genome.fa.s23.2.7.7.80.10.50.1000.192.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  192  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56930894--56931165	41	6.6	41	88	3	395	25	26	18	30	1.98
56930894--56931165	123	2.2	123	91	0	436	25	26	18	30	1.98
56940739--56940802	27	2.4	27	86	5	85	29	18	18	32	1.95
56945153--56945195	21	2.0	21	95	0	77	39	13	11	34	1.82
56948043--56948311	41	6.6	41	88	2	364	29	20	27	22	1.99
56948043--56948310	123	2.2	122	89	0	401	29	20	27	22	1.99
56959317--56959378	31	2.0	31	96	0	115	32	8	17	41	1.79
56959678--56959730	3	17.7	3	100	0	106	32	0	0	67	0.91
56963821--56963888	26	2.6	26	85	0	82	32	35	16	16	1.91
56966484--56966532	1	49.0	1	79	0	53	10	0	0	89	0.48
56966486--56966534	9	5.1	9	83	11	62	12	0	0	87	0.54
56966484--56966534	14	3.9	13	82	10	68	11	0	0	88	0.52
56966484--56966521	7	5.6	7	96	3	69	10	0	0	89	0.49
56966530--56966578	20	2.3	21	79	10	55	55	2	2	40	1.23
56967108--56967164	19	2.9	19	78	12	53	40	3	1	54	1.28
56968515--56968557	12	3.5	12	81	15	52	37	11	2	48	1.52
56972343--56972406	29	2.2	29	83	5	85	62	14	1	21	1.40
56973463--56973514	19	2.7	20	85	8	72	59	0	0	40	0.97
56973538--56973613	10	7.7	10	70	18	61	32	2	1	63	1.17
56973535--56973613	19	4.2	18	76	13	79	31	2	1	64	1.15
56973726--56973788	20	3.3	18	76	12	63	38	3	1	57	1.24
56973726--56973789	19	3.3	18	77	16	58	37	3	1	57	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56976430--56976457	7	4.0	7	100	0	56	71	0	0	28	0.86
56980630--56980737	29	3.7	29	75	10	112	37	16	1	43	1.59
56980630--56980703	30	2.5	29	80	10	96	40	13	1	44	1.52
56980630--56980753	59	2.1	59	85	5	162	38	16	1	42	1.58
56980987--56981040	11	4.8	11	77	8	56	66	0	33	0	0.92
56980988--56981046	20	3.0	20	74	16	61	64	0	35	0	0.94
56981904--56981946	22	2.0	20	86	13	59	37	11	9	41	1.74
56981904--56981946	21	2.0	21	86	8	61	37	11	9	41	1.74
56994107--56995475	44	31.1	44	78	5	1311	29	26	15	28	1.96
56994107--56995475	132	10.4	131	85	3	1506	29	26	15	28	1.96
56994107--56995475	265	5.2	263	88	2	1669	29	26	15	28	1.96
57011250--57011317	12	5.6	11	80	15	64	85	7	4	2	0.82
57011253--57011303	10	4.9	10	77	15	50	86	7	1	3	0.77
57011250--57011319	24	3.0	23	81	10	79	84	7	4	4	0.87
57011251--57011318	13	4.8	13	82	12	55	85	7	4	2	0.82
57012176--57013444	74	16.9	75	83	8	1511	28	15	19	36	1.92
57012176--57013444	151	8.4	151	85	8	1528	28	15	19	36	1.92
57013642--57013755	29	3.9	29	82	2	156	34	20	6	39	1.77
57013641--57013764	59	2.1	59	89	3	187	35	20	5	38	1.76
57013641--57013786	59	2.5	60	84	6	174	34	21	5	39	1.76
57013996--57014052	20	2.8	21	78	5	62	64	0	33	1	1.04
57014107--57014136	13	2.3	13	100	0	60	0	40	60	0	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57014477--57014516	15	2.5	17	84	15	59	75	0	25	0	0.81
57014879--57014921	22	2.0	20	86	13	59	37	11	9	41	1.74
57014879--57014921	21	2.0	21	86	8	61	37	11	9	41	1.74
57017064--57017090	7	3.9	7	100	0	54	0	0	14	85	0.61
57017682--57017788	40	2.7	40	80	1	142	20	17	29	31	1.96
57018172--57018262	21	4.3	22	75	10	75	26	1	37	35	1.64
57018476--57018516	21	2.0	20	85	4	55	17	2	41	39	1.62
57018505--57018552	22	2.2	22	96	0	87	20	2	43	33	1.64
57024834--57024922	42	2.1	43	85	2	117	20	14	31	33	1.93
57026847--57026891	21	2.2	20	84	11	56	53	2	0	44	1.13
57031300--57031332	17	1.9	17	100	0	66	30	27	12	30	1.92
57034233--57034257	13	1.9	13	100	0	50	32	0	24	44	1.54
57034251--57034282	13	2.5	13	94	0	55	50	3	28	18	1.62
57044954--57045136	63	2.9	63	80	0	213	46	11	8	33	1.71
57053649--57053712	3	21.0	3	75	3	56	59	3	6	31	1.38
57055276--57055528	44	5.7	45	77	7	196	28	24	18	28	1.98
