genome.fa.s23.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  150  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45137534--45137560	13	2.1	13	100	0	54	14	0	7	77	0.97
45139285--45139381	30	3.2	30	77	2	115	29	15	25	28	1.96
45141816--45141870	20	2.8	20	88	0	83	29	16	29	25	1.97
45145633--45145665	11	3.0	11	100	0	66	72	9	0	18	1.10
45154279--45154316	20	1.9	20	89	10	60	34	31	13	21	1.91
45157599--45157652	20	2.7	20	82	0	63	24	20	18	37	1.94
45157599--45157672	30	2.5	30	86	8	98	21	20	18	39	1.93
45157599--45157663	20	3.2	20	71	16	53	23	21	16	38	1.93
45159547--45159576	7	4.3	7	100	0	60	16	13	16	53	1.73
45160245--45160289	17	2.6	17	100	0	90	64	0	8	26	1.23
45160279--45160313	15	2.3	15	90	0	52	82	2	5	8	0.91
45160291--45160360	32	2.2	31	85	10	88	77	4	14	4	1.08
45161303--45161344	18	2.3	18	87	0	57	71	4	16	7	1.26
45163896--45163925	7	4.3	7	95	0	51	16	10	16	56	1.66
45166370--45166407	20	2.0	20	89	5	60	28	26	10	34	1.90
45166564--45166643	32	2.5	32	75	0	88	21	11	20	47	1.80
45171817--45171879	25	2.5	26	79	7	76	34	6	34	23	1.81
45176053--45176088	12	3.0	12	100	0	72	16	8	0	75	1.04
45183244--45183295	22	2.4	22	83	0	68	19	26	19	34	1.95
45183258--45183293	11	3.3	11	92	0	54	16	25	19	38	1.92
45183940--45183978	20	2.0	20	94	0	69	28	30	17	23	1.97
45194496--45194557	10	5.9	10	76	10	52	33	30	3	32	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45194496--45194558	21	3.0	21	88	2	90	33	31	3	31	1.74
45199401--45199453	21	2.5	21	87	3	70	33	32	3	30	1.76
45206965--45207012	20	2.4	20	67	0	51	33	18	27	20	1.96
45208654--45208685	12	2.7	12	95	0	55	18	21	0	59	1.38
45208690--45208800	6	18.3	6	68	10	66	6	17	3	72	1.19
45208690--45208733	14	3.4	12	80	17	52	6	18	0	75	1.02
45208667--45208734	33	2.1	32	86	8	93	8	19	1	70	1.21
45208691--45208796	18	5.8	18	72	6	79	6	16	3	72	1.21
45208697--45208899	74	2.9	68	67	14	160	9	20	4	65	1.39
45209017--45209066	13	3.6	13	77	15	55	16	6	4	74	1.17
45210569--45210616	20	2.4	20	67	0	51	33	18	27	20	1.96
45215960--45215999	18	2.2	18	86	4	53	42	5	7	45	1.54
45216480--45216536	20	2.8	20	92	5	89	28	28	19	24	1.98
45216489--45216547	20	3.0	20	87	5	84	28	27	16	27	1.97
45218033--45218062	7	4.3	7	100	0	60	53	16	13	16	1.73
45233938--45233986	13	3.6	13	88	5	71	73	0	10	16	1.09
45233954--45233999	12	4.0	12	78	21	62	76	0	8	15	1.02
45235040--45235081	18	2.3	18	87	0	57	71	4	16	7	1.26
45238599--45238649	15	3.5	15	81	5	59	5	19	1	72	1.15
45246827--45246893	31	2.1	31	81	13	75	26	14	25	32	1.95
45247682--45247746	22	2.9	22	90	2	94	33	33	4	27	1.78
45255224--45255266	18	2.4	18	77	14	52	46	6	9	37	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45255710--45255887	28	6.4	28	88	2	225	25	13	29	32	1.94
45256204--45256269	27	2.4	27	85	5	89	28	12	21	37	1.89
45255836--45256551	369	1.9	369	98	0	1387	31	12	23	32	1.92
45264617--45264768	27	5.6	27	93	3	241	26	13	28	30	1.94
45264617--45264768	55	2.8	55	93	0	250	26	13	28	30	1.94
45272529--45272704	55	3.2	54	84	6	212	25	13	29	31	1.94
45272554--45272704	27	5.6	27	92	4	232	26	13	29	30	1.94
45280437--45280591	27	5.6	27	86	10	188	25	14	29	30	1.95
45293157--45293231	26	2.8	26	76	15	73	69	5	16	9	1.33
45296015--45296061	20	2.3	20	81	0	58	29	34	12	23	1.92
45297584--45297620	18	2.1	18	89	0	56	67	0	21	10	1.21
45302000--45302037	18	2.0	19	85	10	51	21	2	2	73	1.07
45306437--45306588	27	5.6	27	92	3	232	27	13	28	30	1.94
45306437--45306588	55	2.8	55	92	0	241	27	13	28	30	1.94
45312068--45312186	59	2.0	60	98	1	231	26	23	21	27	1.99
