genome.fa.s23.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  113  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32945029--32945327	27	11.1	28	81	5	149	21	17	21	40	1.91
32945047--32945324	80	3.5	80	85	2	360	21	16	21	40	1.91
32945047--32945325	54	5.2	54	85	1	337	21	16	21	40	1.92
32956775--32956810	15	2.4	15	95	0	63	27	19	30	22	1.98
32960878--32960955	27	2.9	27	84	0	102	33	38	12	15	1.85
32962296--32962361	13	5.1	13	79	0	78	31	7	24	36	1.83
32962303--32962361	26	2.3	26	93	0	100	33	6	27	32	1.83
32962530--32962590	30	2.1	29	84	9	79	47	0	3	49	1.18
32969759--32969796	19	2.0	19	100	0	76	52	0	5	42	1.24
32973274--32973359	40	2.2	40	84	0	118	24	29	15	31	1.95
32987901--32988078	27	6.6	27	79	3	178	27	14	26	30	1.95
32989834--32989895	20	3.1	20	88	0	88	9	22	20	46	1.80
33003879--33003911	15	2.3	15	89	5	50	75	3	12	9	1.14
33016497--33016529	13	2.8	12	90	9	50	36	9	15	39	1.79
33017590--33017820	43	5.5	43	76	10	192	24	16	25	34	1.95
33017581--33017820	42	5.7	41	75	10	198	25	15	25	34	1.95
33017590--33017820	85	2.7	83	86	3	300	24	16	25	34	1.95
33030771--33031002	43	5.5	42	79	8	240	23	16	26	33	1.96
33030771--33031011	85	2.8	84	85	4	315	24	17	25	32	1.97
33038995--33039472	231	2.1	231	96	0	884	32	26	8	32	1.86
33046256--33046520	49	5.5	49	90	4	416	32	7	30	29	1.86
33046256--33046520	96	2.8	96	92	2	426	32	7	30	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33046612--33046690	37	2.1	37	88	0	113	24	17	31	26	1.97
33048818--33049138	40	8.1	40	90	0	482	24	22	28	24	2.00
33052447--33052805	96	3.8	94	94	2	583	32	8	30	29	1.86
33052447--33052805	47	7.5	47	93	2	583	32	8	30	29	1.86
33052924--33053002	37	2.1	37	90	0	122	24	18	31	25	1.98
33056950--33057140	30	6.4	30	80	7	165	24	25	13	36	1.92
33056964--33057149	60	3.1	61	79	5	193	24	24	14	36	1.93
33063839--33064065	30	7.6	30	75	6	176	24	25	11	38	1.89
33063839--33064065	60	3.8	60	73	8	203	24	25	11	38	1.89
33064051--33064118	29	2.3	29	80	9	77	22	27	14	35	1.93
33078748--33078796	23	2.1	23	85	11	64	65	6	10	18	1.43
33079961--33080336	50	7.5	49	70	3	248	23	19	21	35	1.96
33079957--33080370	100	4.1	100	89	0	594	24	19	21	34	1.97
33080022--33080367	50	6.9	50	72	1	280	23	20	21	34	1.97
33080526--33081849	132	10.1	132	84	6	1252	26	23	19	29	1.98
33080899--33081104	44	4.7	44	68	13	147	27	23	18	30	1.98
33080585--33081849	131	9.6	128	86	5	1219	26	24	19	29	1.98
33081780--33082068	44	6.6	43	71	11	153	26	24	19	29	1.99
33081652--33082185	175	3.1	176	87	2	763	25	24	20	30	1.98
33081431--33082196	306	2.5	303	75	9	782	25	24	21	29	1.99
33084387--33084498	29	3.9	29	75	17	99	10	6	5	77	1.10
33084414--33084475	19	3.2	20	80	15	76	8	8	1	82	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33084377--33084485	56	1.9	57	85	9	152	8	8	3	79	1.03
33094076--33094169	46	2.0	46	97	0	179	34	22	20	23	1.97
33098807--33098882	39	1.9	39	86	0	107	50	0	3	46	1.20
33100066--33100111	24	1.9	24	82	8	58	10	17	45	26	1.81
33101242--33101284	20	2.2	19	87	4	59	6	11	13	67	1.41
33105948--33105973	5	5.2	5	100	0	52	38	19	19	23	1.93
33106788--33106850	31	2.1	30	84	3	81	39	0	38	22	1.54
33106892--33106924	9	3.7	9	95	0	57	27	12	15	45	1.81
33107344--33107378	17	2.0	18	94	5	63	65	0	0	34	0.93
33107945--33108001	27	2.1	28	86	3	80	64	0	0	35	0.93
33107946--33108000	19	3.1	18	78	14	60	67	0	0	32	0.91
33108481--33108526	18	2.8	17	78	15	53	2	30	39	28	1.69
33110302--33110344	13	3.1	14	84	12	54	60	0	0	39	0.97
33112822--33112921	3	33.0	3	85	2	74	55	2	10	33	1.45
33119877--33119915	21	2.0	18	85	14	51	51	2	0	46	1.14
33121019--33121081	29	2.3	27	84	13	83	61	3	1	33	1.21