57055276--57055528	90	2.8	88	77	7	260	28	24	18	28	1.98
57057449--57057477	12	2.3	13	94	5	51	20	0	0	79	0.74
57057470--57057592	45	2.8	45	78	1	131	18	19	17	43	1.88
57060999--57061033	16	2.2	16	94	0	61	48	20	11	20	1.79
57063095--57063181	3	29.0	3	77	0	57	63	8	3	25	1.38
57075105--57075239	3	44.3	3	74	8	103	29	7	1	61	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57078928--57078956	8	3.6	8	100	0	58	89	0	0	10	0.48
57079408--57079456	17	2.8	17	87	3	62	77	0	18	4	0.92
57080377--57080611	89	2.6	89	80	0	272	28	21	23	26	1.99
57080666--57081148	50	9.7	50	65	1	205	31	21	21	26	1.98
57080685--57081213	100	5.3	100	88	1	713	30	20	21	26	1.98
57081033--57081197	50	3.3	49	68	6	125	28	21	23	26	1.99
57081232--57081691	85	5.3	88	78	7	239	30	20	21	27	1.98
57081232--57081634	129	3.1	129	84	3	447	30	19	21	28	1.98
57081232--57081648	214	1.9	214	92	0	692	30	19	21	28	1.98
57081225--57081778	44	12.8	43	69	13	255	30	20	20	27	1.98
57081443--57081738	129	2.3	129	85	5	389	30	19	21	28	1.98
57083606--57083739	3	44.3	3	73	10	94	29	7	2	60	1.36
57083843--57083927	21	4.2	20	70	22	63	20	4	2	72	1.13
57083843--57083909	29	2.3	29	80	14	75	20	2	1	74	1.03
57083858--57083908	8	6.6	8	74	17	54	23	1	1	72	1.05
57083861--57083915	28	1.9	29	85	10	78	20	1	3	74	1.06
57084047--57084073	12	2.2	12	100	0	54	33	0	0	66	0.92
57085741--57085770	6	5.0	6	100	0	60	33	50	16	0	1.46
57087054--57087087	4	8.0	4	90	9	50	23	0	2	73	0.97
57087037--57087096	22	2.7	22	73	19	61	26	0	6	66	1.16
57089439--57089477	18	2.2	18	85	0	51	61	2	23	12	1.43
57090877--57090909	4	8.0	4	96	3	57	24	0	3	72	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57096302--57096603	144	2.1	144	90	2	464	35	19	22	23	1.96
57099762--57099810	24	2.1	23	84	3	62	46	4	2	46	1.33
57102023--57102069	23	2.0	23	100	0	94	53	21	8	17	1.70
57102204--57102276	21	3.5	21	69	3	58	20	26	32	20	1.97
57107458--57107708	42	6.0	42	86	6	339	31	20	23	24	1.98
57108155--57108223	21	3.3	21	74	11	70	4	42	17	36	1.69
57111494--57111638	7	20.0	7	74	12	87	32	46	1	19	1.58
57111494--57111638	15	9.5	14	76	13	112	32	46	1	19	1.58
57111502--57111610	22	4.9	22	80	9	107	30	48	1	19	1.59
57111547--57111618	29	2.5	29	100	0	144	31	51	0	16	1.45
57112341--57112387	24	2.0	22	84	8	58	53	4	2	40	1.32
57112581--57112793	41	5.2	40	72	9	142	33	28	18	20	1.96
57112581--57112793	83	2.6	83	78	7	211	33	28	18	20	1.96
57118106--57118410	156	1.9	159	84	4	404	34	14	15	35	1.88
57119021--57119054	16	2.1	16	100	0	68	26	17	23	32	1.97
57120694--57120805	33	3.4	32	67	16	84	27	50	0	22	1.50
57120667--57120828	66	2.5	66	83	0	207	29	46	3	21	1.66
57120751--57120795	24	1.9	23	82	13	56	31	51	0	17	1.46
57121711--57121831	29	4.2	29	79	4	129	52	33	1	13	1.50
57123714--57123770	26	2.2	26	84	6	71	40	7	3	49	1.47
57127762--57128193	143	3.0	143	97	0	792	40	9	21	28	1.84
57133141--57133374	50	4.8	50	81	11	256	19	28	25	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57133151--57133231	26	3.2	26	61	22	62	19	23	27	29	1.98
57133475--57133504	13	2.3	13	94	0	51	50	13	3	33	1.58
57133717--57133774	30	1.9	30	86	6	82	27	24	6	41	1.80
57146931--57146990	20	3.0	20	97	0	111	45	11	8	35	1.71
57146921--57147015	40	2.3	40	80	10	104	46	12	6	34	1.67
57154352--57154381	6	5.0	6	100	0	60	16	16	16	50	1.79
57158786--57158823	18	2.1	18	85	9	51	18	13	7	60	1.56
57158866--57158922	25	2.4	24	80	8	71	28	10	7	54	1.60
57158818--57158927	12	8.8	12	72	11	69	27	12	8	51	1.68
57160640--57160664	13	1.9	13	100	0	50	64	4	0	32	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228