genome.fa.s23.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  162  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48616374--48616399	11	2.4	11	100	0	52	26	0	0	73	0.84
48616368--48616413	17	2.7	17	79	0	56	39	0	0	60	0.97
48616397--48616516	11	11.4	11	73	20	87	40	2	0	57	1.12
48616390--48616531	41	3.4	41	87	3	196	40	2	0	57	1.10
48616408--48616467	30	2.0	30	83	6	77	35	3	0	61	1.12
48616473--48616531	21	2.8	20	76	14	66	40	1	0	57	1.09
48616498--48616557	22	2.8	22	83	14	72	40	1	1	56	1.19
48617656--48617751	31	3.1	31	93	3	165	32	9	12	45	1.74
48618053--48618086	4	9.0	4	93	6	54	26	0	0	73	0.83
48618278--48618394	44	2.7	46	83	12	135	68	8	13	9	1.39
48618293--48618394	44	2.3	44	89	1	159	66	8	13	10	1.44
48622544--48622652	32	3.4	32	97	1	202	31	11	11	45	1.76
48624724--48624780	13	4.9	13	68	27	56	49	1	0	49	1.11
48624739--48624825	19	4.8	18	73	12	88	42	4	0	52	1.21
48625228--48625328	51	2.0	51	81	11	118	45	16	0	36	1.55
48627781--48628116	23	14.4	23	67	18	128	41	16	11	31	1.83
48627782--48627952	71	2.4	70	78	11	172	39	18	12	29	1.87
48627832--48627969	73	1.9	72	82	8	172	39	18	13	29	1.88
48627909--48628119	92	2.3	90	91	1	350	42	14	11	31	1.81
48627909--48628119	45	4.6	45	91	4	334	42	14	11	31	1.81
48628469--48628503	15	2.3	15	90	9	54	51	22	0	25	1.48
48629146--48629261	43	2.7	43	84	12	166	27	30	20	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48638162--48638210	25	2.0	25	100	0	98	48	6	16	28	1.69
48646115--48646282	83	2.0	83	96	0	309	36	16	22	24	1.94
48652079--48652128	23	2.2	22	80	13	57	36	8	12	44	1.71
48656028--48656096	17	3.8	18	78	12	61	34	0	1	63	1.03
48656050--48656096	12	3.1	16	75	25	57	31	0	2	65	1.04
48656126--48656154	2	15.0	2	92	7	51	51	0	0	48	1.00
48659863--48659902	21	1.9	21	89	0	62	15	32	22	30	1.94
48669685--48669724	16	2.4	16	87	8	53	67	12	0	20	1.22
48671463--48671600	42	3.2	43	64	20	106	28	23	21	25	1.99
48671404--48671758	87	4.1	87	90	0	505	29	22	23	24	1.99
48671962--48672063	44	2.3	44	83	3	125	31	19	28	20	1.97
48671986--48672298	44	7.2	44	69	7	145	30	21	23	24	1.99
48671878--48672298	217	1.9	217	92	0	707	29	20	24	24	1.99
48693746--48693786	15	2.8	14	85	10	55	73	9	9	7	1.26
48697786--48697845	18	3.3	18	76	19	54	26	3	0	70	1.03
48702949--48702982	17	2.0	17	88	0	50	58	2	8	29	1.43
48706186--48706211	3	8.7	3	100	0	52	34	0	34	30	1.58
48708928--48708977	18	2.6	19	81	6	57	20	26	2	52	1.57
48746486--48746511	13	2.0	13	100	0	52	30	15	0	53	1.42
48757147--48757409	40	6.6	40	87	3	298	25	20	26	26	1.99
48757213--48757444	80	2.9	80	83	2	218	26	20	27	25	1.99
48760717--48760878	41	4.0	41	83	7	168	33	26	18	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48760717--48760874	82	1.9	82	83	5	203	33	26	18	20	1.96
48768508--48768627	41	2.9	41	86	2	152	35	25	17	21	1.95
48776195--48776314	41	2.9	41	86	2	152	35	25	17	21	1.95
48789212--48789281	27	2.6	27	95	2	113	31	28	12	27	1.93
48789212--48789309	28	3.5	28	90	2	135	31	28	13	26	1.94
48793577--48793664	30	2.9	31	79	12	94	37	17	15	29	1.91
48794782--48794843	30	2.0	31	84	9	83	35	14	1	48	1.54
48796562--48796608	22	2.1	22	96	0	85	61	0	6	31	1.21
48797155--48797234	39	2.1	39	97	0	151	32	25	18	23	1.97
48807799--48808041	50	4.8	50	89	0	360	25	22	30	21	1.99
48810101--48810149	18	2.8	16	80	20	53	73	0	6	20	1.04
48810140--48810182	21	2.0	22	86	4	61	72	4	4	18	1.20
48812653--48812685	16	2.0	17	88	5	50	45	3	12	39	1.57
48824870--48824979	56	2.0	56	98	0	211	34	4	4	56	1.40
48824935--48824973	21	1.9	20	84	5	51	38	2	0	58	1.12
48827134--48827196	32	2.0	32	84	3	83	44	7	19	28	1.78
