genome.fa.s23.2.7.7.80.10.50.1000.183.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  183  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54518718--54518758	14	2.9	14	85	0	55	31	41	0	26	1.56
54519359--54519913	114	4.9	114	89	0	835	27	25	22	24	2.00
54520807--54520866	22	2.8	21	75	12	59	38	3	8	50	1.49
54521020--54521080	31	2.0	30	84	12	79	24	18	16	40	1.90
54521175--54521212	17	2.2	17	100	0	76	31	5	5	57	1.43
54521258--54521321	22	3.0	22	79	2	58	70	1	18	9	1.22
54526337--54526575	42	5.7	42	85	4	259	46	15	21	17	1.84
54526382--54526575	84	2.3	84	94	0	334	46	14	21	17	1.84
54526318--54526574	21	12.3	21	69	10	143	45	15	21	17	1.85
54528587--54528631	21	2.1	21	88	8	65	31	26	17	24	1.97
54528596--54528642	21	2.2	21	84	0	58	27	31	12	27	1.93
54528731--54528898	71	2.4	71	86	4	223	32	26	13	27	1.93
54531304--54531358	27	2.0	27	92	0	92	38	29	10	21	1.88
54533801--54533872	6	11.5	6	76	16	58	79	5	4	11	1.04
54535533--54535589	21	2.7	20	77	20	62	71	0	3	24	1.01
54535533--54535568	17	2.1	18	89	5	56	72	0	2	25	0.98
54535539--54535596	29	2.0	30	86	10	84	72	0	3	24	1.00
54547651--54547692	20	2.0	21	95	4	77	50	4	14	30	1.63
54554826--54554912	37	2.4	37	92	1	149	40	27	13	18	1.88
54558444--54558545	47	2.2	46	80	5	116	25	20	18	35	1.95
54562938--54563119	91	2.0	91	100	0	364	41	10	19	27	1.85
54563791--54563870	25	3.3	26	76	16	100	8	16	27	47	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54563816--54563884	22	3.0	22	74	12	66	14	17	26	42	1.87
54563791--54563941	47	3.2	46	82	3	185	11	12	28	47	1.77
54563791--54563881	25	3.8	25	75	11	91	10	16	27	45	1.81
54566794--54566848	24	2.3	24	80	0	74	18	12	7	61	1.53
54566865--54566899	19	1.9	17	88	11	52	25	2	5	65	1.28
54566865--54566905	18	2.2	19	83	12	50	26	4	4	63	1.35
54578214--54578302	25	3.6	25	68	17	67	31	30	15	22	1.95
54582761--54583132	27	13.8	27	80	6	333	18	15	22	43	1.88
54582761--54583133	54	6.9	54	81	4	378	18	15	21	43	1.88
54582772--54583135	81	4.5	79	81	4	406	18	15	21	44	1.87
54586895--54586949	16	3.5	16	72	18	53	36	0	1	61	1.06
54586894--54587004	30	3.7	29	77	12	116	38	0	5	54	1.29
54597170--54597194	13	1.9	13	100	0	50	32	16	20	32	1.94
54603591--54603624	9	3.8	9	88	0	50	29	8	14	47	1.75
54614769--54614823	22	2.5	22	77	13	60	63	1	1	32	1.15
54616491--54616630	70	2.0	70	92	2	237	27	10	19	43	1.82
54617059--54617084	12	2.2	12	100	0	52	69	0	7	23	1.14
54626537--54626603	7	9.7	7	77	18	61	23	1	0	74	0.90
54626543--54626594	18	3.0	17	81	10	61	21	1	0	76	0.87
54626543--54626608	8	7.4	8	76	20	51	21	1	0	77	0.85
54626560--54626600	15	2.7	16	88	7	59	21	2	0	75	0.92
54626535--54626605	17	4.1	17	79	20	76	23	1	0	74	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54628796--54628847	22	2.4	22	87	3	70	40	0	30	28	1.57
54628955--54628984	15	2.0	15	100	0	60	6	6	20	66	1.38
54639989--54640221	54	4.1	54	74	14	234	42	1	7	47	1.42
54640004--54640089	28	3.1	27	65	24	63	46	2	8	43	1.46
54640091--54640142	15	3.6	15	80	12	56	44	0	1	53	1.11
54640220--54640264	15	2.8	16	83	10	56	48	0	0	51	1.00
54640221--54640261	16	2.6	16	88	7	57	46	0	0	53	1.00
54640372--54640481	45	2.6	43	81	11	129	33	29	4	32	1.78
54640462--54640512	16	3.2	16	94	0	84	33	39	0	27	1.57
54645223--54645253	6	5.2	6	100	0	62	67	0	0	32	0.91
54647419--54647779	185	2.0	183	88	3	546	43	16	8	31	1.78
54647419--54647778	92	3.9	92	86	3	492	43	16	8	31	1.79
54647419--54647778	31	11.7	31	87	2	469	43	16	8	31	1.79
54653848--54654188	31	11.1	31	81	3	332	43	16	9	30	1.79
54653848--54654177	93	3.6	93	85	3	393	43	16	9	30	1.80
54662974--54663038	19	3.5	19	83	12	64	69	3	1	26	1.12
