genome.fa.s23.2.7.7.80.10.50.1000.198.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  198  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58210089--58210129	16	2.5	16	88	4	55	46	2	0	51	1.14
58211464--58211534	28	2.5	28	100	0	142	29	8	0	61	1.25
58224449--58224491	17	2.6	17	81	3	52	69	2	18	9	1.26
58225607--58231333	43	135.0	43	77	9	4415	25	0	26	47	1.57
58226098--58226153	29	1.9	29	85	7	78	26	0	23	50	1.50
58226295--58226354	13	5.4	13	64	35	50	25	0	25	50	1.50
58226496--58226565	36	2.0	34	88	5	104	20	0	35	44	1.52
58227172--58227216	13	3.7	13	75	25	53	26	0	22	51	1.49
58229554--58229639	27	3.1	28	73	19	81	22	0	26	51	1.48
58229850--58229952	22	4.2	27	67	25	86	29	0	22	48	1.51
58229947--58229981	14	2.5	15	86	13	56	20	0	40	40	1.52
58230689--58230729	14	2.9	14	96	3	73	31	0	21	46	1.52
58230727--58230760	7	5.0	7	92	3	52	17	0	41	41	1.50
58230693--58230775	14	5.9	14	78	7	60	24	0	30	45	1.53
58225607--58231333	21	270.1	21	77	10	4784	25	0	26	47	1.57
58232588--58232627	7	5.7	7	93	0	71	57	12	0	30	1.36
58232796--58232833	20	1.9	20	84	10	51	57	7	0	34	1.28
58233785--58233834	11	4.5	11	87	2	64	44	4	34	18	1.68
58237098--58237148	11	4.7	10	76	23	50	15	1	7	74	1.13
58237098--58237148	20	2.3	23	83	9	63	15	1	7	74	1.13
58240297--58240384	43	2.0	43	97	0	167	26	15	19	38	1.92
58240905--58240952	17	2.7	18	78	18	55	60	6	4	29	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58245352--58245380	6	4.8	6	100	0	58	17	0	17	65	1.27
58249853--58249880	12	2.3	12	100	0	56	42	7	0	50	1.30
58253571--58253612	21	2.0	22	90	4	68	69	7	21	2	1.25
58260755--58260803	22	2.3	22	96	3	91	38	28	0	32	1.57
58264451--58264500	26	2.0	26	84	7	68	44	2	2	52	1.24
58264565--58264630	27	2.4	27	92	5	107	25	30	28	15	1.96
58266322--58266366	18	2.5	18	88	0	72	15	48	6	28	1.70
58267016--58267072	16	3.6	16	92	4	89	36	5	35	22	1.77
58267011--58267080	16	4.4	15	85	7	68	34	4	32	28	1.77
58267011--58267080	32	2.2	32	82	5	88	34	4	32	28	1.77
58267409--58267463	15	3.8	15	81	11	62	52	1	0	45	1.11
58267297--58267662	119	3.1	119	92	4	578	51	5	1	42	1.33
58267553--58267586	17	2.0	17	100	0	68	58	0	0	41	0.98
58267972--58268007	12	3.1	12	92	4	56	25	2	2	69	1.15
58267961--58268023	23	2.7	24	73	11	76	28	4	4	61	1.36
58271221--58271255	3	11.7	3	100	0	70	68	31	0	0	0.90
58271325--58271362	9	3.7	10	86	13	51	63	10	0	26	1.27
58271325--58271363	19	2.0	21	90	10	64	64	10	0	25	1.25
58271590--58271656	27	2.6	27	92	4	111	47	1	8	41	1.44
58271961--58272004	16	2.8	16	89	0	70	36	0	29	34	1.58
58273355--58273414	30	2.0	31	86	3	86	40	0	40	20	1.52
58273704--58273734	9	3.4	9	90	0	53	38	22	12	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58275748--58275841	48	2.0	48	89	4	145	30	15	23	29	1.96
58281852--58281920	36	1.9	36	87	0	102	36	14	30	18	1.91
58283179--58283223	22	2.0	22	87	8	65	46	15	4	33	1.66
58287779--58287823	22	2.0	22	91	0	72	48	15	2	33	1.57
58294251--58294318	33	2.1	33	100	0	136	36	35	5	22	1.78
58294332--58294356	13	1.9	13	100	0	50	40	16	16	28	1.89
58307925--58307963	19	2.0	20	90	5	62	58	15	12	12	1.62
58309768--58309831	31	2.1	31	82	5	76	56	6	6	31	1.49
58311777--58311816	21	1.9	21	84	0	53	55	2	7	35	1.42
58312790--58313024	125	1.9	125	89	5	368	31	14	22	31	1.94
58313558--58313620	22	2.8	23	77	15	69	44	0	20	34	1.52
58320200--58320286	41	2.1	41	89	0	129	62	12	0	25	1.31
58322662--58322729	32	2.1	32	91	5	111	52	17	0	29	1.45
58330046--58330220	88	2.0	86	80	8	194	36	9	10	44	1.72
58334685--58334717	4	8.2	4	100	0	66	24	0	24	51	1.48
58337260--58337400	27	5.2	27	86	3	194	24	27	9	37	1.87
