genome.fa.s23.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  159  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47815675--47815773	42	2.4	42	82	3	110	38	17	26	18	1.92
47818217--47818265	20	2.5	20	83	6	64	42	12	14	30	1.82
47821011--47821582	114	5.0	114	88	1	826	26	21	26	25	2.00
47821819--47821909	38	2.5	37	87	3	121	16	3	40	39	1.65
47821841--47821914	7	9.9	7	73	13	58	16	1	45	36	1.56
47821840--47821907	16	3.9	16	77	19	64	16	1	45	36	1.56
47821858--47821914	30	2.0	28	82	6	69	17	1	45	35	1.59
47822904--47822965	32	2.0	32	93	3	108	51	8	0	40	1.31
47822946--47822979	14	2.4	14	95	0	59	41	11	0	47	1.40
47823065--47823095	15	2.1	15	100	0	62	61	0	0	38	0.96
47823081--47823142	12	5.5	11	75	17	56	53	0	3	43	1.17
47826685--47826728	22	1.9	22	86	9	61	56	6	0	36	1.26
47826741--47826893	43	3.6	43	83	5	195	23	17	27	31	1.97
47829756--47829806	26	2.0	26	88	0	75	39	11	25	23	1.89
47829975--47830030	21	2.7	21	71	17	53	21	5	5	67	1.31
47829975--47830039	11	6.2	10	72	13	51	23	4	4	67	1.28
47830053--47830121	20	3.6	19	80	7	77	40	0	7	52	1.29
47830059--47830121	18	3.3	18	84	8	81	41	0	6	52	1.27
47830193--47830226	17	1.9	18	88	5	52	32	11	11	44	1.77
47833791--47833918	57	2.2	56	78	8	134	24	24	26	25	2.00
47837219--47837254	3	12.0	3	100	0	72	33	0	0	66	0.92
47841779--47841824	22	2.2	21	88	7	67	65	2	0	32	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47848490--47848541	25	2.1	25	92	7	88	25	26	9	38	1.86
47850822--47850849	14	2.0	14	100	0	56	57	0	0	42	0.99
47850883--47850957	32	2.4	31	82	6	87	45	18	9	26	1.80
47853763--47853946	40	4.6	41	80	9	184	26	28	21	24	1.99
47853763--47853948	80	2.3	82	80	9	204	26	27	21	24	1.99
47855114--47855291	84	2.1	85	98	1	349	26	27	8	37	1.85
47864973--47865583	314	1.9	314	97	0	1159	20	22	13	43	1.87
47876604--47876633	15	2.0	15	93	0	51	63	13	13	10	1.52
47888233--47888268	16	2.2	17	90	5	56	58	11	13	16	1.63
47895778--47895871	49	1.9	48	97	2	179	34	17	13	35	1.89
47906686--47906746	32	1.9	32	100	0	122	24	6	21	47	1.74
47907195--47907261	20	3.3	20	91	0	107	46	4	25	23	1.71
47912911--47912984	20	3.7	20	88	0	112	51	4	24	20	1.64
47916625--47916671	13	3.5	14	77	8	53	51	12	14	21	1.76
47929012--47929163	42	3.6	42	82	0	187	28	20	18	32	1.96
47929005--47929179	84	2.1	84	86	1	244	29	20	18	31	1.96
47929332--47929393	30	2.1	30	100	0	124	50	12	3	33	1.57
47937832--47937869	3	12.7	3	100	0	76	65	0	0	34	0.93
47940520--47940554	14	2.4	14	90	4	52	11	0	34	54	1.37
47940683--47940728	22	2.1	22	83	0	56	69	4	4	21	1.24
47960898--47960973	36	2.1	35	85	7	100	30	9	25	35	1.87
47960908--47960977	35	2.0	36	91	2	115	28	11	22	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47975837--47976617	394	2.0	393	90	3	1230	32	21	15	30	1.94
47978378--47978417	19	2.1	19	100	0	80	37	12	5	45	1.64
47978563--47978646	43	2.0	43	92	2	143	48	2	25	23	1.63
47982624--47982667	20	2.2	20	83	4	52	72	4	11	11	1.25
47985228--47985262	10	3.2	11	88	12	54	17	37	0	45	1.48
47985245--47985300	22	2.5	22	91	2	94	26	32	1	39	1.67
47986467--47986491	7	3.6	7	100	0	50	28	0	12	60	1.32
47987663--47988223	23	23.8	22	70	23	208	45	24	0	30	1.53
47987693--47987778	29	3.2	29	77	19	112	46	24	0	29	1.53
47987673--47988146	52	9.9	50	70	24	293	45	24	0	30	1.53
47987896--47987956	21	2.8	22	85	9	72	49	21	0	29	1.50
47987940--47988063	29	4.8	27	76	21	108	45	24	0	29	1.53
47987811--47988171	73	5.0	73	85	3	475	45	24	0	29	1.53
47987986--47988099	18	6.3	18	63	27	53	46	25	0	28	1.53
47988050--47988086	18	2.1	18	95	5	67	43	29	0	27	1.55
47988079--47988139	28	2.2	28	88	5	88	45	18	0	36	1.49
