Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: D10 Parameters: 2 7 7 80 10 50 1000 Length: 67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  103  of  228  ( 27298 repeats found )
Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29867329--29867421
39
2.4
39
96
0
168
31
19
21
27
1.97
29869440--29869569
41
3.2
40
90
5
206
29
20
26
23
1.99
29881220--29881260
18
2.3
18
87
4
57
36
2
0
60
1.10
29884063--29884112
18
2.7
19
81
12
59
22
20
44
14
1.86
29884099--29884202
49
2.1
49
85
0
136
26
19
32
21
1.97
29885592--29885643
27
1.9
27
88
0
77
34
19
25
21
1.96
29885828--29885971
52
2.8
52
87
4
209
27
17
15
39
1.90
29885825--29885971
26
5.7
25
81
12
163
26
17
17
38
1.91
29890889--29890932
12
3.8
12
81
3
54
40
0
0
59
0.98
29892675--29892714
18
2.2
18
90
0
62
22
32
7
37
1.82
29893143--29893274
71
1.9
71
85
1
185
35
3
12
48
1.57
29894243--29894469
125
1.8
125
92
1
384
33
22
15
28
1.95
29899487--29900131
321
2.0
322
93
2
1118
29
14
20
35
1.93
29901347--29901371
6
4.2
6
100
0
50
32
0
0
68
0.90
29909846--29909871
13
2.0
13
100
0
52
46
7
23
23
1.78
29911108--29911142
17
2.1
16
89
5
52
60
0
0
40
0.97
29911112--29911155
14
3.1
14
90
6
63
56
2
0
40
1.11
29911676--29911728
23
2.2
26
83
10
67
30
1
20
47
1.61
29912192--29912221
14
2.1
15
93
6
53
43
0
6
50
1.28
29921146--29921184
18
2.2
18
85
0
51
51
12
5
30
1.62
29925370--29925400
6
5.2
6
100
0
62
83
0
0
16
0.64
29925863--29925888
3
8.7
3
100
0
52
69
0
0
30
0.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29930043--29930128
26
3.2
26
70
18
68
44
3
1
51
1.26
29936609--29936666
22
2.7
21
76
10
53
41
18
5
34
1.73
29937039--29937766
88
8.3
87
86
3
866
22
24
26
26
2.00
29937092--29937311
44
5.0
44
65
4
147
20
25
27
26
1.99
29937025--29937766
264
2.8
263
84
4
956
22
24
25
27
2.00
29937427--29937763
44
7.6
45
66
8
165
24
24
24
26
2.00
29944676--29944726
19
2.7
19
100
0
102
37
15
11
35
1.84
29948985--29949119
73
1.9
73
86
4
195
15
17
9
57
1.63
29952954--29953020
20
3.4
20
85
8
84
35
0
8
55
1.32
29960506--29960560
17
3.2
17
72
25
53
52
1
43
1
1.22
29961409--29961488
30
2.6
30
82
9
92
41
3
2
52
1.33
29966516--29966664
54
2.8
54
78
4
149
28
27
24
19
1.98
29988625--29988656
16
2.0
17
88
11
50
28
15
12
43
1.83
29988642--29988687
18
2.6
18
96
0
83
23
10
15
50
1.75
29989149--29989186
18
2.1
18
85
9
51
44
7
15
31
1.75
29992194--29992276
31
2.7
31
88
1
114
33
8
10
46
1.69
29996005--29996229
45
5.0
45
89
2
324
44
11
20
23
1.84
29996005--29996229
92
2.5
91
89
4
330
44
11
20
23
1.84
29996074--29996230
23
6.8
24
66
22
86
44
10
21
23
1.83
29997117--29997158
21
2.0
22
86
9
61
64
0
7
28
1.20
29998673--29998717
18
2.5
18
85
0
72
48
6
0
44
1.29
30000227--30000286
25
2.4
24
75
8
57
65
11
11
11
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30002840--30002886
20
2.3
20
81
0
58
10
21
36
31
1.88
30006020--30006067
19
2.5
20
77
19
57
66
0
0
33
0.92
30006448--30006518
25
2.9
24
78
17
67
46
0
1
52
1.09
30006590--30006643
19
2.8
18
76
15
54
31
1
1
64
1.14
30006595--30006650
20
2.7
22
77
20
59
32
0
1
66
1.03
30008557--30008747
51
3.8
51
84
6
201
25
15
28
30
1.96
30010088--30010142
20
2.8
20
81
10
67
25
21
14
38
1.92
30011644--30011685
13
3.2
13
90
6
59
69
4
4
21
1.26
30012886--30012953
12
5.7
12
69
19
52
64
0
25
10
1.24
30012909--30012942
15
2.3
15
89
0
50
67
0
29
2
1.05
30012896--30012948
18
2.8
20
68
26
53
64
0
24
11
1.26
30014729--30014791
20
3.1
20
80
11
65
25
19
15
39
1.91
30014739--30014793
20
2.8
20
82
0
74
23
20
16
40
1.91
30017993--30018079
43
2.0
43
95
0
156
35
27
11
25
1.90
30020449--30020501
21
2.6
21
80
14
