genome.fa.s23.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  149  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44766947--44767007	28	2.2	28	80	8	72	50	3	8	37	1.48
44769308--44769340	17	1.9	18	88	11	52	42	12	0	45	1.41
44783021--44783103	24	3.6	24	79	9	100	37	14	15	32	1.88
44783012--44783103	45	2.0	45	87	0	130	36	14	18	30	1.90
44783540--44783584	23	2.0	23	82	8	56	17	17	17	46	1.84
44796763--44796807	23	1.9	24	86	4	65	46	13	4	35	1.63
44801420--44801493	31	2.4	31	86	4	96	33	32	9	24	1.87
44803498--44803551	20	2.7	20	85	0	72	24	18	18	38	1.93
44803498--44803571	30	2.5	30	86	8	98	21	18	18	40	1.91
44813627--44813659	13	2.5	13	95	0	57	78	6	3	12	1.04
44815806--44815835	7	4.3	7	91	0	51	56	16	10	16	1.66
44816848--44816944	30	3.2	30	75	2	106	28	15	26	28	1.96
44817534--44817588	15	3.8	14	80	7	65	74	1	21	1	1.01
44824090--44824158	26	2.8	23	77	14	66	78	2	5	13	1.05
44825206--44825247	18	2.3	18	87	0	57	71	4	16	7	1.26
44831159--44831208	13	3.6	13	80	15	55	72	2	6	20	1.16
44832208--44832249	18	2.3	18	87	0	57	71	4	16	7	1.26
44835762--44835808	15	3.3	14	82	11	60	4	17	0	78	0.90
44835762--44835812	20	2.5	20	90	6	77	3	19	0	76	0.94
44836770--44836802	10	3.3	10	91	8	50	15	3	9	72	1.21
44836878--44836907	11	2.6	12	94	5	53	6	3	6	83	0.90
44841045--44841083	20	1.9	21	89	5	62	23	28	12	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44841473--44841498	13	2.0	13	100	0	52	46	0	7	46	1.31
44844601--44844694	46	2.0	46	91	4	154	25	18	22	34	1.96
44845011--44845056	14	3.5	13	77	19	51	76	8	2	13	1.11
44849514--44849548	18	1.9	18	88	11	54	22	20	0	57	1.41
44849800--44849898	13	7.5	13	67	23	55	75	6	7	11	1.17
44849800--44849862	14	4.4	14	78	18	67	74	6	4	14	1.18
44849842--44849906	24	2.7	25	83	9	73	75	4	12	7	1.17
44850754--44850795	12	3.2	13	80	16	50	66	0	21	11	1.23
44850777--44850811	18	1.9	18	88	11	54	57	0	20	22	1.41
44855005--44855098	46	2.0	46	91	4	154	23	18	23	35	1.96
44868016--44868092	36	2.2	36	83	6	95	61	3	25	9	1.44
44870094--44870140	20	2.3	20	85	0	67	29	36	12	21	1.91
44875252--44875330	37	2.1	37	90	0	122	25	31	18	24	1.98
44875448--44875605	49	3.2	48	94	2	264	30	30	7	31	1.85
44880329--44880392	21	3.2	20	71	13	60	59	10	7	21	1.56
44890412--44890464	23	2.4	22	76	20	56	9	18	1	69	1.25
44896628--44896673	25	1.9	23	83	16	58	67	10	13	8	1.42
44897065--44897132	21	3.2	21	73	20	70	50	10	4	35	1.57
44897112--44897145	13	2.6	13	100	0	68	47	8	5	38	1.59
44898345--44898405	21	2.9	21	76	16	63	6	21	0	72	1.07
44900354--44900400	20	2.3	20	85	0	67	29	36	12	21	1.91
44902952--44903080	18	7.4	17	66	20	61	53	2	27	17	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44903012--44903117	48	2.2	46	85	12	135	60	0	23	15	1.41
44904783--44904829	20	2.3	20	85	0	67	29	36	12	21	1.91
44913815--44913860	12	3.8	12	91	2	65	76	2	8	13	1.11
44916081--44916122	19	2.3	19	83	4	50	78	2	9	9	1.05
44917903--44917941	20	1.9	21	89	5	62	23	25	12	38	1.90
44918331--44918356	13	2.0	13	100	0	52	46	0	7	46	1.31
44922575--44922621	20	2.3	20	85	0	67	21	12	36	29	1.91
44924291--44924396	48	2.2	48	85	9	137	14	24	1	59	1.45
44925413--44925456	10	4.4	10	80	11	54	6	11	2	79	1.01
44925413--44925456	20	2.3	19	88	4	61	6	11	2	79	1.01
44926613--44926659	20	2.3	20	85	0	67	29	36	12	21	1.91
44928179--44928213	9	3.8	9	88	3	52	85	2	8	2	0.79
44928160--44928222	21	3.0	21	81	11	67	77	3	14	4	1.05
44929236--44929339	48	2.2	47	84	10	131	59	1	24	14	1.45
44929748--44929815	1	68.0	1	100	0	136	0	0	0	100	0.00
44939026--44939072	20	2.3	20	85	0	67	21	12	36	29	1.91
