genome.fa.s23.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  119  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35192346--35192370	12	2.1	12	100	0	50	76	0	24	0	0.80
35194782--35194806	12	2.1	12	100	0	50	48	16	28	8	1.74
35196966--35197008	20	2.2	20	86	0	59	23	23	0	53	1.46
35204028--35204107	40	2.0	40	100	0	160	47	7	15	30	1.72
35207753--35207790	16	2.2	18	90	9	62	50	5	5	39	1.48
35209408--35209457	25	2.1	23	85	7	64	44	2	12	42	1.53
35209636--35209667	17	1.9	17	93	6	57	40	0	3	56	1.15
35212318--35212789	239	2.0	238	86	2	671	27	15	17	38	1.91
35218722--35218762	20	2.0	21	85	4	57	48	2	4	43	1.37
35219639--35219703	31	2.1	31	85	0	85	24	3	23	49	1.64
35222021--35222070	25	2.0	25	100	0	100	48	12	12	28	1.76
35224735--35224941	88	2.4	88	83	3	247	34	15	9	39	1.81
35224991--35225322	84	3.9	84	84	3	382	32	11	11	44	1.76
35236153--35236189	16	2.3	16	95	0	65	16	21	18	43	1.88
35242589--35242711	40	3.1	40	84	0	156	37	17	28	16	1.92
35244730--35244766	17	2.1	18	90	10	58	51	5	0	43	1.24
35248566--35248799	33	6.7	33	66	25	117	31	26	19	22	1.98
35248602--35248872	101	2.7	102	87	4	395	31	25	18	23	1.98
35248950--35249239	50	5.6	51	78	12	288	30	27	18	23	1.98
35248944--35249133	101	1.9	101	94	0	335	30	26	19	23	1.98
35249042--35249192	57	2.8	56	88	6	213	31	27	19	21	1.97
35248950--35249235	158	1.8	152	89	4	446	30	27	18	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35251750--35251896	75	2.0	75	89	5	226	15	26	18	39	1.90
35260102--35260333	43	5.5	42	80	3	225	27	25	19	27	1.99
35260251--35260354	43	2.4	43	82	9	122	21	28	18	31	1.96
35260700--35260749	21	2.4	21	86	0	73	6	46	14	34	1.69
35266211--35266245	9	3.9	9	92	0	52	42	0	14	42	1.45
35266216--35266607	9	44.4	9	69	18	218	34	2	20	42	1.64
35266225--35266369	25	5.9	24	79	9	125	33	2	22	41	1.68
35266387--35266452	16	4.3	16	78	16	68	36	1	18	43	1.59
35266466--35266531	16	4.6	15	69	21	52	30	1	22	45	1.62
35266464--35266605	25	5.6	25	78	12	91	30	1	21	45	1.61
35266308--35266561	41	6.0	41	71	15	142	35	2	20	41	1.66
35266667--35266717	13	3.9	13	92	0	75	43	1	9	45	1.48
35266626--35266751	66	1.9	66	80	0	144	45	3	9	42	1.52
35267582--35267606	11	2.3	11	100	0	50	76	0	16	8	1.02
35268398--35268517	60	2.0	59	93	1	204	42	25	8	24	1.82
35269257--35269724	233	2.0	233	85	4	642	29	19	14	35	1.92
35269490--35270056	270	2.1	270	86	2	773	32	18	14	34	1.91
35270489--35270558	14	4.8	14	74	13	61	35	34	0	30	1.58
35270700--35270774	35	2.1	35	83	9	91	37	0	6	56	1.26
35271650--35271780	41	3.2	41	80	5	156	34	27	20	17	1.95
35271835--35272205	123	3.0	124	79	3	374	26	22	18	32	1.97
35288388--35288487	13	7.6	13	73	8	62	36	20	1	43	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35288381--35288482	40	2.6	40	81	7	111	36	20	0	42	1.59
35291467--35291580	44	2.6	44	88	0	156	29	24	16	28	1.97
35291370--35291741	176	2.1	176	88	4	536	26	24	18	30	1.97
35291370--35291629	88	3.0	88	68	13	235	26	25	18	29	1.98
35291395--35291667	88	3.1	87	66	14	225	26	23	19	30	1.98
35291678--35291897	44	5.1	43	85	8	297	30	28	15	25	1.96
35291678--35291899	82	2.6	87	89	5	330	30	27	15	26	1.96
35292119--35292445	44	7.5	43	71	13	170	28	22	19	29	1.98
35291982--35292448	217	2.1	217	87	4	656	28	23	19	29	1.98
35292467--35292968	260	1.9	260	91	1	819	26	25	20	27	1.99
35293036--35293172	44	3.1	45	70	4	125	28	27	17	26	1.98
35293022--35293194	88	2.0	88	87	0	247	27	26	18	27	1.98
35294445--35294485	19	2.2	19	86	0	55	0	21	0	78	0.76
35294453--35294503	6	8.3	6	85	10	68	0	19	0	80	0.71
35294444--35294505	24	2.6	23	87	5	88	0	24	0	75	0.80
35302401--35302578	27	6.6	27	81	3	187	27	15	26	29	1.96