58337246--58337401	81	1.9	82	86	1	224	25	28	10	36	1.88
58339000--58339192	57	3.6	54	84	5	225	22	18	13	45	1.85
58345071--58345255	101	1.8	101	87	3	273	30	26	17	25	1.98
58345073--58345259	51	3.7	49	81	5	212	29	26	17	25	1.97
58346207--58346240	7	4.9	7	100	0	68	85	0	0	14	0.60
58349262--58349306	21	2.0	23	87	8	67	37	0	2	60	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58350067--58350133	28	2.4	28	92	2	109	67	0	0	32	0.91
58350070--58350112	20	2.1	21	86	4	61	67	0	0	32	0.91
58350065--58350141	28	2.8	26	79	12	84	67	0	0	32	0.91
58350188--58350242	9	5.9	9	74	21	51	61	1	3	32	1.24
58350116--58350239	19	6.6	20	72	21	90	58	2	8	30	1.40
58352023--58352065	21	2.1	20	91	4	68	55	0	0	44	0.99
58352114--58352178	20	3.3	18	80	18	60	66	3	6	24	1.29
58353621--58353698	29	2.8	28	88	5	115	34	0	42	23	1.54
58354028--58354111	19	4.3	18	76	11	69	34	0	2	63	1.08
58354699--58354751	27	2.0	26	96	3	97	33	18	9	37	1.83
58359121--58359214	30	3.1	30	90	1	143	25	24	6	43	1.78
58359131--58359208	15	5.2	15	67	11	61	25	21	7	44	1.79
58361409--58361496	39	2.3	40	92	4	137	46	13	3	36	1.60
58361420--58361497	39	2.0	39	100	0	156	48	10	2	38	1.51
58362014--58362094	21	3.9	21	76	0	72	44	16	20	18	1.87
58362004--58362153	42	3.6	41	79	1	138	46	16	20	17	1.84
58362035--58362153	21	5.7	21	74	7	98	44	14	22	18	1.86
58364259--58364321	30	2.1	30	93	0	108	25	3	14	57	1.52
58364725--58364881	78	2.0	78	92	0	260	42	13	19	24	1.88
58366287--58366352	33	2.0	33	100	0	132	42	21	15	21	1.89
58368179--58368363	101	1.8	102	91	3	311	24	16	26	32	1.96
58368176--58368365	51	3.8	49	82	4	220	23	16	27	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58368285--58368365	26	3.2	25	67	28	62	23	12	27	37	1.90
58368371--58368581	43	5.0	43	81	8	254	23	18	24	34	1.96
58368371--58368581	85	2.5	84	93	2	352	23	18	24	34	1.96
58370776--58370800	2	12.5	2	100	0	50	0	0	48	52	1.00
58371669--58371859	61	3.2	60	72	11	210	43	1	4	50	1.30
58371605--58371894	120	2.4	120	97	0	544	43	1	3	51	1.27
58377103--58377199	40	2.4	40	87	5	133	40	24	18	16	1.91
58377210--58377523	113	2.8	111	82	8	366	25	23	23	28	2.00
58378168--58378198	15	2.0	16	93	6	55	16	0	45	38	1.47
58378489--58378519	15	2.1	15	93	0	53	9	0	32	58	1.31
58378446--58378541	49	2.0	49	83	4	122	9	1	36	53	1.40
58379569--58379612	19	2.3	19	84	0	61	31	43	2	22	1.66
58381737--58381796	18	3.3	18	65	21	52	50	11	5	33	1.61
58381703--58381835	37	3.6	37	90	2	205	49	9	6	33	1.62
58381783--58382288	57	9.0	57	79	7	523	46	9	6	38	1.61
58381816--58382420	20	32.2	20	63	19	151	46	9	5	38	1.60
58381954--58382119	37	4.5	37	94	0	278	47	10	6	35	1.64
58381847--58382578	225	3.4	225	79	15	954	47	9	5	37	1.60
58381703--58382358	282	2.3	280	94	0	1116	46	9	5	37	1.60
58382229--58382358	37	3.5	37	95	0	215	48	10	4	36	1.57
58382355--58382530	37	4.7	37	92	4	282	48	10	5	35	1.61
58382179--58382489	130	2.4	130	96	1	561	48	9	4	36	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58382355--58382530	75	2.4	74	92	2	291	48	10	5	35	1.61
58382512--58382550	20	2.0	20	94	0	69	43	5	5	46	1.48
58382304--58382587	112	2.5	110	69	15	247	48	10	4	36	1.58
58382563--58382827	34	7.7	34	78	4	273	44	20	2	32	1.64
58382562--58382857	9	34.1	9	71	12	208	43	21	2	32	1.64
58382565--58382818	104	2.4	104	94	1	438	44	21	2	32	1.65
58388311--58388360	21	2.4	21	86	0	64	36	18	42	4	1.69
58388674--58388833	42	3.8	42	88	0	212	36	23	18	21	1.95
58391437--58391496	18	3.4	18	64	13	52	43	6	10	40	1.64
58391696--58391837	43	3.3	43	91	2	223	19	21	31	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228