44940878--44940933	26	2.2	26	87	6	78	7	16	1	75	1.11
44942017--44942077	28	2.2	26	81	16	70	4	16	4	73	1.18
44943615--44943661	20	2.3	20	85	0	67	21	12	36	29	1.91
44959782--44960004	40	5.6	40	83	7	274	24	22	26	26	2.00
44964773--44964995	40	5.6	40	86	3	227	25	21	27	26	1.99
44964848--44965030	79	2.3	80	82	1	226	25	20	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44972641--44972863	40	5.6	40	86	3	236	24	21	27	26	1.99
44972716--44972898	79	2.3	80	82	1	226	25	20	27	25	1.99
44977489--44977547	17	3.6	17	81	4	59	38	35	18	6	1.78
44990764--44991575	44	18.8	44	70	14	433	29	20	22	27	1.98
44990850--44991574	89	8.4	87	68	15	389	29	20	22	27	1.98
44990765--44991551	217	3.6	217	92	1	1256	29	20	21	28	1.98
44990892--44991217	173	1.9	173	79	11	364	30	21	20	27	1.98
44992035--44992093	17	3.6	17	81	4	59	38	35	18	6	1.78
45004374--45004410	16	2.5	15	87	12	58	48	13	8	29	1.71
45004381--45004414	16	2.1	16	100	0	68	50	11	5	32	1.63
45010173--45010384	47	4.5	47	86	3	266	29	31	8	30	1.87
45010266--45010345	25	3.3	25	65	16	69	32	31	5	31	1.79
45010174--45010385	94	2.3	94	88	1	309	29	31	8	30	1.87
45023507--45023724	29	7.5	29	78	5	154	35	11	28	24	1.90
45027373--45027457	30	2.8	30	82	7	109	22	18	21	37	1.94
45038006--45038441	50	8.7	50	86	4	522	22	29	19	27	1.98
45038007--45038441	99	4.3	100	85	3	527	22	29	20	27	1.98
45042088--45042839	40	18.6	40	92	2	1227	27	19	27	24	1.99
45049178--45049842	40	16.6	40	94	0	1143	27	20	27	24	1.99
45057280--45057403	50	2.5	49	77	5	122	28	19	29	23	1.98
45064786--45064964	28	6.5	28	95	1	290	26	12	27	32	1.92
45064786--45064964	55	3.2	55	92	2	288	26	12	27	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45064786--45064964	83	2.2	83	93	0	304	26	12	27	32	1.92
45073038--45073218	28	6.5	28	94	1	294	26	12	27	33	1.93
45076480--45076611	50	2.6	50	80	4	167	29	22	28	19	1.98
45077532--45077571	21	1.9	21	84	0	53	47	7	12	32	1.69
45080926--45081135	40	5.3	40	90	1	262	25	20	27	26	1.99
45080987--45081170	79	2.3	80	82	3	221	26	20	27	25	1.99
45080876--45081170	120	2.5	120	80	5	287	26	20	27	25	1.99
45088497--45088668	79	2.2	79	84	3	220	25	21	27	25	1.99
45088444--45088666	40	5.6	39	81	8	209	25	21	27	25	1.99
45088524--45088701	79	2.2	80	80	3	191	25	21	28	24	1.99
45090775--45090887	28	4.0	28	87	6	167	30	23	22	23	1.99
45090734--45090890	56	2.7	59	81	12	180	29	22	22	24	1.99
45090775--45090887	56	2.0	56	93	3	192	30	23	22	23	1.99
45090985--45091067	26	3.2	26	79	5	96	32	25	24	18	1.97
45091303--45091575	81	3.4	81	90	3	410	19	17	19	42	1.89
45091302--45091575	27	10.2	27	85	1	354	19	17	20	42	1.89
45091742--45091783	20	2.2	20	86	4	59	23	42	21	11	1.86
45097308--45097337	16	1.9	16	93	6	53	50	20	0	30	1.49
45102927--45102996	36	1.9	36	86	11	99	40	4	0	55	1.19
45108670--45108769	48	2.1	48	96	0	182	33	25	14	28	1.94
45110054--45110397	51	6.8	50	81	5	356	29	26	15	28	1.96
45110055--45110397	102	3.4	102	88	2	460	29	26	16	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45110058--45110404	153	2.3	149	80	5	394	29	26	15	28	1.96
45115314--45115507	98	2.0	100	93	4	340	38	11	22	27	1.89
45131334--45131396	33	1.9	33	84	12	85	12	26	6	53	1.62
45131413--45131532	12	10.0	12	69	19	63	8	19	3	69	1.29
45131413--45131449	14	2.7	14	84	15	51	8	16	0	75	1.02
45131456--45131514	18	3.3	18	80	0	73	5	16	6	71	1.26
45131411--45131518	6	17.7	6	68	5	65	6	19	3	70	1.25
45132623--45132667	19	2.4	18	96	3	81	24	8	0	66	1.20
45135126--45135222	30	3.2	30	77	2	115	29	15	25	28	1.96
45137482--45137531	6	8.2	6	81	16	50	2	20	2	76	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228