	256	25	20	27	25	1.99
38842802--38842979	27	6.6	26	79	6	160	26	15	28	29	1.96
38842803--38842958	82	1.9	81	84	3	206	26	16	28	29	1.96
38842830--38842979	55	2.8	54	82	4	167	26	16	28	28	1.96
38842799--38842979	82	2.2	81	80	2	202	26	16	27	29	1.96
38844954--38845110	28	5.6	28	75	1	127	24	23	17	34	1.96
38847960--38848017	25	2.3	25	90	0	89	20	25	13	39	1.90
38850706--38850819	41	2.8	41	86	1	156	27	28	20	24	1.99
38852927--38853149	40	5.6	40	86	3	236	24	21	27	26	1.99
38853002--38853184	79	2.3	80	82	1	226	25	20	27	25	1.99
38854564--38854614	2	26.0	2	76	11	52	45	3	3	47	1.40
38854565--38854617	12	4.2	12	81	13	61	45	5	3	45	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38862631--38863116	44	11.0	44	76	3	431	29	26	17	27	1.98
38862638--38863116	132	3.6	132	93	0	778	29	25	17	27	1.98
38880714--38880827	41	2.8	41	84	1	156	27	26	20	26	1.99
38881489--38881539	2	26.0	2	76	11	52	45	3	3	47	1.40
38881490--38881542	12	4.2	12	81	13	61	45	5	3	45	1.45
38886173--38886215	22	2.0	22	81	9	52	34	16	4	44	1.68
38900479--38900515	16	2.3	16	90	0	56	67	21	2	8	1.29
38903524--38903554	14	2.2	14	100	0	62	41	12	19	25	1.87
38907717--38907769	26	2.0	26	96	0	97	28	33	22	15	1.94
38907685--38907948	102	2.6	102	87	4	388	29	31	20	19	1.97
38908284--38908341	30	1.9	30	85	0	80	31	22	8	37	1.84
38911013--38911041	3	9.7	3	100	0	58	31	0	0	68	0.89
38911333--38911460	43	3.0	43	74	19	131	31	29	15	23	1.95
38940435--38940465	15	2.1	15	93	0	53	41	9	6	41	1.63
38943735--38943767	17	1.9	17	93	0	57	15	12	15	57	1.65
38950044--38950243	51	4.0	49	79	5	213	24	17	28	30	1.97
38950016--38950235	101	2.2	100	81	8	257	25	15	28	30	1.96
38957894--38958022	64	2.0	64	81	3	152	21	17	25	34	1.96
38957997--38958044	25	1.9	25	87	8	71	18	20	22	37	1.94
38959959--38960021	27	2.3	27	88	0	99	26	23	28	20	1.99
38962866--38962923	27	2.1	27	80	0	62	22	17	22	37	1.93
38967579--38967958	47	8.1	47	94	0	616	32	9	30	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38969968--38970070	43	2.4	43	100	0	206	22	15	35	26	1.94
38970488--38970600	40	2.9	39	80	9	142	25	23	27	23	2.00
38970409--38970558	80	1.9	81	83	6	198	24	23	28	24	2.00
38970763--38970814	25	2.1	25	82	7	61	32	7	28	30	1.85
38973998--38974131	47	3.1	47	83	15	189	31	7	30	30	1.85
38974054--38974242	37	4.8	38	80	17	185	31	7	30	30	1.85
38974040--38974251	112	1.8	115	89	8	331	32	7	29	30	1.85
38974137--38974393	47	5.6	47	90	1	369	32	8	30	28	1.88
38981097--38981122	3	8.7	3	100	0	52	34	0	34	30	1.58
38987892--38988012	29	4.2	29	90	0	161	39	14	26	19	1.90
38996626--38996874	50	4.8	50	85	5	293	21	28	22	27	1.99
38996969--38997000	13	2.5	13	94	0	55	56	12	0	31	1.37
39005408--39005626	30	7.4	30	75	6	142	36	14	26	22	1.92
39005408--39005641	90	2.6	89	80	2	274	36	14	25	23	1.93
39008794--39008869	36	2.1	36	100	0	152	27	7	22	42	1.81
39008881--39009065	40	4.6	39	82	5	194	25	21	27	25	2.00
39008881--39009037	79	2.0	80	83	6	203	25	21	27	25	1.99
39008918--39009098	79	2.3	78	77	12	181	28	19	25	25	1.99
39016843--39017027	40	4.7	40	79	9	193	24	23	26	25	2.00
39016843--39017027	79	2.3	80	81	8	209	24	23	26	25	2.00
39016896--39017060	79	2.1	79	82	6	192	26	21	26	24	2.00
39020820--39020878	24	2.3	27	85	8	79	35	23	20	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39036488--39036557	25	2.8	25	82	4	70	25	27	18	28	1.98
39038297--39038375	37	2.1	37	90	0	122	25	31	18	24	1.98
39038494--39038988	47	10.4	47	92	1	738	28	29	9	32	1.88
39042449--39042558	53	2.1	53	91	0	175	30	20	30	17	1.96
39045039--39045280	50	4.7	50	76	10	179	26	21	26	24	2.00
39051927--39052149	40	5.6	40	86	3	236	24	21	27	26	1.99
39052002--39052184	79	2.3	80	82	1	226	25	20	27	25	1.99
39059830--39059999	40	4.3	40	85	5	177	25	21	27	25	1.99
39059830--39059997	39	4.3	39	85	7	171	26	21	26	25	1.99
39061375--39071488	513	19.8	514	97	1	18756	35	20	8	35	1.83
39071512--39071539	1	28.0	1	100	0	56	100	0	0	0	0.00
39081799--39081968	40	4.3	40	88	2	227	24	21	27	26	1.99
39081821--39082003	79	2.3	80	82	3	219	26	20	27	25	1.99
39086597--39086690	46	2.0	46	93	4	163	24	18	22	35	1.96
39091285--39091377	21	4.5	21	79	11	104	10	29	20	39	1.86
39091287--39091381	41	2.3	41	83	7	122	10	29	21	38	1.86
39099324--39100069	371	2.0	371	96	0	1357	39	14	10	35	1.81
39128483--39128848	27	13.6	27	82	4	416	44	20	14	21	1.86
39128491--39128865	81	4.7	81	85	4	463	44	19	14	21	1.86
39128491--39128838	54	6.5	54	86	0	473	44	20	14	20	1.87
39131545--39131712	40	4.2	40	82	8	148	27	27	20	24	1.99
39131580--39131765	80	2.3	80	83	9	229	27	27	20	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39131582--39131765	40	4.6	40	83	7	205	27	27	21	23	1.99
39136760--39136804	4	11.2	4	90	0	72	4	0	24	71	1.05
39138783--39138868	20	4.3	20	86	1	111	31	25	1	41	1.63
39141928--39141982	22	2.8	19	81	10	58	63	3	27	5	1.33
39146595--39146623	7	4.1	7	100	0	58	31	55	0	13	1.39
39147683--39147724	17	2.4	18	80	8	50	26	2	2	69	1.13
39152882--39152933	19	2.9	19	80	13	65	67	7	0	25	1.17
39160922--39161153	102	2.3	102	91	2	376	20	20	28	31	1.97
39162728--39162757	9	3.3	9	95	0	51	10	70	0	20	1.16
39168461--39168713	33	7.5	33	68	26	138	20	19	28	32	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228