47988229--47988439	116	1.8	116	93	0	368	38	8	9	43	1.67
47991477--47991704	126	1.8	126	96	0	420	31	22	15	29	1.95
47996410--47996515	42	2.5	42	79	0	122	20	35	19	23	1.96
48000736--48000801	28	2.4	27	80	7	78	36	22	18	22	1.95
48003342--48003436	51	1.9	48	83	10	120	14	22	8	54	1.66
48004314--48004379	27	2.5	26	75	4	69	53	21	3	22	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48004355--48004471	35	3.3	35	84	7	164	46	18	5	29	1.71
48004349--48004459	36	3.1	36	87	5	163	46	18	4	29	1.69
48007729--48007821	4	22.5	4	77	14	91	51	21	2	24	1.59
48007710--48007918	63	3.4	62	79	7	212	53	19	3	24	1.60
48007741--48007900	25	6.4	26	69	18	72	51	20	3	25	1.61
48007853--48007900	13	3.8	13	83	10	55	52	20	4	22	1.64
48009227--48009293	26	2.6	26	85	2	82	49	2	8	38	1.50
48010832--48011362	44	12.0	44	83	4	624	31	24	13	31	1.93
48012657--48012702	14	3.3	13	82	11	56	8	21	0	69	1.15
48012671--48012711	21	2.0	21	85	0	55	9	21	0	68	1.18
48013612--48013655	18	2.4	18	88	0	61	65	6	13	13	1.44
48017396--48017463	26	2.7	25	81	4	73	48	2	8	39	1.49
48022677--48022755	34	2.3	34	84	0	95	31	8	17	41	1.80
48023809--48023873	29	2.2	29	77	0	76	41	10	23	24	1.86
48024870--48024902	15	2.1	16	94	5	59	63	3	0	33	1.10
48028790--48028893	35	2.9	35	80	4	102	30	24	22	23	1.99
48030937--48030963	6	4.5	6	100	0	54	0	14	0	85	0.61
48037005--48037038	17	2.1	15	89	10	50	64	0	0	35	0.94
48037025--48037064	19	2.2	19	86	4	55	67	7	5	20	1.34
48046579--48046677	34	2.9	34	77	8	110	35	23	21	20	1.96
48046583--48046901	143	2.2	143	81	3	399	34	22	20	22	1.97
48053542--48053636	47	2.0	47	100	0	190	23	8	20	48	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48054970--48055047	33	2.4	33	84	0	111	35	24	14	25	1.93
48056430--48056479	6	8.5	6	78	12	59	20	0	0	80	0.72
48056429--48056479	17	2.9	17	85	2	75	21	0	0	78	0.75
48056429--48056472	5	8.0	5	85	14	52	22	0	0	77	0.77
48057406--48057447	18	2.3	19	88	12	61	80	0	19	0	0.70
48059504--48059673	40	4.3	39	87	5	207	25	21	27	25	1.99
48059531--48059708	79	2.2	80	80	3	191	25	21	28	24	1.99
48062167--48062206	14	3.0	13	86	13	55	0	10	0	90	0.47
48062170--48062203	18	1.9	18	94	5	61	0	11	0	88	0.52
48062259--48062328	22	3.2	22	97	0	131	50	14	11	24	1.75
48074331--48074407	30	2.6	29	82	12	86	66	1	6	25	1.24
48074331--48074406	28	2.6	29	81	10	84	67	1	6	25	1.23
48074877--48074921	21	2.2	21	84	7	58	40	2	0	57	1.11
48075115--48075447	43	7.9	42	81	7	352	27	29	18	25	1.98
48075115--48075447	170	2.0	169	83	4	420	27	29	18	25	1.98
48079170--48079256	27	3.2	27	73	20	99	48	6	0	44	1.29
48079152--48079272	55	2.2	55	100	0	242	44	8	0	47	1.33
48079152--48079272	27	4.4	28	70	22	96	44	8	0	47	1.33
48079268--48079520	130	2.0	126	82	12	308	42	25	1	30	1.66
48079506--48079536	7	4.4	7	91	0	53	35	48	0	16	1.46
48079496--48079536	14	2.9	14	85	0	55	34	46	0	19	1.50
48079425--48079663	126	1.9	119	82	9	293	42	28	1	27	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48080181--48080390	41	5.1	41	91	0	321	31	25	18	24	1.98
48082927--48082960	6	5.3	6	86	13	50	64	2	2	29	1.22
48089771--48089800	15	1.9	16	93	6	53	33	0	40	26	1.57
48091695--48091835	63	2.3	63	83	3	178	25	29	23	21	1.99
48092332--48092378	14	3.6	14	77	16	64	74	0	17	8	1.05
48092754--48092874	4	30.8	4	96	3	228	50	0	24	24	1.50
48093452--48093509	28	2.1	28	100	0	116	31	3	22	43	1.70
48093460--48093517	28	2.2	26	88	11	84	31	5	18	44	1.72
48099345--48099386	17	2.5	17	84	0	57	73	2	9	14	1.18
48105720--48105805	44	2.0	44	93	4	147	26	22	27	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228