45314493--45314644	27	5.6	27	92	3	232	27	13	28	30	1.94
45314493--45314644	55	2.8	55	92	0	241	27	13	28	30	1.94
45318283--45318327	19	2.2	20	84	7	56	26	33	8	31	1.87
45318998--45319063	21	3.0	22	86	4	80	30	4	30	34	1.78
45325028--45325072	19	2.3	20	84	7	65	6	11	2	80	0.99
45327283--45327318	12	2.8	13	87	8	56	19	5	0	75	1.00
45327623--45327688	21	3.0	22	86	4	80	30	4	30	34	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45334178--45334240	33	1.9	33	84	12	85	12	25	6	55	1.60
45334238--45334293	21	2.7	21	72	5	51	8	17	1	71	1.21
45334237--45334293	14	4.1	14	75	16	57	8	17	1	71	1.19
45334255--45334358	18	5.6	18	73	10	84	6	18	3	71	1.24
45334255--45334362	6	17.7	6	70	5	74	6	18	3	71	1.23
45335396--45335461	32	2.1	30	83	13	80	4	15	4	75	1.12
45335442--45335501	12	4.5	13	76	17	61	16	8	3	71	1.24
45335428--45335511	12	6.7	12	69	25	50	14	8	5	71	1.29
45337655--45337738	11	6.7	12	71	21	57	72	5	8	13	1.26
45337655--45337739	40	2.2	39	85	8	111	72	5	8	12	1.25
45337705--45337776	29	2.6	27	80	4	81	69	6	13	9	1.36
45338689--45338720	15	2.1	16	94	5	57	71	0	21	6	1.07
45338803--45338836	18	1.9	18	88	5	52	52	2	35	8	1.47
45345998--45346072	33	2.2	34	92	2	125	42	13	6	37	1.70
45347780--45347818	18	2.2	18	86	9	53	7	17	2	71	1.21
45353823--45353849	14	1.9	14	100	0	54	33	22	14	29	1.94
45358533--45358589	10	5.9	9	75	15	51	28	17	31	22	1.97
45358533--45358589	20	2.9	20	86	2	89	28	17	31	22	1.97
45361660--45361769	23	4.8	23	94	0	184	36	5	26	31	1.79
45370221--45370276	14	3.6	16	85	11	80	21	12	5	60	1.51
45370314--45370346	12	2.8	12	100	0	66	18	0	6	75	1.00
45371890--45372033	50	2.8	50	82	6	171	22	29	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45374542--45374693	27	5.6	27	93	3	241	30	28	13	26	1.94
45374542--45374718	55	3.2	55	90	0	255	31	29	13	25	1.94
45388298--45388497	40	5.0	40	90	3	289	22	24	28	25	1.99
45392675--45392938	40	6.7	40	87	4	311	24	20	28	26	1.99
45392727--45392971	80	3.1	80	85	2	253	25	20	28	25	1.99
45400589--45400851	40	6.6	40	88	3	325	24	20	27	26	1.99
45400628--45400886	80	3.3	80	85	3	256	25	20	27	25	1.99
45408562--45408771	40	5.3	40	92	0	314	23	20	29	26	1.99
45410548--45410581	15	2.3	15	89	0	50	35	29	32	2	1.73
45413562--45413593	13	2.6	13	90	9	50	81	6	3	9	0.97
45413562--45413594	12	2.6	13	85	4	50	81	6	3	9	0.95
45413572--45413614	20	2.2	20	83	4	52	74	4	6	13	1.19
45413572--45413625	18	3.4	14	77	22	54	74	5	5	14	1.19
45413559--45413660	45	2.2	46	80	13	113	75	6	6	10	1.18
45414688--45414721	18	1.9	18	88	5	52	52	2	35	8	1.47
45420949--45420994	13	3.5	13	93	3	74	78	4	6	10	1.08
45420949--45420994	14	3.4	14	90	3	67	78	4	6	10	1.08
45422046--45422087	18	2.3	18	87	0	57	71	4	16	7	1.26
45429580--45429642	33	1.9	33	84	12	85	12	26	6	53	1.62
45429645--45429696	14	3.8	13	77	10	50	5	17	1	75	1.10
45429639--45429695	21	2.7	21	75	0	60	8	15	1	73	1.16
45429639--45429696	27	2.1	27	87	6	82	8	17	1	72	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45429659--45429796	12	11.5	12	72	16	81	7	18	2	70	1.25
45429657--45429795	18	7.7	18	71	8	95	7	19	2	69	1.26
45429657--45429764	6	17.7	6	69	7	74	6	17	3	72	1.21
45430781--45430818	10	3.8	10	83	13	51	2	10	2	84	0.83
45436000--45436058	23	2.5	23	78	8	66	25	5	33	35	1.78
45442367--45442411	20	2.2	20	84	7	56	24	24	24	26	2.00
45442540--45442603	28	2.3	27	76	12	67	31	4	9	54	1.53
45446361--45446397	10	3.7	10	86	13	58	75	8	2	13	1.13
45447466--45447552	36	2.4	36	96	0	156	54	2	29	13	1.52
45447564--45447621	18	3.2	18	85	0	80	67	5	18	8	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228