genome.fa.s23.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  157  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47130907--47130932	13	2.0	13	100	0	52	46	23	7	23	1.78
47133150--47133175	3	8.7	3	100	0	52	34	0	0	65	0.93
47150253--47150309	21	2.7	21	94	0	105	42	10	10	36	1.74
47154997--47155042	24	1.9	24	86	0	65	45	17	26	10	1.81
47158791--47159117	44	7.4	44	63	13	125	32	18	22	26	1.97
47158750--47159405	132	5.0	132	93	0	1060	31	19	23	25	1.98
47159463--47159603	40	3.4	40	72	11	149	26	21	21	29	1.99
47159420--47159647	84	2.7	83	89	5	318	28	20	22	29	1.98
47159499--47160097	44	13.9	41	70	15	245	27	20	23	28	1.99
47159547--47160095	217	2.5	217	91	0	893	27	20	23	28	1.99
47159463--47160095	84	7.4	85	72	12	354	27	20	23	28	1.99
47160190--47160276	44	2.0	43	80	10	97	24	22	26	26	2.00
47160442--47160498	21	2.7	21	91	0	96	43	8	10	36	1.70
47160903--47160931	15	1.9	15	100	0	58	27	0	6	65	1.18
47164404--47164516	49	2.3	49	82	1	127	24	19	23	31	1.98
47172579--47172603	13	1.9	13	100	0	50	60	16	8	16	1.58
47175746--47175781	18	2.0	18	94	0	63	77	0	8	13	0.98
47180974--47181011	20	1.9	20	89	10	60	23	0	7	68	1.16
47187004--47187043	21	1.9	21	84	0	53	45	30	0	25	1.54
47187109--47187162	14	3.9	14	80	9	65	46	25	0	27	1.53
47187479--47187647	40	4.3	40	83	5	202	27	23	20	28	1.98
47187479--47187651	76	2.2	79	83	4	217	27	23	20	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47187704--47187824	39	3.1	40	84	3	156	25	20	22	31	1.98
47188770--47188806	19	1.9	19	94	0	65	32	27	13	27	1.94
47198507--47199044	108	5.0	108	90	4	807	33	19	17	30	1.95
47198529--47199038	217	2.4	217	94	0	896	33	20	17	29	1.95
47199205--47199249	18	2.4	18	85	7	54	71	2	2	24	1.09
47199459--47199514	3	17.7	3	78	10	58	57	0	5	37	1.22
47201142--47202163	170	6.0	170	92	1	1609	28	21	18	31	1.97
47201150--47202163	44	23.7	44	67	17	220	28	21	18	31	1.97
47201142--47202163	510	2.0	512	94	1	1782	28	21	18	31	1.97
47213605--47214359	108	7.0	108	89	4	1110	32	18	17	31	1.94
47213627--47214353	217	3.4	217	95	0	1267	33	18	17	30	1.95
47214520--47214564	18	2.4	18	85	7	54	71	2	2	24	1.09
47214776--47214824	3	15.3	3	79	12	53	59	0	4	36	1.17
47216296--47216357	31	2.0	31	100	0	124	32	9	16	41	1.80
47216658--47216686	3	9.7	3	100	0	58	31	0	0	68	0.89
47218698--47218740	11	3.8	11	81	3	50	39	0	0	60	0.97
47221120--47221371	124	2.0	125	89	2	391	32	21	15	30	1.94
47224183--47224692	256	2.0	255	94	0	894	30	9	17	41	1.82
47225894--47225957	13	5.0	13	80	1	67	35	18	3	42	1.66
47225896--47225980	26	3.3	26	76	0	80	32	18	2	45	1.62
47225895--47225980	13	6.7	12	76	9	55	32	18	2	46	1.62
47226143--47226204	25	2.5	25	72	0	61	30	24	14	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47227537--47227568	13	2.4	14	89	10	57	59	0	0	40	0.97
47234691--47234738	25	1.9	25	86	0	69	35	16	14	33	1.89
47240002--47240044	21	2.0	22	86	4	61	46	4	9	39	1.57
47256649--47256878	43	5.3	43	82	3	257	30	24	19	25	1.98
47260085--47260131	19	2.5	19	92	0	85	38	8	10	42	1.70
47261502--47261560	29	2.0	29	96	0	109	28	15	25	30	1.96
47262230--47262394	89	1.9	89	87	2	242	45	29	0	24	1.54
47262853--47262898	20	2.4	19	85	7	58	65	4	4	26	1.30
47262926--47263168	41	5.9	41	87	4	312	32	22	20	23	1.98
47264144--47264190	20	2.4	20	75	3	51	55	0	2	42	1.12
47266159--47266198	5	8.4	5	83	10	57	60	0	2	37	1.11
47266161--47266203	15	3.1	14	83	12	54	60	0	2	37	1.10
47266338--47266377	14	2.9	14	84	0	53	32	7	17	42	1.77
47266361--47266400	20	2.0	20	85	0	53	25	10	15	50	1.74
47266346--47266412	34	1.9	35	87	3	100	29	8	14	46	1.76
47266499--47266537	20	2.0	20	94	0	69	48	2	0	48	1.15
