genome.fa.s23.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  142  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42773982--42774026	18	2.5	19	80	20	60	44	0	13	42	1.43
42778156--42778217	9	6.7	9	81	3	61	24	37	1	37	1.65
42786227--42786283	28	2.1	28	83	9	73	42	17	0	40	1.49
42790232--42790930	346	2.0	348	95	0	1267	45	14	14	26	1.83
42796817--42796876	30	2.0	30	100	0	120	30	3	16	50	1.62
42799466--42800005	28	19.4	28	70	6	184	27	13	28	30	1.95
42799555--42799714	83	1.9	83	83	5	207	26	14	28	30	1.95
42799480--42799846	111	3.3	111	74	5	303	29	14	27	28	1.95
42799529--42800005	139	3.4	138	76	4	447	27	13	28	30	1.94
42799419--42800005	56	10.6	56	70	8	206	27	13	28	30	1.95
42803008--42803052	18	2.5	18	89	7	65	15	2	24	57	1.49
42803124--42803169	23	2.0	23	82	0	56	39	0	6	54	1.26
42806576--42806620	18	2.5	18	96	0	81	13	22	26	37	1.91
42809092--42809144	20	2.7	20	75	0	52	24	7	11	56	1.60
42812013--42812208	50	3.8	50	82	4	194	27	20	29	22	1.99
42814358--42814402	3	15.0	3	100	0	90	66	0	0	33	0.92
42814803--42814868	31	2.1	31	88	0	96	45	7	12	34	1.70
42815503--42815547	20	2.3	20	96	3	83	44	0	0	55	0.99
42815788--42815853	33	2.0	33	100	0	132	51	6	6	36	1.51
42816917--42816945	15	1.9	15	100	0	58	20	20	27	31	1.98
42819084--42819153	35	2.0	35	97	0	131	37	18	14	30	1.90
42822724--42822771	18	2.6	18	83	6	60	50	2	4	43	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42825427--42825494	27	2.5	28	80	7	77	1	17	7	73	1.13
42826140--42826197	21	2.7	22	75	5	64	17	39	22	20	1.92
42834546--42834589	22	2.0	22	82	8	54	40	4	0	54	1.21
42840114--42840142	12	2.3	13	94	5	51	65	6	6	20	1.40
42842041--42842089	25	1.9	26	83	4	64	38	12	10	38	1.77
42845454--42845583	66	2.0	66	82	0	161	55	18	3	23	1.56
42851387--42851478	48	1.9	48	97	0	175	42	14	2	41	1.57
42853450--42853496	19	2.5	19	82	0	67	23	23	34	19	1.97
42857055--42857242	47	4.0	47	97	0	349	32	8	28	30	1.87
42858628--42858890	40	6.6	40	86	3	307	26	27	21	24	1.99
42860385--42860648	47	5.6	47	94	0	447	32	8	30	29	1.87
42865985--42866088	18	5.6	18	67	10	66	67	0	20	11	1.27
42866056--42866094	12	3.2	12	88	0	51	74	0	17	7	1.05
42866060--42866110	18	2.7	20	78	6	61	68	0	23	7	1.15
42872615--42872676	30	2.1	30	93	0	106	30	16	16	37	1.90
42873954--42873993	14	2.9	14	96	0	71	27	0	12	60	1.33
42877159--42877207	25	2.0	25	100	0	98	20	18	16	44	1.86
42884476--42884534	25	2.4	25	88	0	82	28	20	23	27	1.99
42884497--42884571	25	3.0	25	84	3	89	33	16	24	26	1.95
42887125--42887227	27	3.8	27	85	2	136	39	21	15	23	1.91
42895444--42895480	17	2.1	18	85	14	51	43	10	13	32	1.79
42905651--42905680	13	2.3	13	94	0	51	43	6	20	30	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42905660--42905723	27	2.5	25	78	12	67	42	3	18	35	1.66
42909309--42909366	27	2.1	27	84	6	73	31	12	22	34	1.91
42909324--42909544	27	8.3	27	83	6	193	21	15	20	42	1.89
42909324--42909544	55	4.1	55	80	7	215	21	15	20	42	1.89
42909322--42909571	27	9.3	27	85	3	148	21	15	20	42	1.89
42924990--42925032	20	2.2	20	86	0	59	13	37	18	30	1.90
42946631--42946674	20	2.2	20	88	8	63	18	4	0	77	0.94
42956679--42956718	14	3.0	13	82	7	53	60	0	0	40	0.97
42958412--42958561	28	5.4	28	82	7	173	31	23	24	21	1.98
42958412--42958561	55	2.7	56	80	8	198	31	23	24	21	1.98
42958927--42959149	27	8.2	26	82	6	248	18	16	21	43	1.87
42958926--42959149	54	4.1	53	86	4	313	19	16	20	43	1.88
42961485--42961715	40	5.8	39	85	4	293	25	25	21	27	1.99
42961485--42961715	80	2.9	79	88	3	329	25	25	21	27	1.99
42962934--42963008	37	2.0	37	86	0	105	26	30	18	24	1.98
42963127--42963349	47	4.7	47	88	2	306	28	30	8	33	1.87
