genome.fa.s23.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  15  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5248676--5248708	5	6.6	5	100	0	66	39	0	0	60	0.97
5269962--5270025	32	2.0	32	100	0	128	40	18	9	31	1.83
5285797--5285832	18	2.0	18	100	0	72	38	5	0	55	1.23
5288616--5288689	37	2.0	36	97	2	139	32	5	16	45	1.70
5288623--5288680	17	3.2	17	68	13	53	31	3	15	50	1.61
5288688--5288718	9	3.4	9	95	0	53	25	9	22	41	1.84
5291261--5291288	8	3.5	8	100	0	56	78	0	0	21	0.75
5303655--5303705	19	2.8	18	82	14	52	64	3	0	31	1.11
5308702--5308758	23	2.5	22	78	10	62	56	15	1	26	1.50
5310949--5310988	8	5.4	8	88	11	59	75	0	12	12	1.06
5310945--5310989	15	3.2	13	90	9	63	71	0	13	15	1.15
5310945--5310987	21	2.1	20	95	4	77	72	0	13	13	1.13
5312243--5312904	44	15.9	42	69	11	299	29	17	22	29	1.97
5312242--5312681	80	5.3	81	71	14	254	28	18	22	29	1.98
5312244--5312882	124	5.1	124	93	0	1035	29	17	22	30	1.97
5312415--5312760	80	4.2	80	69	15	233	28	17	22	30	1.97
5314453--5314489	3	12.0	3	88	5	56	32	2	0	64	1.07
5314998--5315389	109	3.6	109	88	1	545	32	14	18	34	1.91
5325379--5325414	10	3.5	10	85	7	54	36	0	0	63	0.94
5325404--5325536	56	2.3	57	82	10	155	43	0	3	51	1.24
5325646--5325738	45	2.1	44	88	6	134	36	25	4	33	1.76
5334749--5334794	22	2.1	22	100	0	92	54	8	8	28	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5335145--5335195	6	8.5	6	82	18	54	78	0	5	15	0.93
5345393--5345457	22	3.2	20	79	18	71	40	6	6	47	1.53
5350358--5350382	10	2.5	10	100	0	50	64	8	12	16	1.49
5352282--5352344	30	2.0	31	81	6	74	22	19	11	47	1.80
5357036--5357228	41	4.7	41	95	0	332	24	30	19	25	1.98
5363042--5363066	11	2.3	11	100	0	50	44	0	16	40	1.47
5364567--5365119	114	4.8	114	74	13	389	29	18	25	26	1.98
5366217--5366263	7	6.7	7	95	0	85	2	0	53	44	1.12
5366217--5366275	21	2.8	21	84	5	75	3	0	47	49	1.18
5368472--5368507	16	2.2	16	95	0	63	27	11	8	52	1.65
5368567--5368705	67	2.1	67	98	0	269	36	4	13	45	1.64
5368924--5368958	17	2.1	17	88	0	52	45	14	0	40	1.45
5368960--5369018	13	4.5	13	87	8	75	40	10	1	47	1.47
5369676--5369906	9	26.4	9	71	14	171	46	20	1	31	1.61
5369718--5369777	25	2.3	25	88	5	84	50	21	0	28	1.49
5369710--5369784	34	2.2	34	87	0	105	49	21	1	28	1.58
5369739--5369810	35	2.0	36	86	10	103	50	20	0	29	1.49
5369717--5369884	62	2.7	62	78	13	179	46	20	1	31	1.59
5369707--5369871	87	1.9	86	81	5	197	46	20	1	30	1.61
5369722--5369907	34	5.7	33	72	19	149	46	20	1	31	1.60
5369744--5369919	25	6.8	25	71	12	106	44	20	2	32	1.64
5375421--5375470	21	2.4	21	86	0	73	36	18	44	2	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5375864--5376000	42	3.3	41	92	2	222	25	21	21	31	1.98
5376095--5376138	21	2.1	21	86	0	61	40	27	20	11	1.86
5377698--5377748	16	3.3	15	74	17	50	13	49	7	29	1.70
5378418--5378458	19	2.0	21	90	9	68	46	0	7	46	1.30
5380262--5380415	77	2.0	77	97	0	290	39	18	13	27	1.89
5388486--5388636	78	1.9	78	94	0	266	34	21	18	25	1.96
5391486--5391513	14	2.0	14	100	0	56	50	14	14	21	1.78
5394091--5394141	18	2.8	18	77	11	59	39	9	0	50	1.35
5394052--5394152	40	2.6	39	82	4	105	39	8	0	51	1.33
5395743--5395822	24	3.6	23	76	21	80	43	0	0	56	0.99
5395779--5395820	6	7.0	6	100	0	84	33	0	0	66	0.92
5396823--5396930	50	2.2	50	89	0	162	24	12	16	46	1.82
5400187--5400242	18	3.2	18	80	10	80	67	0	5	26	1.11
5400569--5400603	18	1.9	18	94	0	61	8	37	25	28	1.85
5402229--5402268	16	2.6	15	92	7	71	57	5	0	37	1.21
5402507--5402625	56	2.1	57	87	6	170	41	12	13	32	1.82