65
66
5
0
28
1.15
30021840--30021956
45
2.6
44
82
4
146
24
20
22
32
1.98
30021977--30022087
44
2.5
43
83
15
129
28
24
20
26
1.99
30021875--30022126
130
1.9
130
86
1
353
27
22
21
28
1.99
30022108--30022215
44
2.5
44
86
3
146
29
17
21
31
1.96
30021875--30022213
128
2.6
129
81
6
312
27
21
21
29
1.99
30022240--30022758
260
2.0
260
90
0
813
27
25
19
27
1.99
30022806--30022945
45
3.2
45
74
4
158
27
27
17
27
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30022792--30022961
88
1.9
88
92
0
286
26
25
20
28
1.99
30022825--30022960
44
3.1
44
72
4
139
27
25
19
27
1.99
30024198--30024262
18
3.6
17
80
10
76
1
23
0
75
0.89
30024194--30024252
25
2.4
25
85
2
75
1
25
0
72
0.93
30024207--30024263
12
4.7
11
83
16
69
1
19
0
78
0.83
30024207--30024265
24
2.4
25
91
2
93
1
20
0
77
0.85
30024258--30024291
14
2.5
14
85
4
52
14
23
0
61
1.33
30025086--30025151
25
2.6
25
85
9
80
54
6
19
19
1.65
30031283--30031336
21
2.6
21
85
5
74
68
3
0
27
1.06
30031283--30031346
21
3.0
20
82
15
67
70
3
0
26
1.02
30031298--30031353
14
4.0
15
74
21
59
75
0
0
25
0.81
30031299--30031354
28
2.0
27
83
10
69
76
0
0
23
0.78
30033331--30033374
23
2.0
22
81
4
52
9
22
2
65
1.32
30033935--30034008
30
2.5
30
97
0
139
13
2
25
58
1.49
30034456--30034526
22
3.3
22
73
11
83
23
19
19
36
1.95
30036540--30036573
13
2.5
14
85
9
52
5
2
44
47
1.42
30037612--30037656
17
2.6
17
89
3
63
11
24
46
17
1.81
30038164--30038204
16
2.8
15
82
10
50
29
12
17
41
1.85
30038965--30038992
11
2.5
11
100
0
56
89
0
10
0
0.49
30043023--30043171
53
2.8
53
91
2
228
32
8
17
41
1.80
30043537--30043572
16
2.2
16
90
0
54
77
5
5
11
1.10
30060949--30061129
43
4.2
43
73
9
147
29
28
17
23
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30060903--30061080
86
2.1
85
81
5
198
30
28
17
23
1.97
30064193--30064230
6
6.7
6
87
6
53
81
2
0
15
0.80
30064194--30064231
12
3.5
11
89
10
60
78
2
0
18
0.86
30064492--30064540
22
2.2
22
100
0
98
73
4
18
4
1.15
30065458--30065531
7
10.4
7
81
8
51
37
41
0
20
1.52
30065483--30065529
14
3.4
13
80
13
58
31
48
0
19
1.49
30065483--30065529
21
2.2
21
88
0
67
31
48
0
19
1.49
30065814--30065846
14
2.3
15
94
5
59
36
33
0
30
1.58
30066251--30066363
41
2.8
40
88
5
172
27
29
21
22
1.99
30066405--30066495
40
2.3
38
81
7
103
20
19
23
36
1.95
30066910--30066983
19
3.7
20
80
10
80
41
1
5
51
1.33
30071176--30071226
18
2.8
18
75
0
66
13
43
3
39
1.63
30073941--30074027
33
2.7
32
77
12
95
49
16
8
26
1.73
30074019--30074058
20
2.0
20
85
0
53
50
10
10
30
1.69
30074007--30074073
34
1.9
35
87
3
100
46
11
8
32
1.72
30074042--30074081
14
2.9
14
84
0
53
42
17
7
32
1.77
30075428--30075458
15
2.1
15
93
0
53
51
32
6
9
1.60
30082028--30082471
51
8.7
51
77
5
391
30
14
25
29
1.95
30082027--30082477
102
4.4
102
88
1
586
30
14
25
30
1.94
30085391--30085445
27
2.1
27
82
3
67
20
14
21
43
1.87
30085412--30085712
27
11.2
26
82
4
271
18
18
18
44
1.87
30085427--30085712
81
3.5
82
81
9
327
18
18
18
44
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30108853--30108899
24
2.0
24
82
0
58
38
6
14
40
1.72
30129329--30129431
32
3.3
30
85
8
134
23
21
18
36
1.95
30136388--30136431
22
2.0
21
83
12
54
40
0
0
59
0.98
30145579--30145631
17
3.4
17
67
20
51
11
22
41
24
1.86
30145579--30145673
30
3.2
30
88
8
140
11
24
41
23
1.87
30150006--30150038
14
2.4
14
90
5
50
66
0
9
24
1.20
30150858--30150971
19
5.8
19
84
5
138
38
14
9
36
1.80
30150858--30150970
40
2.8
40
92
4
176
38
14
9
37
1.79
30150858--30150971
59
1.9
58
89
1
174
38
14
9
36
1.80
30151491--30151761
44
6.2
44
77
8
248
30
25
16
27
1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228