genome.fa.s23.2.7.7.80.10.50.1000.220.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  220  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64723948--64724073	57	2.2	57	87	2	173	47	6	17	28	1.72
64725689--64725764	38	2.0	38	97	0	143	51	6	13	28	1.65
64734955--64735017	19	3.3	19	73	8	65	30	22	23	23	1.99
64735755--64735860	53	2.0	53	100	0	212	37	13	5	43	1.67
64738367--64738592	62	3.7	60	81	5	238	19	28	26	25	1.98
64744748--64744923	62	2.8	62	86	1	219	23	26	23	26	2.00
64747996--64748070	18	4.5	17	75	24	79	36	4	18	41	1.70
64748016--64748076	31	2.0	31	100	0	122	39	3	14	42	1.62
64748029--64748076	14	3.2	14	74	25	53	39	2	14	43	1.57
64750560--64750791	102	2.3	104	93	2	389	20	21	27	30	1.98
64777123--64777160	18	2.1	19	90	5	60	52	5	21	21	1.66
64796550--64796596	16	2.8	17	74	9	51	36	12	2	48	1.53
64798377--64798402	13	2.0	13	100	0	52	53	7	38	0	1.30
64806712--64806744	16	2.0	17	88	5	50	48	0	0	51	1.00
64816937--64817015	37	2.1	37	97	0	149	21	11	22	44	1.84
64818036--64818093	25	2.4	23	80	5	62	67	5	5	22	1.31
64837744--64837785	21	2.0	21	100	0	84	33	23	0	42	1.55
64845169--64845194	4	6.5	4	100	0	52	50	23	0	26	1.50
64846926--64847018	47	2.0	47	83	8	118	53	5	7	33	1.52
64848700--64848973	44	6.4	43	73	13	217	27	21	23	28	1.99
64848735--64848993	129	2.0	129	89	1	394	25	22	22	29	1.99
64848984--64850581	100	16.2	98	84	6	1463	25	20	21	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64849164--64849881	50	14.7	49	69	11	190	23	21	23	32	1.98
64849093--64850581	488	3.0	487	89	2	2099	25	20	21	31	1.98
64849359--64850581	50	24.9	50	74	8	992	26	20	21	31	1.98
64850605--64850732	44	2.9	44	75	5	123	24	22	21	31	1.98
64851972--64852080	7	16.0	7	90	5	179	14	16	0	68	1.21
64851972--64852080	34	3.2	34	93	2	184	14	16	0	68	1.21
64851981--64852080	41	2.4	41	100	0	200	14	16	0	70	1.18
64852989--64853013	6	4.2	6	100	0	50	16	16	0	68	1.22
64861363--64861405	16	2.8	16	82	10	54	67	0	2	30	1.03
64866660--64866708	23	2.1	23	100	0	98	34	14	12	38	1.83
64871157--64871205	23	2.1	23	100	0	98	34	14	12	38	1.83
64873422--64873458	18	2.0	19	89	5	58	13	8	5	72	1.24
64886344--64887470	132	8.5	132	81	4	980	28	17	24	29	1.97
64886470--64887591	220	5.1	220	99	0	2165	29	17	24	29	1.97
64888423--64888459	18	2.0	19	89	5	58	13	8	5	72	1.24
64892393--64892439	4	11.8	4	90	0	76	46	27	2	23	1.63
64893912--64894031	51	2.4	51	80	8	145	36	18	4	40	1.70
64894607--64894632	6	4.3	6	100	0	52	15	0	0	84	0.62
64902330--64902390	30	2.0	30	100	0	122	34	9	29	26	1.88
64904011--64904048	19	2.0	19	94	0	67	34	0	0	65	0.93
64904013--64904055	19	2.3	19	87	0	59	34	0	0	65	0.93
64906344--64906582	117	2.0	117	90	0	379	33	17	25	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64908456--64908495	20	2.0	21	95	5	73	62	5	7	25	1.42
64909002--64909125	9	13.1	9	71	21	85	32	2	1	63	1.17
64909002--64909172	20	8.9	19	71	17	92	31	2	1	64	1.16
64909003--64909114	38	3.0	38	79	10	124	29	2	1	66	1.16
64909002--64909125	47	2.6	46	75	14	119	32	2	1	63	1.17
64909110--64909157	21	2.3	20	82	3	60	35	4	0	60	1.16
64910947--64911066	51	2.4	51	80	8	145	36	18	4	40	1.70
64919367--64919427	30	2.0	30	100	0	122	34	9	29	26	1.88
64921056--64921093	19	2.0	19	94	0	67	34	0	0	65	0.93
64921058--64921100	19	2.3	19	87	0	59	34	0	0	65	0.93
64923400--64923638	117	2.0	117	90	0	379	33	17	25	23	1.96
64925511--64925551	21	2.0	21	100	0	82	63	4	7	24	1.40
64926055--64926172	9	12.8	10	67	21	53	33	2	1	62	1.18
64926055--64926173	18	6.5	18	73	15	93	33	2	1	62	1.19
64926060--64926165	35	3.0	34	79	15	117	31	2	1	64	1.19
