genome.fa.s23.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  148  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44509315--44509466	22	6.8	22	71	7	83	33	11	21	32	1.90
44510029--44510066	17	2.2	17	90	0	58	23	2	21	52	1.59
44510083--44510120	17	2.2	17	86	9	51	23	10	21	44	1.83
44510126--44510177	18	2.9	18	73	0	50	25	7	17	50	1.72
44512138--44512323	51	3.7	50	80	6	196	31	27	17	24	1.97
44512138--44512321	101	1.8	101	85	3	262	31	26	17	24	1.97
44515447--44515592	49	3.0	48	87	5	220	31	28	13	26	1.94
44516645--44516726	40	2.0	40	97	0	155	37	18	7	36	1.79
44518153--44518339	51	3.7	50	75	5	169	29	25	19	25	1.98
44518143--44518370	102	2.2	102	79	3	235	29	27	17	25	1.98
44520627--44520651	13	1.9	13	100	0	50	48	8	0	44	1.32
44522982--44523009	7	4.0	7	100	0	56	42	42	0	14	1.45
44523351--44523381	4	7.8	4	100	0	62	22	0	0	77	0.77
44523620--44523663	22	2.0	22	95	0	79	36	25	4	34	1.76
44524898--44524940	20	2.2	20	100	0	86	23	20	9	46	1.79
44526995--44527129	42	3.2	40	76	13	130	32	3	13	50	1.59
44531852--44531908	18	3.0	18	82	12	69	64	1	0	33	1.04
44531868--44531908	14	2.9	14	88	3	55	68	0	0	31	0.90
44534967--44535050	28	2.9	29	68	16	75	39	7	2	51	1.42
44535046--44535664	158	3.9	159	77	11	622	31	10	6	51	1.63
44535048--44535690	318	2.0	316	92	1	1063	31	10	6	51	1.61
44536044--44536158	10	11.9	10	69	19	66	0	31	0	67	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44536044--44536105	21	3.0	21	83	4	81	0	29	0	70	0.87
44536023--44536135	35	3.3	34	84	10	133	0	31	0	68	0.90
44536024--44536159	38	3.8	36	82	14	140	0	32	0	66	0.97
44536020--44536142	34	3.7	33	75	15	110	0	31	0	67	0.96
44542759--44542946	43	4.4	43	88	0	279	25	31	17	25	1.97
44545419--44545683	56	4.8	56	80	10	301	35	2	17	45	1.61
44545540--44545894	9	39.2	9	67	16	94	32	0	19	47	1.54
44545419--44545683	110	2.4	112	89	3	394	35	2	17	45	1.61
44545617--44545759	76	1.9	75	89	2	225	30	0	20	48	1.54
44545589--44545891	132	2.3	130	88	6	427	32	0	19	47	1.54
44546623--44546647	13	1.9	13	100	0	50	52	24	8	16	1.70
44547990--44548029	19	2.0	20	85	4	55	27	2	45	25	1.66
44548426--44548467	18	2.2	20	83	8	52	42	0	4	52	1.22
44549413--44549456	21	2.1	21	86	0	61	31	38	0	29	1.58
44549426--44549456	14	2.2	14	94	0	53	32	41	0	25	1.56
44549475--44549509	15	2.4	14	86	9	52	40	37	0	22	1.55
44549892--44550131	41	5.9	41	78	0	255	27	29	19	23	1.98
44549900--44550129	123	1.9	123	82	1	291	28	29	17	24	1.97
44550210--44550285	40	1.9	40	88	0	116	21	18	23	36	1.95
44554800--44554845	20	2.3	22	75	21	55	47	2	0	50	1.13
44554807--44554844	10	3.9	10	82	3	51	55	2	0	42	1.14
44555146--44555186	19	2.2	19	90	0	64	53	17	0	29	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44560500--44560570	20	3.6	19	76	16	72	18	29	21	30	1.97
44560493--44560590	40	2.5	40	89	0	142	19	28	19	32	1.96
44560521--44560636	20	5.8	20	73	11	58	18	28	19	33	1.95
44560599--44560649	20	2.5	20	81	6	50	11	31	21	35	1.90
44566658--44566829	40	4.3	40	76	2	157	18	29	20	31	1.96
44566675--44566801	20	6.3	20	70	7	87	20	30	19	29	1.97
44569002--44569439	220	2.0	221	94	0	770	37	14	10	37	1.80
44569512--44569758	9	26.1	9	69	16	117	62	3	3	30	1.28
44569585--44569666	29	2.9	28	85	7	103	67	3	1	28	1.15
44569550--44569640	38	2.4	38	85	5	114	63	4	3	28	1.29
44569583--44569666	38	2.2	38	82	4	98	65	3	1	29	1.17
44569616--44569757	29	4.9	29	75	14	107	62	2	2	32	1.21
44570306--44570344	21	1.9	21	89	5	62	41	0	5	53	1.23
44570332--44570619	9	30.9	9	67	20	96	38	1	2	57	1.21
44570323--44570590	19	14.1	20	67	17	83	39	1	2	57	1.19