54664137--54664183	23	2.0	23	83	0	58	68	2	2	27	1.13
54667305--54667348	21	2.1	21	100	0	88	29	6	13	50	1.68
54674160--54674214	23	2.4	23	84	0	65	34	16	1	47	1.57
54675325--54675365	11	3.9	11	75	12	50	0	14	4	80	0.87
54675325--54675372	20	2.4	21	79	10	55	0	16	4	79	0.89
54683107--54683179	36	2.0	36	100	0	146	19	15	8	57	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54687944--54688132	51	3.7	50	84	5	238	29	24	15	30	1.96
54696427--54696549	41	3.0	41	82	0	156	31	26	22	18	1.97
54702332--54702389	24	2.3	27	80	14	70	70	1	22	5	1.16
54711349--54711379	12	2.6	12	94	0	53	19	25	25	29	1.99
54714051--54714138	41	2.1	41	80	0	95	38	28	17	15	1.90
54714061--54714139	41	1.9	41	84	0	104	36	30	17	15	1.91
54716715--54716743	8	3.6	8	100	0	58	34	37	0	27	1.57
54717574--54717646	26	2.9	26	80	9	71	4	27	1	67	1.17
54727135--54727178	18	2.4	18	84	0	61	43	11	11	34	1.77
54727285--54727433	74	2.0	74	98	0	289	28	22	20	29	1.98
54728615--54728647	9	3.7	9	88	12	50	75	0	9	15	1.03
54736412--54736462	21	2.4	22	80	9	61	27	27	29	15	1.96
54739940--54739971	15	2.1	15	100	0	64	18	28	6	46	1.73
54745396--54745429	17	2.0	17	100	0	68	76	0	0	23	0.79
54745425--54745451	6	4.5	6	100	0	54	51	0	0	48	1.00
54746460--54746494	15	2.2	16	90	5	54	51	0	5	42	1.25
54746469--54746522	19	2.7	19	85	8	63	46	1	9	42	1.46
54747610--54747816	30	6.9	30	82	2	220	32	10	19	37	1.85
54747610--54747813	89	2.3	89	85	2	257	31	9	20	38	1.85
54760621--54760677	29	2.0	29	89	6	89	15	15	22	45	1.84
54763179--54763221	18	2.4	18	80	7	52	37	2	0	60	1.10
54763765--54763830	23	3.0	23	86	4	82	46	4	1	46	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54763868--54763960	17	5.6	16	71	25	61	53	3	3	39	1.33
54776369--54776450	43	1.9	43	94	0	146	39	12	12	36	1.80
54776364--54776457	43	2.2	41	85	7	134	43	10	12	32	1.77
54777562--54778065	148	3.4	149	94	2	874	31	15	16	36	1.90
54778521--54778569	14	3.5	13	78	15	53	34	42	0	22	1.54
54778835--54778889	15	3.7	15	76	11	60	34	47	0	18	1.49
54778835--54778868	8	4.6	7	86	13	50	32	50	0	17	1.47
54778884--54778912	14	2.1	14	100	0	58	34	37	0	27	1.57
54779178--54779352	73	2.4	74	89	0	271	24	26	22	26	2.00
54779084--54779466	188	2.1	185	88	1	577	25	26	20	27	1.99
54779252--54779580	114	2.9	114	89	0	480	25	27	20	26	1.99
54779483--54779653	73	2.3	73	84	5	229	26	26	17	29	1.98
54779974--54780009	18	2.0	18	100	0	72	44	5	16	33	1.71
54780060--54780095	18	2.0	18	88	0	54	22	2	0	75	0.94
54784088--54784179	22	4.2	22	87	5	141	30	30	0	39	1.57
54784151--54784209	30	2.0	30	93	0	100	30	35	0	33	1.58
54784129--54784231	52	2.0	51	85	9	138	32	33	0	33	1.58
54784181--54784222	22	1.9	22	90	0	66	33	33	0	33	1.58
54784265--54784321	28	2.0	30	89	6	91	35	0	1	63	1.05
54784267--54784328	28	2.1	30	85	5	83	35	0	1	62	1.05
54784266--54784328	29	2.1	30	85	8	85	34	0	1	63	1.04
54786576--54787217	149	4.3	149	94	2	1051	48	23	0	28	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54786586--54787167	23	23.9	23	81	13	630	48	22	0	28	1.53
54786586--54787242	172	3.8	167	84	12	758	47	23	0	28	1.54
54786576--54787292	23	28.2	29	73	22	404	47	23	0	28	1.55
54790569--54790811	124	2.0	123	84	2	317	30	23	14	31	1.94
54790570--54790846	124	2.2	123	80	5	308	31	22	14	31	1.94
54792290--54792322	17	1.9	17	93	0	57	45	9	6	39	1.61
54799831--54799882	16	3.2	16	94	0	86	28	0	36	34	1.58
54799863--54799957	45	2.1	44	88	1	136	32	6	27	33	1.82
54800117--54800151	18	2.0	17	88	5	52	54	0	0	45	0.99
54805455--54805499	22	2.0	23	82	4	56	48	4	0	46	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228