64926055--64926165	8	12.6	8	72	22	57	32	2	1	63	1.19
64926185--64926232	15	3.1	15	80	13	53	29	0	0	70	0.87
64927984--64928103	51	2.4	51	80	8	145	36	18	4	40	1.70
64936189--64936243	28	1.9	29	89	10	87	34	10	29	25	1.90
64937801--64937836	18	2.0	18	94	0	63	36	0	0	63	0.94
64937803--64937842	18	2.2	18	86	0	53	37	0	0	62	0.95
64940121--64940358	116	2.0	117	89	0	370	33	17	26	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64942231--64942270	21	2.0	21	95	5	73	62	5	7	25	1.42
64942775--64942894	9	13.1	9	72	22	90	32	2	1	63	1.18
64942775--64942894	19	6.5	18	72	20	81	32	2	1	63	1.18
64942776--64942886	36	3.1	35	82	12	136	30	2	1	64	1.17
64942775--64942955	64	2.8	62	75	15	165	30	2	1	65	1.14
64942879--64942926	21	2.3	20	82	3	60	35	4	0	60	1.16
64945578--64945663	42	2.0	43	86	6	122	46	13	13	25	1.81
64945704--64945742	10	3.5	11	86	10	53	28	0	0	71	0.86
64945698--64945738	18	2.3	19	79	12	50	29	0	0	70	0.87
64952041--64952074	16	2.0	18	88	11	54	35	0	2	61	1.11
64964255--64964350	43	2.2	45	86	3	133	56	4	4	35	1.38
64967607--64967653	20	2.3	20	86	13	62	34	2	4	59	1.29
64970745--64970771	13	2.1	13	100	0	54	37	14	7	40	1.74
64984083--64984126	19	2.3	20	84	7	56	27	20	11	40	1.86
64986712--64986759	25	1.9	25	86	0	69	81	4	4	10	0.97
64988474--64988700	44	5.2	44	64	8	156	30	24	20	24	1.98
64988468--64989085	88	7.0	88	87	6	822	29	22	23	25	1.99
64988468--64989085	184	3.5	177	89	6	826	29	22	23	25	1.99
64988768--64989085	87	3.7	87	81	5	376	28	21	24	25	1.99
64990982--64991089	30	3.5	30	71	20	78	38	13	1	45	1.55
65001965--65002338	182	2.1	182	98	0	730	33	15	19	31	1.93
65004420--65004461	4	10.5	4	94	0	66	45	23	4	26	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65008713--65008757	4	11.2	4	95	0	81	46	26	0	26	1.53
65021340--65021406	3	22.3	3	80	6	55	31	5	4	58	1.42
65026911--65026960	16	3.1	17	82	8	59	16	22	2	60	1.46
65029955--65029980	11	2.4	11	100	0	52	73	0	0	26	0.84
65031337--65031457	49	2.5	49	82	10	149	28	23	28	19	1.98
65033008--65033061	3	18.3	3	88	3	83	64	0	31	3	1.11
65040479--65040592	40	3.0	40	75	17	141	49	7	5	37	1.55
65040528--65040584	28	2.1	27	86	3	78	49	7	3	40	1.47
65040638--65040694	16	3.6	16	90	0	87	45	3	3	47	1.37
65040668--65040729	22	2.7	23	90	5	90	48	1	1	48	1.21
65042784--65043150	46	7.6	49	86	8	431	34	14	22	28	1.93
65042784--65043150	98	3.7	97	84	9	492	34	14	22	28	1.93
65042798--65043150	196	1.8	196	92	0	598	35	14	22	28	1.93
65043114--65043222	37	3.0	36	94	5	193	38	16	20	24	1.92
65049331--65049387	28	2.0	28	100	0	114	38	17	7	36	1.77
65049533--65049615	30	2.8	29	85	10	96	37	3	9	49	1.53
65049533--65049615	31	2.8	29	83	10	87	37	3	9	49	1.53
65050721--65050763	18	2.4	17	81	11	50	23	9	0	67	1.19
65051094--65051152	24	2.5	25	86	5	70	37	38	1	22	1.64
65051113--65051158	24	2.0	23	86	4	65	41	41	0	17	1.49
65052977--65053034	21	2.8	21	70	19	57	22	20	36	20	1.95
65059906--65060141	125	1.9	124	88	2	357	30	13	21	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65064807--65064840	15	2.3	15	90	5	52	67	5	0	26	1.13
65065038--65065079	22	1.9	22	85	9	59	33	2	33	30	1.71
65065051--65065109	30	2.0	30	89	0	91	32	1	33	32	1.68
65065080--65065150	22	3.2	22	88	7	108	35	1	28	35	1.66
65065323--65065416	42	2.3	40	80	14	104	15	31	29	22	1.95
65067519--65067576	26	2.2	26	81	3	71	63	13	12	10	1.51
65069200--65069233	17	2.0	17	88	0	50	47	2	0	50	1.16
65090529--65090579	25	2.0	25	92	0	84	21	15	15	47	1.83
65092468--65092580	47	2.4	45	80	11	120	26	25	3	44	1.70
65095039--65095079	20	2.1	19	86	9	55	29	2	7	60	1.36

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228