genome.fa.s23.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  127  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37674016--37674228	103	2.1	104	90	1	331	35	17	20	26	1.95
37674273--37674329	27	2.1	27	83	6	71	22	21	19	36	1.95
37674294--37674347	27	2.0	26	85	3	72	22	18	20	38	1.93
37674656--37674712	26	2.2	26	80	3	60	28	19	17	35	1.94
37691031--37691251	40	5.6	38	83	9	234	26	22	25	25	2.00
37691031--37691251	80	2.8	78	83	9	272	26	22	25	25	2.00
37698923--37699147	40	5.7	40	82	9	248	25	21	26	25	2.00
37698923--37699147	79	2.8	80	87	5	305	25	21	26	25	2.00
37698923--37699147	80	2.8	80	85	6	305	25	21	26	25	2.00
37698923--37699180	80	3.3	78	82	9	274	26	21	26	25	1.99
37704078--37704170	45	2.1	45	89	4	143	29	19	21	30	1.97
37707073--37707097	7	3.6	7	100	0	50	32	0	24	44	1.54
37721033--37721059	12	2.2	12	100	0	54	51	7	0	40	1.30
37721508--37721603	27	3.4	28	89	2	131	27	12	28	32	1.93
37721508--37721618	27	4.0	27	82	6	89	28	11	26	33	1.91
37729437--37729534	27	3.5	28	88	2	135	27	13	27	31	1.94
37729437--37729547	27	4.0	27	83	6	107	29	12	25	32	1.93
37742188--37742372	40	4.7	40	82	6	216	25	27	22	24	2.00
37742188--37742370	79	2.3	81	82	7	214	25	27	21	25	1.99
37750100--37750283	40	4.6	40	78	10	198	25	27	22	25	2.00
37750100--37750284	79	2.3	82	83	7	229	25	27	22	24	2.00
37761430--37761636	27	7.7	27	85	1	245	42	21	16	18	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37761871--37761977	26	4.1	26	95	0	178	20	22	19	37	1.94
37762079--37762328	28	8.9	28	81	1	252	24	20	21	34	1.97
37763549--37763688	53	2.6	54	81	3	149	46	20	14	19	1.84
37763602--37763691	27	3.3	27	88	0	135	44	21	14	20	1.86
37764054--37764233	28	6.5	28	85	3	220	26	21	22	30	1.98
37764054--37764233	56	3.2	56	86	2	256	26	21	22	30	1.98
37765094--37765140	23	2.0	24	84	12	62	42	2	0	55	1.12
37770600--37771499	446	2.0	446	94	0	1566	35	18	14	31	1.91
37779681--37779768	44	2.0	44	93	4	151	34	5	18	42	1.74
37808726--37808764	16	2.4	16	86	0	60	23	23	0	53	1.46
37808983--37809009	14	1.9	14	100	0	54	48	0	7	44	1.31
37823830--37823865	12	2.9	12	87	4	54	66	2	16	13	1.36
37825853--37825939	34	2.6	34	90	0	129	17	12	27	42	1.85
37833356--37833390	15	2.4	14	90	4	52	51	0	0	48	1.00
37834399--37834540	61	2.3	62	81	3	162	26	21	26	26	1.99
37837490--37837549	27	2.2	26	80	13	68	48	1	1	48	1.21
37837507--37837549	12	3.3	12	79	17	50	46	2	2	48	1.27
37845139--37845170	4	8.0	4	92	0	55	78	0	0	21	0.76
37849253--37849283	15	2.1	15	100	0	62	25	0	0	74	0.82
37851931--37851963	12	2.6	13	90	9	59	33	0	12	54	1.37
37855987--37856019	13	2.4	14	90	5	50	78	3	12	6	1.04
37865569--37865681	27	4.2	26	80	6	136	44	18	17	19	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37865569--37865681	54	2.1	54	86	6	158	44	18	17	19	1.87
37887916--37888013	42	2.4	41	81	11	112	23	19	24	32	1.97
37892761--37892829	27	2.6	27	84	8	90	47	23	13	15	1.80
37892785--37892847	27	2.3	27	86	5	83	47	22	14	15	1.81
37901862--37901919	11	5.4	11	70	4	55	17	1	46	34	1.58
37904421--37904461	19	2.2	20	86	8	59	36	9	2	51	1.48
37904736--37904770	18	2.0	18	88	5	54	25	14	5	54	1.62
37905603--37906000	195	2.0	196	98	0	762	31	17	13	37	1.88
37906427--37906506	37	2.2	37	86	0	106	17	8	28	45	1.78
37929189--37929227	20	2.0	20	90	10	62	12	5	30	51	1.62
37930260--37930354	29	3.2	28	77	11	93	24	22	16	36	1.94
37930276--37930380	29	3.6	29	79	2	102	22	25	13	38	1.91
37930260--37930382	59	2.1	58	83	4	158	24	24	15	35	1.94
37930303--37930554	115	2.2	116	85	5	332	23	25	15	35	1.94
37930396--37930603	86	2.4	86	84	4	251	24	26	13	35	1.92
37930362--37930603	29	8.4	29	78	7	183	24	26	13	35	1.93