35302402--35302557	82	1.9	81	85	3	215	27	16	26	29	1.96
35302398--35302578	82	2.2	81	81	2	211	27	16	26	29	1.96
35303931--35304243	41	7.6	41	85	2	423	16	21	29	32	1.95
35304570--35304673	21	4.9	21	71	4	73	25	2	25	47	1.66
35304643--35304682	14	2.9	14	92	7	64	25	2	22	50	1.62
35304691--35304734	14	3.1	15	80	9	56	15	0	47	36	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35305096--35305136	21	1.9	22	85	5	57	21	0	39	39	1.54
35311693--35311792	43	2.4	42	80	11	123	25	17	28	30	1.97
35311760--35311856	43	2.3	43	81	3	115	19	20	30	28	1.97
35313995--35314042	25	1.9	25	82	0	60	70	0	16	12	1.16
35314388--35314466	40	2.0	39	95	2	140	18	15	15	50	1.78
35314391--35314457	23	3.2	23	62	24	56	19	14	16	49	1.80
35314976--35315002	14	1.9	14	100	0	54	59	0	0	40	0.98
35314974--35315013	12	3.2	12	86	10	53	62	0	0	37	0.95
35315645--35315669	11	2.3	11	100	0	50	40	0	8	52	1.31
35316589--35316621	16	2.1	16	88	5	50	18	0	6	75	1.00
35319079--35319131	23	2.4	22	75	9	54	9	18	1	69	1.25
35319124--35319163	18	2.2	18	86	0	53	7	25	2	65	1.32
35322596--35322780	40	4.7	40	81	10	193	26	22	25	24	2.00
35322649--35322813	79	2.1	79	82	6	192	28	21	25	24	1.99
35330505--35330689	79	2.3	81	83	7	227	24	22	27	24	2.00
35330506--35330689	40	4.6	40	82	9	207	25	22	27	24	2.00
35330558--35330722	79	2.1	79	83	6	201	26	21	27	24	1.99
35333561--35333592	2	16.0	2	100	0	64	50	0	50	0	1.00
35348862--35348913	27	2.0	26	84	3	68	17	26	21	34	1.95
35355181--35355230	25	2.0	26	96	4	93	28	16	26	30	1.96
35357190--35357226	18	2.0	19	89	5	58	35	16	0	48	1.46
35357435--35357553	41	2.8	41	80	11	116	28	29	19	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35360965--35361005	22	1.9	22	90	5	66	26	12	19	41	1.87
35364785--35364824	21	2.0	20	90	5	62	35	0	22	42	1.54
35364790--35364832	21	2.1	21	83	12	54	32	2	20	44	1.65
35368613--35368643	16	1.9	16	93	0	53	35	22	0	41	1.54
35368610--35368649	20	2.0	20	85	0	53	37	22	0	40	1.54
35368881--35369081	108	1.8	110	85	6	284	22	23	19	34	1.97
35368834--35369089	55	4.8	53	76	10	229	21	23	18	35	1.95
35372832--35372865	15	2.1	15	89	10	50	29	0	2	67	1.05
35374817--35374905	33	2.7	33	75	0	88	16	16	14	51	1.76
35378192--35378247	11	5.2	11	80	4	60	32	19	16	32	1.94
35378192--35378247	21	2.6	21	78	13	60	32	19	16	32	1.94
35379603--35379698	42	2.3	42	98	0	183	18	22	36	21	1.95
35384130--35384158	12	2.4	12	100	0	58	41	0	34	24	1.55
35386760--35386789	16	1.9	16	93	6	53	73	3	13	10	1.21
35397313--35397444	47	2.8	47	86	3	176	34	28	15	21	1.95
35401024--35401206	39	4.6	40	79	10	189	25	22	27	24	2.00
35401070--35401239	79	2.2	78	83	8	202	27	20	27	25	1.99
35409177--35409361	40	4.6	39	80	6	194	24	21	27	25	1.99
35409177--35409361	79	2.3	80	81	7	207	24	21	27	25	1.99
35409178--35409394	79	2.7	78	78	11	192	26	21	27	25	1.99
35422961--35422994	13	2.6	13	90	0	50	29	38	5	26	1.80
35429279--35429461	79	2.3	81	84	7	232	25	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35429258--35429461	40	5.1	40	82	8	238	25	27	22	24	2.00
35430598--35430717	56	2.1	56	98	0	231	22	23	9	45	1.81
35438603--35438680	29	2.7	28	80	11	95	24	14	30	30	1.94
35438633--35439134	174	2.9	174	96	0	923	29	14	25	31	1.94
35447170--35447204	18	1.9	18	94	0	61	14	25	0	60	1.35
35450975--35451160	59	3.1	58	68	19	148	42	2	3	51	1.32
35450968--35451258	120	2.4	122	89	1	460	43	2	4	49	1.34
35451202--35451238	19	2.0	19	85	15	51	45	0	0	54	1.00
35451403--35451493	45	2.0	45	85	2	121	37	28	6	27	1.82
35451474--35451526	16	3.2	16	94	5	97	37	37	0	24	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228