33126484--33126514	4	7.8	4	100	0	62	74	0	0	25	0.82
33138269--33138460	50	3.8	50	84	5	253	20	29	22	27	1.99
33140093--33140135	9	4.8	9	100	0	86	65	0	11	23	1.25
33143861--33144075	67	3.2	66	65	15	166	43	6	5	44	1.53
33143801--33144216	138	3.0	135	86	6	577	41	6	5	45	1.54
33150718--33151409	138	5.0	138	89	2	1052	39	8	6	45	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33150718--33151409	274	2.5	276	89	2	1070	39	8	6	45	1.60
33151172--33151403	67	3.4	67	65	22	158	41	7	6	44	1.59
33151538--33151769	40	5.8	40	77	3	218	27	21	24	26	1.99
33151567--33151763	80	2.5	80	85	5	267	28	21	22	26	1.99
33151520--33151751	119	1.9	119	81	2	277	29	20	23	25	1.99
33152631--33152659	4	7.2	4	100	0	58	75	0	0	24	0.80
33153165--33153208	22	2.0	22	91	4	72	31	36	0	31	1.58
33154220--33154261	21	2.0	21	85	4	57	33	11	11	42	1.78
33162515--33162656	43	3.3	41	82	4	149	25	17	22	34	1.96
33164089--33164167	37	2.1	37	88	0	113	25	30	20	24	1.98
33164285--33164601	47	6.7	47	97	1	580	29	29	8	31	1.88
33164369--33164447	25	3.3	25	64	10	74	32	27	5	34	1.79
33168095--33168450	80	4.4	80	84	2	369	25	27	22	25	2.00
33168114--33168450	120	2.8	119	84	2	372	25	27	22	24	2.00
33168095--33168371	40	6.9	40	86	0	347	25	27	22	25	2.00
33168179--33168450	40	6.8	40	85	4	177	24	27	22	25	2.00
33168773--33168845	28	2.6	29	82	12	89	26	31	16	26	1.96
33168829--33168972	43	3.3	43	98	0	279	27	34	15	22	1.94
33170838--33170916	37	2.1	37	85	0	104	26	32	16	24	1.96
33171034--33171305	47	5.7	47	97	1	472	30	30	8	30	1.88
33173837--33173915	37	2.1	37	88	4	115	25	30	18	25	1.98
33174034--33174287	47	5.4	47	91	0	391	28	31	8	31	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33177827--33178009	40	4.6	40	81	6	203	23	26	23	26	2.00
33178327--33178399	29	2.5	29	88	4	103	26	31	16	26	1.96
33178381--33178483	43	2.4	43	100	0	206	26	35	15	22	1.94
33180347--33180425	37	2.1	37	86	4	106	25	29	18	26	1.98
33180544--33181353	47	17.4	47	92	2	1312	29	30	8	31	1.87
33184206--33184251	22	2.1	22	95	0	83	52	13	17	17	1.75
33184380--33184417	19	2.0	19	100	0	76	15	21	21	42	1.89
33197521--33198327	411	2.0	410	94	0	1416	31	17	20	30	1.95
33200845--33200883	7	5.4	7	90	6	60	17	51	0	30	1.46
33200865--33200902	19	2.0	19	85	10	51	21	42	0	36	1.53
33214000--33214097	27	3.5	28	86	5	119	26	13	27	32	1.93
33214028--33214111	27	3.0	27	85	5	87	30	11	23	33	1.91
33218822--33219015	48	4.0	48	82	4	239	26	20	30	22	1.98
33223755--33224057	40	7.6	40	89	2	396	25	20	27	27	1.99
33231655--33231997	40	8.6	40	91	2	485	24	20	27	27	1.99
33244063--33244112	26	2.0	25	84	11	66	14	32	2	52	1.53
33246670--33246772	51	2.0	51	100	0	206	24	21	15	38	1.92
33252331--33252375	24	1.9	23	86	4	63	17	44	2	35	1.62
33268544--33268622	37	2.1	37	88	0	113	26	31	17	24	1.97
33268740--33269032	47	6.2	47	90	3	453	29	30	7	31	1.86
33268740--33269032	95	3.1	94	90	3	453	29	30	7	31	1.86
33268740--33269032	142	2.1	141	92	2	480	29	30	7	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33272387--33272598	40	5.3	41	78	10	149	25	28	19	26	1.99
33272890--33272963	29	2.6	29	89	4	105	25	32	16	25	1.96
33272945--33273047	43	2.4	43	95	0	179	24	34	17	23	1.96
33274912--33274990	37	2.1	37	90	0	122	25	31	18	24	1.98
33275110--33275408	47	6.1	47	86	7	400	29	30	8	31	1.86
33304022--33304083	30	2.1	30	87	6	90	48	11	8	32	1.68
33310485--33310530	21	2.3	20	78	14	51	45	17	6	30	1.73
33316641--33316996	103	3.5	103	92	0	579	33	28	18	18	1.95
33318244--33318296	7	7.4	7	97	2	97	13	13	0	73	1.10
33318249--33318356	14	7.3	14	78	10	56	18	8	3	69	1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228