44570350--44570588	20	12.6	19	68	21	85	38	0	2	58	1.15
44570572--44570619	15	3.0	15	82	11	60	39	4	0	56	1.19
44574295--44574342	23	2.1	23	84	7	62	56	10	8	25	1.61
44575054--44575126	32	2.3	32	82	0	92	31	34	19	15	1.92
44583534--44583590	28	2.0	28	83	6	71	54	7	1	36	1.38
44585037--44585077	17	2.5	17	80	11	50	41	0	2	56	1.13
44585122--44585152	16	2.0	16	93	6	55	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44585147--44585204	14	3.9	14	77	16	55	60	1	1	36	1.17
44585258--44585283	6	4.3	6	100	0	52	61	0	0	38	0.96
44588039--44588064	5	5.2	5	100	0	52	38	19	19	23	1.93
44588593--44588622	15	1.9	16	93	6	53	43	0	33	23	1.54
44588570--44588658	31	2.7	33	81	11	103	44	0	31	23	1.54
44588707--44588768	30	2.1	29	81	6	70	41	0	35	22	1.54
44588987--44589018	9	3.6	9	91	0	55	31	9	15	43	1.78
44610166--44610198	17	2.0	16	94	5	57	15	48	0	36	1.45
44623995--44624046	28	1.9	28	84	7	72	48	0	7	44	1.31
44624120--44624145	3	8.7	3	100	0	52	69	0	0	30	0.89
44629764--44629827	13	4.9	13	76	0	74	31	7	23	37	1.83
44631094--44631132	19	2.1	19	95	0	69	53	17	25	2	1.56
44631515--44631557	19	2.3	18	84	11	52	62	6	9	20	1.48
44637641--44637683	22	1.9	23	86	13	63	53	2	2	41	1.26
44639428--44639519	24	3.8	24	84	4	80	47	1	33	17	1.55
44639462--44639521	24	2.5	24	89	5	86	46	0	36	16	1.47
44639632--44639796	89	1.9	89	87	2	242	40	22	10	26	1.87
44639587--44639804	89	2.4	84	78	11	238	37	21	9	31	1.86
44639807--44639890	39	2.1	40	80	6	91	63	2	7	27	1.33
44639838--44639918	10	8.3	10	71	14	53	65	1	3	29	1.17
44639842--44639927	21	4.3	21	71	16	65	61	1	3	33	1.20
44639839--44639965	59	2.2	57	81	8	139	60	1	7	30	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44640298--44640489	88	2.1	91	83	5	248	33	8	19	37	1.83
44654678--44654716	14	2.9	14	85	11	55	35	15	0	48	1.45
44657940--44657976	14	2.8	14	88	8	51	0	43	0	56	0.99
44659670--44659727	28	2.1	28	83	0	71	46	15	24	13	1.82
44662987--44663295	138	2.2	137	87	2	433	21	17	27	33	1.96
44663053--44663397	138	2.5	137	83	3	406	22	18	26	32	1.97
44665505--44665547	22	2.0	22	100	0	86	39	4	13	41	1.66
44666301--44666332	11	2.8	12	86	13	50	9	15	15	59	1.60
44669331--44669360	14	2.1	14	100	0	60	20	26	30	23	1.98
44696200--44696230	12	2.6	12	94	0	53	16	19	6	58	1.59
44704367--44704613	50	4.8	50	79	7	185	29	19	27	23	1.98
44712010--44712125	50	2.3	50	81	0	142	29	23	27	19	1.98
44716608--44716785	27	6.6	27	83	3	205	26	15	28	29	1.96
44716609--44716764	82	1.9	81	88	3	233	26	15	28	29	1.96
44716605--44716785	82	2.2	81	83	2	229	27	15	27	29	1.96
44718150--44718182	15	2.2	15	89	10	50	15	3	9	72	1.21
44723342--44723569	42	5.4	42	80	5	219	30	30	16	23	1.96
44723340--44723566	85	2.7	84	80	6	235	30	29	15	23	1.96
44723340--44723596	42	6.0	43	80	5	184	31	29	15	22	1.95
44723420--44723596	85	2.1	86	79	4	196	32	31	14	22	1.94
44728468--44728495	7	4.0	7	100	0	56	57	0	42	0	0.99
44732862--44732927	9	7.6	9	75	10	57	34	0	16	48	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44732980--44733005	13	2.0	13	100	0	52	38	7	0	53	1.30
44734462--44734506	23	2.0	23	86	0	63	42	6	22	28	1.79
44749605--44749781	27	6.5	27	84	3	203	29	28	15	26	1.96
44749626--44749783	82	1.9	81	88	3	237	29	28	15	26	1.96
44753988--44754066	25	3.3	25	61	10	65	32	5	29	32	1.79
44753979--44754449	47	9.9	47	96	1	879	32	7	29	30	1.86
44753979--44754449	96	5.0	94	97	1	879	32	7	29	30	1.86
44754568--44754644	37	2.1	37	87	0	109	24	18	31	25	1.97
44763462--44763500	19	2.1	19	90	0	60	28	20	30	20	1.98
44766853--44766903	24	2.2	22	82	6	57	43	0	0	56	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228