genome.fa.s23.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  104  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30151491--30152025	132	4.2	132	87	6	808	30	25	16	27	1.96
30151659--30152026	119	3.0	119	84	9	511	31	26	15	26	1.96
30151779--30152029	44	5.7	45	76	4	233	30	27	14	27	1.95
30151523--30152026	251	2.0	251	93	0	855	30	26	15	26	1.96
30154125--30154156	12	2.7	12	100	0	64	68	0	9	21	1.17
30155837--30156000	77	2.1	77	96	0	301	38	12	18	29	1.88
30156719--30156747	14	2.1	14	93	6	51	65	0	6	27	1.18
30157507--30157638	59	2.3	59	90	1	203	38	15	9	36	1.80
30157507--30157639	19	6.8	19	89	4	185	38	15	9	36	1.81
30168823--30168888	26	2.5	26	85	0	87	28	28	16	25	1.97
30179131--30179169	19	2.1	19	85	0	51	28	0	20	51	1.48
30191006--30191107	20	5.1	20	77	4	107	33	21	33	11	1.90
30191029--30191187	40	4.0	40	86	1	185	33	20	28	16	1.95
30197866--30197900	7	4.9	7	89	6	52	8	14	2	74	1.17
30199125--30199271	73	2.0	73	93	0	249	31	11	21	34	1.89
30199956--30200025	34	2.1	34	100	0	140	14	14	15	55	1.69
30201239--30201285	25	1.9	24	83	12	60	36	2	10	51	1.49
30201448--30201581	25	5.4	25	73	3	99	33	19	19	27	1.96
30202720--30202746	14	1.9	14	100	0	54	29	14	22	33	1.94
30204648--30204717	25	2.8	26	81	14	92	34	15	17	32	1.91
30220498--30220657	86	1.9	86	88	5	243	31	11	14	43	1.80
30236459--30236492	2	17.0	2	100	0	68	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30237131--30237291	87	1.9	87	90	0	259	30	13	14	40	1.85
30238909--30239069	87	1.9	87	91	0	268	41	15	12	30	1.84
30245148--30245200	19	2.7	20	74	14	56	41	0	3	54	1.18
30246850--30246885	18	1.9	18	88	5	54	36	11	16	36	1.84
30250490--30250752	40	6.6	40	86	3	300	26	28	20	24	1.99
30250490--30250752	80	3.3	79	87	3	334	26	28	20	24	1.99
30258438--30258698	40	6.6	40	85	4	298	27	28	20	24	1.99
30258438--30258645	78	2.6	79	87	3	303	26	28	20	23	1.99
30258441--30258698	78	3.3	79	85	5	256	26	28	20	24	1.99
30261037--30261128	27	3.4	27	87	0	130	28	20	7	43	1.79
30261118--30261254	26	5.2	26	70	6	87	37	21	10	29	1.88
30261290--30261341	27	1.9	27	88	7	79	40	13	11	34	1.81
30261386--30261452	25	2.6	25	79	9	64	38	19	20	20	1.93
30262264--30262323	25	2.4	25	88	8	86	28	26	25	20	1.99
30262480--30262568	42	2.1	42	89	2	135	30	13	21	34	1.92
30278033--30278191	87	1.8	87	87	0	237	28	13	16	40	1.87
30294655--30294700	24	2.0	23	91	4	74	6	2	32	58	1.36
30297211--30297377	41	4.1	41	83	0	199	32	13	30	23	1.93
30297206--30297391	82	2.3	82	86	0	255	33	13	29	23	1.93
30297211--30297412	41	4.9	41	80	2	192	33	13	28	23	1.93
30297936--30297965	13	2.3	13	94	0	51	66	10	10	13	1.44
30304499--30304638	41	3.4	41	77	5	158	33	11	32	22	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30307779--30307821	5	8.6	5	89	0	68	39	0	18	41	1.51
30307779--30307829	10	5.1	10	90	0	57	39	0	17	43	1.49
30308260--30308334	26	3.0	24	78	9	69	21	24	20	34	1.96
30315011--30315055	22	2.1	21	83	4	54	33	0	17	48	1.48
30315386--30315445	25	2.4	25	82	0	66	20	26	23	30	1.98
30316628--30316659	12	2.7	12	90	0	55	28	18	37	15	1.92
30320415--30320592	27	6.6	27	85	3	214	30	28	14	26	1.95
30320436--30320591	82	1.9	81	89	3	242	30	28	14	26	1.95
30329260--30329437	27	6.6	27	85	3	214	26	14	28	30	1.95
30329261--30329416	82	1.9	81	89	3	242	26	14	28	30	1.95
30329257--30329437	82	2.2	81	84	2	238	27	14	27	30	1.95
30331423--30331559	72	1.9	72	95	0	247	32	11	15	40	1.83
30335402--30335486	41	2.1	41	100	0	170	54	9	4	31	1.53
30342765--30342848	44	1.9	44	90	0	132	27	21	20	30	1.98
30342776--30343153	44	8.7	44	72	17	179	26	22	21	29	1.99
30342767--30343164	216	1.8	217	92	0	681	27	22	20	29	1.98