37930483--37930599	57	2.1	57	85	0	153	27	25	12	34	1.92
37930847--37930898	14	3.8	14	73	12	54	48	7	0	44	1.31
37930840--37930905	28	2.4	28	86	0	96	48	13	0	37	1.43
37930856--37930913	28	2.1	28	83	0	71	48	15	0	36	1.45
37931886--37931926	21	2.0	21	90	0	64	7	24	0	68	1.15
37933676--37933716	22	1.9	21	90	5	64	12	46	24	17	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37944651--37944858	47	4.4	47	95	0	362	31	9	28	29	1.89
37944826--37944888	30	2.1	30	93	0	108	31	12	23	31	1.92
37944779--37944935	77	2.0	77	95	0	278	31	10	27	30	1.90
37944732--37944961	124	1.9	123	92	0	388	32	8	27	31	1.87
37944856--37945012	47	3.4	47	87	1	217	31	9	30	28	1.89
37945131--37945209	37	2.1	37	86	4	106	25	17	30	26	1.97
37954005--37954064	29	2.1	29	90	0	93	10	16	40	33	1.82
37956579--37956871	27	10.8	27	85	2	354	42	20	17	20	1.90
37956582--37956856	136	2.0	135	88	1	406	43	19	17	19	1.88
37961032--37961172	40	3.6	40	70	5	126	19	20	21	38	1.94
37961067--37961137	20	3.5	20	66	0	52	19	25	21	33	1.97
37974110--37974174	20	3.3	20	93	2	105	26	16	29	27	1.97
37974110--37974185	20	3.8	20	91	5	102	27	15	30	26	1.96
37978560--37978624	21	3.1	21	77	18	73	9	18	1	70	1.21
37979489--37979514	13	2.0	13	100	0	52	46	7	7	38	1.61
37980587--37980875	50	5.8	50	86	3	388	26	19	31	21	1.98
37980587--37980875	97	2.9	100	84	4	388	26	19	31	21	1.98
37982718--37982811	46	2.0	46	89	0	143	35	22	19	23	1.96
37989589--37989824	51	4.6	51	74	10	178	30	12	25	30	1.93
37989585--37989824	102	2.4	102	89	1	374	30	13	25	30	1.94
37989592--37989911	102	3.1	101	83	4	225	32	12	25	29	1.93
37990070--37990150	38	2.1	39	88	4	121	43	2	19	34	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37992630--37992761	40	3.3	40	83	2	167	27	28	20	23	1.99
37992746--37992823	40	1.9	41	82	10	97	26	28	21	23	1.99
38000508--38000730	40	5.6	40	85	3	236	26	27	21	24	1.99
38000662--38000739	40	1.9	41	82	10	97	26	28	21	23	1.99
38009601--38009771	40	4.3	40	94	0	279	23	21	28	26	1.99
38009548--38009773	80	2.8	80	86	2	294	24	21	27	26	1.99
38009548--38009771	120	1.9	120	82	3	281	24	21	27	26	1.99
38009548--38009806	80	3.2	80	83	4	258	25	21	27	25	1.99
38009548--38009806	120	2.2	120	79	4	265	25	21	27	25	1.99
38022917--38022981	30	2.2	30	100	0	130	36	12	27	23	1.90
38029348--38029453	48	2.2	48	89	0	158	16	14	28	40	1.88
38041356--38041539	101	1.8	102	86	3	273	25	16	26	32	1.96
38041408--38041539	51	2.6	49	80	9	149	24	16	26	32	1.96
38041544--38041638	45	2.1	45	94	0	163	27	17	23	31	1.97
38047770--38047965	39	4.9	39	85	5	209	26	21	27	24	2.00
38047770--38047965	79	2.5	80	82	7	222	26	21	27	24	2.00
38047773--38047988	40	5.4	40	82	6	165	26	21	27	24	1.99
38056012--38056235	39	5.7	40	84	7	246	24	22	28	25	2.00
38056012--38056235	79	2.8	80	83	6	267	24	22	28	25	2.00
38056012--38056235	40	5.7	40	85	5	260	24	22	28	25	2.00
38056065--38056268	79	2.6	79	83	5	209	25	21	27	25	1.99
38058234--38058412	88	2.0	88	97	0	340	38	17	14	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38066949--38067126	27	6.6	27	84	3	205	29	28	15	26	1.96
38066970--38067125	82	1.9	81	88	3	233	29	28	15	26	1.96
38070910--38071034	50	2.5	50	76	0	142	24	22	30	22	1.99
38071308--38071346	20	2.0	20	90	10	62	56	5	23	15	1.59
38072842--38072885	23	1.9	23	86	9	63	47	6	27	18	1.73
38078172--38078411	50	4.7	49	83	5	255	22	29	20	26	1.99
38078172--38078411	99	2.3	101	83	4	277	22	29	20	26	1.99
38081415--38081441	12	2.2	12	100	0	54	85	0	14	0	0.61
38081831--38081881	18	2.8	18	81	0	57	37	9	37	15	1.81
38081841--38082055	6	36.8	6	71	7	129	33	13	31	20	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228