5402931--5403049	60	2.0	60	91	0	193	55	12	0	31	1.37
5403217--5403250	16	2.1	16	88	5	50	2	23	0	73	0.97
5406489--5406647	43	3.7	43	78	8	130	30	26	18	24	1.98
5407834--5407873	16	2.5	16	91	0	62	47	2	7	42	1.45
5407802--5407858	22	2.6	22	85	0	69	50	1	1	45	1.22
5407866--5408023	59	2.5	67	83	14	217	41	5	7	46	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5407884--5408053	59	2.9	59	96	0	304	41	5	8	44	1.60
5409075--5409275	43	4.7	43	86	3	278	27	15	24	32	1.96
5421876--5421907	16	2.0	17	88	11	50	53	3	0	43	1.16
5422003--5422092	44	2.0	46	82	8	114	34	3	4	57	1.35
5431606--5431656	17	3.1	16	77	11	50	62	3	0	33	1.13
5438083--5438123	21	2.0	21	95	0	73	34	12	31	21	1.91
5438748--5438808	30	2.1	30	88	8	92	24	14	14	45	1.83
5439512--5439568	29	2.0	29	86	10	82	56	1	0	42	1.10
5439604--5439706	22	4.4	22	76	20	91	37	0	32	30	1.58
5439607--5439705	51	1.9	51	91	0	162	38	0	32	29	1.58
5439658--5439713	22	2.5	22	97	2	103	41	0	30	28	1.57
5440458--5440510	26	2.0	26	100	0	106	30	3	3	62	1.30
5444404--5444457	27	2.1	26	82	6	65	46	9	3	40	1.54
5446953--5446977	7	3.6	7	100	0	50	16	28	0	56	1.41
5448495--5448538	23	2.0	23	86	4	63	50	6	0	43	1.29
5453284--5453315	12	2.4	14	90	10	50	78	3	3	15	1.01
5455951--5456549	37	16.4	36	81	6	550	34	20	15	28	1.94
5455964--5456549	109	5.4	110	84	4	686	34	20	15	28	1.94
5455968--5456629	37	17.9	39	78	9	273	35	20	15	28	1.93
5459103--5459173	5	13.8	5	75	19	58	39	1	4	54	1.28
5459131--5459173	19	2.3	19	92	8	70	41	2	0	55	1.12
5459103--5459174	24	3.1	23	78	9	76	40	1	4	54	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5464124--5464195	5	14.8	5	74	21	64	38	1	4	55	1.28
5464153--5464195	19	2.3	19	92	8	70	41	2	0	55	1.12
5469149--5469220	5	14.8	5	74	21	64	38	1	4	55	1.28
5469178--5469220	19	2.3	19	92	8	70	41	2	0	55	1.12
5474171--5474242	5	14.8	5	74	21	64	38	1	4	55	1.28
5474200--5474242	19	2.3	19	92	8	70	41	2	0	55	1.12
5478744--5478784	21	2.0	21	85	0	55	58	7	9	24	1.55
5479574--5479636	31	2.1	29	85	11	83	61	9	14	14	1.55
5480819--5480939	59	2.1	59	100	0	242	36	27	3	33	1.73
5496854--5497053	105	1.9	106	97	1	384	31	18	19	31	1.95
5497514--5497619	37	2.8	38	77	16	105	50	0	13	35	1.41
5498080--5498173	48	2.0	48	85	4	127	20	11	27	40	1.87
5500591--5500684	48	2.0	48	87	8	138	19	12	27	40	1.88
5501032--5501088	22	2.6	23	78	18	75	64	3	7	24	1.34
5501801--5501825	13	1.9	13	100	0	50	68	0	8	24	1.16
5504465--5504503	21	1.9	20	84	5	51	10	10	33	46	1.72
5506011--5506069	30	2.0	30	93	0	100	57	15	1	25	1.47
5506798--5506853	27	2.0	29	89	6	89	16	0	33	50	1.45
5506934--5507179	96	2.6	96	82	6	286	40	3	18	38	1.67
5507429--5507482	21	2.7	20	77	5	63	40	24	20	14	1.90
5507431--5507492	21	3.0	19	75	11	52	35	22	22	19	1.96
5508565--5508596	12	2.7	12	100	0	64	53	6	0	40	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5510498--5510549	11	4.7	11	77	17	54	46	0	26	26	1.53
5510947--5510993	23	2.1	23	88	4	69	42	0	25	31	1.55
5510947--5511002	22	2.5	22	83	8	69	44	0	26	28	1.54
5510951--5511002	11	4.7	11	83	9	61	46	0	28	25	1.53
5510204--5511111	454	2.0	450	96	1	1676	40	10	15	33	1.81
5511302--5511349	21	2.3	21	85	7	62	35	0	8	56	1.30
5511373--5511438	29	2.2	29	83	5	78	31	9	16	42	1.80
5511390--5511448	29	2.0	30	93	3	102	28	6	15	49	1.70
5513428--5513523	44	2.2	45	92	1	158	44	12	12	30	1.79
5517484--5517618	57	2.3	56	83	7	155	51	4	0	42	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228