30343179--30343300	45	2.8	44	82	8	149	27	25	18	28	1.98
30343183--30343300	44	2.6	45	81	9	143	28	25	17	27	1.98
30343024--30343311	147	2.0	147	92	0	486	27	23	20	29	1.99
30355679--30355725	23	2.1	22	84	11	60	55	0	10	34	1.35
30356797--30356822	12	2.2	12	100	0	52	23	7	19	50	1.73
30357254--30357312	30	1.9	31	86	3	84	28	20	3	47	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30365174--30365206	16	2.1	16	100	0	66	24	24	0	51	1.48
30365934--30365988	27	2.0	27	100	0	110	32	29	7	30	1.84
30366185--30366224	18	2.2	19	90	4	64	55	0	0	45	0.99
30370984--30371012	8	3.6	8	100	0	58	75	0	0	24	0.80
30379368--30379410	18	2.3	18	88	4	59	55	2	0	41	1.12
30393759--30393786	6	4.7	6	100	0	56	85	0	14	0	0.59
30394984--30395038	24	2.3	24	83	0	65	36	3	7	52	1.47
30398014--30398406	47	8.3	47	91	1	579	32	9	29	28	1.88
30398525--30398603	37	2.1	37	90	0	122	24	18	31	25	1.98
30401320--30401631	155	2.0	155	98	0	606	39	16	10	34	1.82
30401755--30401779	12	2.1	12	100	0	50	28	8	0	64	1.22
30411117--30411171	28	2.0	28	88	0	83	27	25	23	23	2.00
30411281--30411357	26	3.0	26	82	0	100	44	23	16	15	1.86
30411523--30411839	27	11.7	27	75	11	156	18	17	19	43	1.88
30411553--30411839	81	3.5	80	82	4	326	17	17	19	44	1.86
30411537--30411839	54	5.6	54	82	3	342	17	18	19	44	1.87
30414370--30414424	28	2.0	28	88	0	83	27	23	25	23	2.00
30414530--30414580	26	2.0	26	92	0	84	43	21	19	15	1.88
30414764--30415093	27	12.3	27	83	4	380	16	16	20	45	1.85
30422267--30422346	27	3.0	27	81	5	99	22	17	21	38	1.93
30422269--30422435	27	6.2	27	73	6	97	21	16	21	40	1.91
30422278--30422425	54	2.7	53	83	4	154	21	16	18	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30437323--30437438	61	1.9	61	83	3	153	33	9	16	40	1.81
30437566--30437662	41	2.4	41	92	3	160	29	18	19	31	1.96
30443271--30443309	21	1.9	21	89	5	62	33	12	23	30	1.92
30448955--30449115	87	1.9	87	91	0	268	40	16	11	31	1.84
30451174--30451227	24	2.2	24	90	0	81	11	11	11	66	1.45
30464926--30464950	12	2.1	12	100	0	50	64	0	0	36	0.94
30466720--30466848	63	2.0	64	96	1	242	22	13	21	41	1.88
30469798--30469827	2	15.0	2	100	0	60	0	50	0	50	1.00
30469883--30469968	43	2.0	43	100	0	172	18	13	20	46	1.83
30474472--30474503	5	6.4	5	100	0	64	0	18	0	81	0.70
30476666--30476833	30	5.7	30	75	7	146	38	11	26	22	1.89
30476673--30476833	60	2.7	60	75	10	168	39	11	27	21	1.88
30476657--30476863	90	2.3	88	85	3	261	37	13	26	23	1.92
30476821--30476893	30	2.4	30	86	0	92	38	12	21	27	1.89
30479401--30479451	25	2.1	23	82	13	59	50	3	3	41	1.39
30483582--30483671	27	3.4	26	75	6	76	37	3	18	40	1.68
30483870--30483921	24	2.2	23	83	10	61	50	0	1	48	1.12
30485939--30485980	21	2.0	22	90	4	68	28	2	0	69	1.01
30489185--30489368	38	4.7	37	71	17	140	44	1	3	51	1.27
30489232--30489385	18	8.9	18	66	18	76	42	0	2	54	1.19
30489167--30489647	120	4.0	120	95	0	750	42	1	4	51	1.31
30489475--30489526	15	3.6	15	80	12	56	44	0	1	53	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30489466--30489549	43	1.9	43	83	7	107	41	1	2	54	1.21
30489771--30489880	45	2.6	43	79	11	120	31	28	5	34	1.80
30489859--30489928	16	4.4	16	94	0	104	34	34	0	31	1.58
30489946--30489996	24	2.1	24	85	0	66	39	3	7	49	1.51
30494363--30494414	24	2.2	24	85	0	68	38	3	7	50	1.50
30498563--30498593	3	10.0	3	93	6	53	0	35	0	64	0.94
30498562--30498593	13	2.5	13	95	5	57	0	37	0	62	0.95
30498728--30498789	19	3.2	19	76	13	72	19	16	14	50	1.79
30499179--30499230	17	3.1	17	91	0	86	50	1	9	38	1.46
30499536--30499930	90	4.4	89	85	8	519	32	9	9	48	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228