genome.fa.s23.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  115  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33775854--33775972	50	2.3	50	80	5	132	32	16	11	38	1.85
33777624--33777686	26	2.4	26	80	17	69	34	23	7	33	1.84
33782165--33782198	13	2.8	12	86	8	50	55	8	11	23	1.63
33783211--33783324	26	4.4	26	72	4	95	33	22	8	35	1.85
33789600--33789663	31	2.1	31	100	0	128	37	3	9	50	1.51
33791719--33791816	27	3.5	28	86	5	119	32	29	13	24	1.93
33796963--33796997	3	11.7	3	100	0	70	31	0	0	68	0.90
33799201--33799257	19	3.0	19	77	7	62	22	19	0	57	1.40
33801900--33801992	37	2.5	38	84	5	118	30	40	13	15	1.86
33805983--33806035	6	9.0	6	91	4	81	71	16	0	11	1.13
33814033--33814380	47	7.4	47	92	0	543	32	8	29	29	1.87
33814499--33814577	37	2.1	37	88	4	115	25	18	30	25	1.98
33821172--33821462	50	5.7	50	88	2	402	26	23	30	20	1.99
33821177--33821494	150	2.1	152	85	3	424	26	22	29	21	1.99
33828027--33828316	50	5.7	50	84	2	319	27	21	29	22	1.99
33832292--33832461	40	4.3	40	85	1	207	23	21	30	24	1.99
33832314--33832496	79	2.3	80	80	1	208	25	21	29	24	1.99
33862359--33862887	262	2.0	262	98	0	1031	37	8	19	35	1.81
33870689--33870714	13	2.0	13	100	0	52	53	0	7	38	1.30
33877624--33877801	27	6.6	27	85	3	214	26	14	28	30	1.95
33877625--33877780	82	1.9	81	89	3	242	26	14	28	30	1.95
33877621--33877801	82	2.2	81	84	2	238	27	14	27	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33885370--33885547	27	6.6	27	85	3	214	26	14	28	30	1.95
33885371--33885526	82	1.9	81	89	3	242	26	14	28	30	1.95
33885367--33885547	82	2.2	81	84	2	238	27	14	27	30	1.95
33899515--33899541	14	1.9	14	100	0	54	37	22	25	14	1.93
33899852--33899891	18	2.2	19	90	4	64	7	37	0	55	1.29
33905871--33906134	40	6.7	40	87	5	333	25	26	21	25	2.00
33909374--33909412	18	2.2	18	85	0	51	33	2	17	46	1.62
33923852--33924192	51	6.8	51	77	10	312	29	14	25	30	1.95
33923856--33923938	26	3.2	26	65	27	68	30	12	25	32	1.92
33923857--33924191	100	3.3	100	82	8	373	28	14	25	30	1.95
33934056--33934320	40	6.6	40	85	3	291	26	28	20	24	1.99
33934056--33934267	80	2.6	80	90	0	334	26	28	20	24	1.99
33934252--33934329	40	1.9	41	82	10	97	26	28	21	23	1.99
33939012--33939277	103	2.6	104	90	0	417	19	20	29	29	1.97
33946064--33946124	30	2.0	30	87	0	86	36	6	24	32	1.81
33947607--33947645	20	2.0	20	100	0	78	33	0	15	51	1.44
33951914--33952016	13	8.1	13	73	12	72	0	33	0	66	0.92
33951936--33952083	4	36.0	4	76	16	117	0	31	0	68	0.90
33951909--33952094	38	4.9	39	77	15	178	0	34	0	65	0.93
33952229--33952270	21	2.0	21	95	0	75	59	0	7	33	1.25
33956313--33956358	24	1.9	24	82	8	58	58	0	8	32	1.28
33956320--33956389	27	2.6	28	84	8	83	57	0	10	32	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33972722--33972937	42	5.1	42	78	9	199	33	25	16	24	1.96
33981141--33981433	50	5.8	50	86	0	388	21	30	21	25	1.99
33986196--33986237	21	2.0	21	86	9	59	52	9	19	19	1.72
33987590--33987695	21	5.1	21	68	15	67	17	28	19	33	1.95
33987589--33987756	41	4.1	41	84	0	192	19	26	17	35	1.94
33992213--33992262	23	2.2	23	100	0	100	28	16	20	36	1.93
33997889--33997948	20	2.9	22	70	12	63	30	31	8	30	1.87
33997873--33998084	41	5.2	41	86	0	244	19	26	15	37	1.92
33997953--33998019	20	3.3	20	66	12	55	14	29	17	37	1.91
33999042--33999097	25	2.2	25	96	0	103	41	21	16	21	1.90
34010073--34010151	37	2.1	37	88	0	113	25	30	18	25	1.98
34010270--34010878	47	12.7	47	94	1	986	29	29	8	32	1.87
34010270--34010878	145	4.2	141	93	2	986	29	29	8	32	1.87
34015552--34015586	16	2.1	17	89	5	54	40	0	37	22	1.55
34015557--34015592	16	2.1	18	90	10	58	30	0	41	27	1.56