48831547--48831594	21	2.3	21	82	10	64	29	29	27	14	1.95
48834075--48834121	23	2.1	21	81	14	51	25	2	25	46	1.64
48839123--48839223	31	3.3	30	77	13	116	53	3	0	41	1.26
48839122--48839249	61	2.1	61	92	0	211	51	4	1	42	1.32
48854290--48854327	9	4.3	9	86	3	51	68	5	2	23	1.23
48863282--48863337	27	2.1	27	100	0	112	46	14	0	39	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48863868--48863980	43	2.6	43	87	2	156	29	22	19	29	1.98
48864404--48864529	66	1.9	65	81	12	150	14	24	18	42	1.87
48869535--48869578	18	2.5	17	80	16	54	11	9	2	77	1.08
48870365--48870407	16	2.7	15	89	10	68	16	0	2	81	0.79
48874483--48874531	18	2.7	18	84	12	57	81	4	12	2	0.91
48874498--48874538	12	3.3	12	83	6	55	80	2	17	0	0.82
48874483--48874539	13	4.5	13	80	6	64	80	3	14	1	0.92
48874483--48874539	25	2.3	25	84	6	80	80	3	14	1	0.92
48874811--48874898	45	1.9	47	81	4	108	27	14	7	50	1.71
48874872--48875067	108	1.8	108	85	2	277	26	17	9	46	1.78
48875510--48875648	44	3.2	43	66	17	115	28	21	23	27	1.99
48875511--48876290	88	8.9	88	84	1	876	28	21	24	25	1.99
48875712--48876043	44	7.5	43	66	12	154	28	23	24	23	2.00
48876369--48876553	95	1.9	95	88	4	275	28	20	22	28	1.98
48876566--48877354	84	9.4	84	90	4	1164	33	22	21	22	1.97
48876567--48877444	211	4.2	210	83	7	1070	34	22	20	22	1.97
48876570--48877354	251	3.1	251	90	2	1177	33	22	21	22	1.97
48878149--48878191	18	2.5	17	82	14	52	11	9	2	76	1.10
48878978--48879044	7	9.4	7	82	9	82	16	0	1	82	0.75
48880439--48880506	35	1.9	35	93	0	118	38	5	10	45	1.63
48880785--48880820	15	2.4	15	100	0	72	13	5	5	75	1.17
48881361--48881411	25	2.1	23	82	7	57	23	13	5	56	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48881568--48881604	19	1.9	19	88	0	56	70	5	0	24	1.08
48884053--48884172	40	3.0	40	83	3	125	20	20	20	39	1.93
48888301--48888343	21	2.0	21	82	8	52	13	16	13	55	1.69
48889656--48889784	41	3.2	39	79	4	123	36	21	20	20	1.95
48889656--48889784	39	3.2	38	78	8	123	36	21	20	20	1.95
48892606--48892676	21	3.4	21	80	0	79	33	18	45	2	1.64
48892900--48892933	14	2.4	14	95	0	59	17	8	20	52	1.71
48893049--48893372	42	7.7	42	92	2	483	23	21	20	33	1.97
48893001--48893372	84	4.5	82	87	5	496	25	21	20	32	1.98
48893001--48893371	126	3.0	125	86	4	482	25	21	20	32	1.98
48900800--48900855	21	2.7	21	88	0	85	26	8	35	28	1.87
48903157--48903194	7	5.4	7	90	0	58	42	7	28	21	1.81
48903152--48903194	21	2.0	21	90	0	68	39	9	27	23	1.85
48903157--48903194	14	2.7	14	95	0	67	42	7	28	21	1.81
48903120--48903245	65	1.9	65	90	0	198	34	14	23	27	1.93
48903171--48903393	51	4.4	51	87	0	313	34	14	21	29	1.93
48903173--48903393	102	2.2	101	91	0	352	34	14	21	29	1.93
48909822--48909860	14	2.8	14	88	0	60	46	7	25	20	1.77
48909773--48909896	65	1.9	65	94	0	221	35	14	22	27	1.93
48909838--48909997	44	3.5	43	82	13	194	33	14	24	28	1.94
48909887--48909989	50	2.0	51	90	1	163	33	15	24	27	1.95
48912359--48912730	46	8.6	45	82	12	451	34	14	22	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48912443--48912598	36	4.1	36	78	15	177	37	12	19	30	1.90
48912397--48912730	82	4.0	81	85	7	438	34	14	21	29	1.93
48912363--48912730	128	2.9	126	77	16	414	34	14	22	28	1.93
48921166--48921956	114	6.9	114	94	0	1411	32	15	26	25	1.96
48923771--48923811	17	2.3	19	83	8	59	29	46	2	21	1.64
48925624--48925857	9	25.8	9	75	6	204	48	16	2	31	1.61
48925624--48925857	91	2.6	91	87	2	328	48	16	2	31	1.61
48925679--48925878	91	2.2	91	87	1	258	49	18	2	30	1.61
48931734--48931941	43	4.9	43	92	1	339	23	20	21	35	1.96
48931734--48931941	85	2.4	86	92	1	339	23	20	21	35	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228