42967191--42967422	40	5.8	40	84	0	320	26	25	21	25	2.00
42968637--42968715	37	2.1	37	88	0	113	25	30	18	25	1.98
42968834--42969150	47	6.7	47	94	0	535	28	30	8	32	1.86
42969003--42969078	22	3.3	22	66	10	62	27	30	10	31	1.90
42971933--42971974	12	3.5	12	75	12	50	23	42	0	33	1.55
42974012--42974051	18	2.2	18	86	0	53	47	7	27	17	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42976050--42976090	21	1.9	22	85	5	57	68	0	4	26	1.10
42978091--42978268	27	6.6	27	83	3	205	26	15	28	29	1.96
42978092--42978247	82	1.9	81	88	3	233	26	15	28	29	1.96
42978088--42978268	82	2.2	81	83	2	229	27	15	27	29	1.96
42988500--42988559	30	2.0	31	83	3	77	41	0	38	20	1.52
42988772--42988808	9	4.1	9	92	0	65	29	10	13	45	1.77
42993086--42993200	27	4.3	27	78	4	115	42	16	14	26	1.87
42993191--42993256	27	2.5	27	77	2	80	33	15	27	24	1.95
42993377--42993442	27	2.4	27	87	5	89	18	21	24	36	1.95
42993424--42993477	26	2.1	26	82	0	63	18	14	24	42	1.88
42993578--42993641	22	2.9	22	71	0	56	18	23	15	42	1.89
42996681--42996723	12	3.2	13	83	12	52	69	4	2	23	1.18
43017316--43017591	41	6.8	41	87	0	329	37	20	19	22	1.94
43017317--43017591	82	3.4	82	87	1	363	37	20	19	22	1.94
43020332--43020378	21	2.2	22	92	3	78	21	19	38	21	1.94
43024697--43024780	25	3.4	25	83	3	98	26	27	16	29	1.97
43024745--43024792	25	2.0	25	87	4	71	27	25	20	27	1.99
43034667--43034742	27	2.9	27	94	2	136	60	0	10	28	1.30
43034738--43034950	101	2.1	101	87	0	309	30	14	25	29	1.95
43036124--43036222	49	2.0	49	98	0	189	38	22	7	32	1.81
43039822--43039884	31	2.0	32	96	3	119	55	19	6	19	1.63
43044608--43044637	15	2.0	15	100	0	60	73	6	0	20	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43046121--43046167	24	1.9	24	86	4	67	36	0	38	25	1.56
43046769--43047096	27	12.1	27	85	0	404	42	21	16	19	1.89
43047348--43047393	18	2.6	18	92	0	74	21	15	23	39	1.92
43049316--43049362	24	1.9	24	86	4	67	36	0	38	25	1.56
43050470--43050528	24	2.4	26	72	16	63	28	13	8	49	1.71
43057805--43057853	19	2.6	19	93	0	80	24	24	22	28	1.99
43058989--43059033	3	15.0	3	85	0	54	35	4	2	57	1.31
43082111--43082288	27	6.6	27	84	3	205	29	28	15	26	1.96
43082132--43082287	82	1.9	81	88	3	233	29	28	15	26	1.96
43092233--43092323	27	3.3	27	70	17	87	43	3	14	38	1.61
43092217--43092328	56	2.0	56	96	0	206	43	4	14	37	1.65
43098515--43098611	50	1.9	50	81	4	115	29	35	17	17	1.93
43112468--43112507	20	2.0	20	100	0	80	25	20	15	40	1.90
43113517--43113586	28	2.6	28	77	8	74	45	17	18	18	1.85
43117047--43117098	21	2.7	18	75	16	59	30	3	1	63	1.23
43118030--43118088	2	29.5	2	92	0	100	50	45	0	3	1.18
43120442--43120578	73	1.9	73	86	3	195	29	13	24	32	1.94
43122767--43122830	18	3.6	17	74	15	51	6	14	1	78	1.02
43125260--43125313	18	2.8	18	83	11	63	31	22	20	25	1.98
43125539--43125634	34	2.8	35	81	9	110	40	16	13	29	1.87
43125890--43125984	27	3.6	27	79	10	99	60	5	13	21	1.53
43131641--43131727	44	2.0	44	90	0	138	49	3	9	37	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43132890--43132916	8	3.4	8	100	0	54	37	0	0	62	0.95
43133092--43133150	31	1.9	31	86	6	84	44	6	10	38	1.65
43144382--43144416	18	1.9	18	88	0	52	37	14	45	2	1.59
43148887--43148911	13	1.9	13	100	0	50	48	16	0	36	1.46
43149435--43149863	215	2.0	215	95	0	777	30	24	15	29	1.96
43158818--43158860	10	4.1	10	80	11	50	30	0	11	58	1.34
43162722--43162914	80	2.4	80	82	5	221	27	29	19	23	1.98
43162692--43162861	40	4.3	40	91	0	234	27	28	20	23	1.99
43162846--43162923	40	1.9	41	82	10	97	26	28	21	23	1.99
43168525--43168600	23	3.3	23	83	7	109	22	19	26	31	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228