34021639--34021677	16	2.5	15	91	8	60	51	2	0	46	1.14
34025877--34025910	18	1.9	18	88	5	52	41	0	35	23	1.55
34054078--34054106	12	2.3	13	94	5	51	65	6	6	20	1.40
34057727--34057760	16	2.1	16	94	0	59	23	5	8	61	1.47
34059932--34059964	17	2.0	17	94	5	59	15	54	0	30	1.41
34071394--34071494	49	2.1	49	85	10	136	26	14	27	30	1.95
34082474--34082916	28	15.8	28	87	0	625	31	22	21	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34083026--34083102	26	3.0	26	77	7	84	35	22	22	20	1.96
34083254--34083613	80	4.5	80	84	4	413	21	16	20	40	1.91
34083254--34083613	27	13.4	27	81	6	376	21	16	20	40	1.91
34085395--34085439	23	2.0	23	90	0	72	40	24	0	35	1.56
34096855--34096904	21	2.4	21	89	0	73	36	8	30	26	1.85
34096869--34096923	21	2.6	22	77	8	60	45	7	25	21	1.77
34099576--34099643	22	3.1	22	73	0	73	32	16	26	25	1.96
34099585--34099651	22	3.0	22	73	0	71	32	22	23	20	1.98
34100007--34100120	60	1.9	60	83	0	147	21	21	18	39	1.93
34100083--34100128	20	2.3	21	88	11	78	21	19	21	36	1.95
34100019--34100140	60	2.0	60	80	0	136	21	19	19	39	1.93
34106972--34107018	23	2.1	21	84	7	58	48	31	2	17	1.58
34110027--34110090	25	2.6	25	85	2	76	34	17	21	26	1.95
34123361--34123872	100	5.1	100	89	0	727	29	20	22	27	1.98
34123355--34123851	50	9.9	50	70	2	280	28	20	23	27	1.99
34123411--34123872	50	9.2	50	71	2	309	30	20	22	27	1.98
34124534--34124576	9	4.6	9	80	11	50	37	32	18	11	1.87
34127323--34127549	80	2.8	81	82	10	270	27	21	25	24	1.99
34127363--34127549	40	4.7	40	92	2	254	29	20	25	24	1.99
34127363--34127582	80	2.8	79	82	10	218	30	20	25	24	1.99
34131073--34131113	7	5.2	8	91	8	59	75	0	12	12	1.05
34131065--34131128	22	3.0	21	82	15	69	71	0	14	14	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34131080--34131121	7	5.7	7	94	5	66	73	0	14	11	1.09
34131080--34131134	15	3.7	15	85	9	69	69	0	16	14	1.20
34132613--34133344	50	14.5	50	67	4	374	28	21	22	26	1.99
34132624--34133344	100	7.1	100	86	4	924	28	21	22	26	1.99
34132624--34133343	309	2.4	300	83	4	938	28	21	22	26	1.99
34141715--34141757	8	5.4	8	91	0	68	48	2	2	46	1.27
34167750--34167814	31	2.1	31	91	8	107	36	10	23	29	1.88
34170797--34170843	23	2.0	23	87	0	67	44	17	10	27	1.81
34184964--34185010	23	2.0	24	91	4	78	19	19	14	46	1.84
34190351--34190401	25	2.0	25	100	0	102	31	23	17	27	1.97
34192372--34192431	26	2.3	27	80	13	72	25	3	18	53	1.60
34205901--34205939	20	2.0	20	84	0	51	43	12	2	41	1.56
34212207--34212307	27	3.5	27	76	17	112	35	1	16	45	1.59
34212542--34212591	14	3.5	14	78	5	55	72	0	2	26	0.96
34212551--34212589	15	2.5	15	87	4	51	79	0	2	17	0.84
34212537--34212589	8	7.0	8	77	16	51	73	0	1	24	0.93
34212982--34213111	37	3.5	37	75	8	122	8	26	14	50	1.72
34214134--34214263	70	1.9	70	86	1	190	23	7	26	42	1.81
34215378--34215466	37	2.4	37	88	3	135	41	14	10	33	1.79
34215524--34215639	33	3.5	33	84	4	171	45	14	6	32	1.72
34218680--34218771	47	1.9	48	93	2	159	46	4	6	42	1.49
34218758--34218819	26	2.3	26	83	8	70	43	0	3	53	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34218864--34219391	120	4.4	120	95	1	927	42	2	5	49	1.39
34218994--34219036	15	2.8	16	79	10	54	44	0	2	53	1.13
34219221--34219255	18	2.0	17	88	5	52	45	0	0	54	0.99
34219340--34219373	17	2.1	17	88	5	52	50	0	0	50	1.00
34222866--34222895	15	2.0	15	93	0	51	53	30	0	16	1.44
34222858--34222902	22	2.0	22	86	0	63	53	28	0	17	1.44
34233527--34233573	24	2.0	24	95	0	85	23	31	10	34	1.89
34234425--34234747	43	7.6	43	76	5	208	30	27	15	26	1.96
34236187--34236244	2	29.0	2	100	0	116	50	0	50	0	1.00
34237026--34237104	39	2.0	39	90	0	122	35	22	11	30	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228