47269952--47270000	25	1.9	26	83	4	64	65	4	26	4	1.29
47270061--47270098	18	2.1	18	95	0	67	44	0	55	0	0.99
47270061--47270112	24	2.2	24	82	0	59	44	0	53	1	1.11
47278804--47279033	43	5.3	43	81	5	250	31	19	21	27	1.97
47279466--47279505	21	1.9	21	94	0	71	2	47	17	32	1.61
47284955--47285289	9	39.8	9	69	17	211	30	2	20	46	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47284977--47285240	16	15.9	16	73	13	141	31	1	20	46	1.58
47284961--47285289	25	13.0	25	73	13	134	30	2	20	46	1.62
47285055--47285119	34	1.9	34	90	0	103	32	1	18	47	1.58
47285063--47285241	34	5.8	33	69	23	122	30	1	21	46	1.59
47284960--47285280	118	2.7	118	90	5	485	30	1	20	47	1.61
47285336--47285653	121	2.6	121	95	1	568	45	5	8	40	1.58
47285669--47285695	2	13.5	2	100	0	54	51	0	0	48	1.00
47285699--47285787	18	4.8	18	79	14	101	41	0	12	46	1.41
47285683--47285882	39	5.1	38	78	12	176	42	1	11	45	1.48
47285701--47285805	31	3.5	31	71	21	100	42	0	13	43	1.43
47285828--47285892	13	4.9	13	75	17	71	43	1	9	46	1.45
47285683--47285887	40	5.3	39	73	15	165	42	1	10	45	1.48
47286742--47286771	13	2.3	13	94	0	51	50	10	0	40	1.36
47289509--47289684	15	11.9	15	73	13	98	33	43	0	22	1.57
47289509--47289633	22	5.6	22	77	5	90	32	44	0	22	1.59
47289556--47289683	7	17.7	7	78	6	112	33	46	0	20	1.51
47289556--47289689	29	4.9	28	71	15	109	33	45	0	20	1.52
47289562--47289704	51	2.8	51	92	1	207	34	44	0	20	1.52
47289547--47289684	22	6.3	22	81	8	124	34	44	0	21	1.52
47290874--47290941	15	4.9	14	71	16	52	41	35	0	23	1.55
47290877--47290914	15	2.5	15	86	0	58	36	42	0	21	1.53
47291432--47291586	41	3.8	41	82	5	188	34	23	25	16	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47291432--47291601	82	2.1	82	92	0	277	34	23	24	17	1.96
47293041--47293219	42	4.3	42	90	0	279	31	20	21	27	1.98
47298701--47298735	13	2.7	13	100	0	70	48	0	5	45	1.26
47300030--47300255	42	5.4	42	85	4	280	30	19	22	27	1.98
47300907--47300933	12	2.2	12	100	0	54	40	22	18	18	1.91
47301349--47301446	40	2.5	41	73	9	96	20	27	20	31	1.97
47303990--47304754	382	2.0	382	98	0	1476	27	18	9	44	1.81
47309346--47309385	20	2.0	20	85	9	55	47	12	0	40	1.41
47309804--47309841	18	2.1	18	90	9	60	34	13	7	44	1.72
47323146--47323197	21	2.4	21	80	3	59	17	25	40	17	1.90
47330412--47330521	55	2.0	55	94	0	193	40	11	18	30	1.86
47336840--47336966	55	2.3	55	91	0	200	26	20	29	23	1.99
47340054--47340147	20	4.9	19	72	16	86	38	14	11	35	1.83
47340054--47340166	57	2.0	55	94	3	199	38	15	11	34	1.84
47340054--47340146	37	2.4	37	72	15	91	38	15	11	34	1.84
47340054--47340174	55	2.2	57	91	5	185	38	16	11	33	1.85
47341241--47341328	44	2.0	44	88	4	133	29	32	7	29	1.86
47349061--47349104	23	1.9	23	90	9	72	43	22	4	29	1.73
47358712--47359092	44	8.7	44	89	1	514	29	19	26	24	1.98
47370099--47370129	16	1.9	16	93	0	53	35	6	9	48	1.62
47374547--47374573	14	1.9	14	100	0	54	70	0	14	14	1.17
47388319--47388369	15	3.3	15	79	12	59	62	5	29	1	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47393508--47393532	13	1.9	13	100	0	50	32	20	16	32	1.94
47394082--47394232	27	5.6	26	81	7	151	27	15	27	29	1.96
47394082--47394232	55	2.8	53	79	4	167	27	15	27	29	1.96
47409563--47409723	39	4.4	38	84	15	218	22	27	21	27	1.99
47417207--47417266	10	6.2	10	71	21	56	68	13	1	16	1.29
47417202--47417266	22	2.8	22	76	17	60	69	12	1	16	1.27
47417202--47417281	12	6.4	12	73	15	65	67	13	1	17	1.30
47417217--47417248	16	2.0	16	100	0	64	68	18	0	12	1.20
47418904--47419396	132	3.7	132	90	1	731	26	24	19	29	1.99
47418904--47419396	263	1.9	263	89	1	765	26	24	19	29	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228