genome.fa.s23.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  102  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29606107--29606149	21	2.0	21	82	8	52	20	18	18	41	1.90
29606530--29606560	4	8.0	4	92	7	55	0	0	22	77	0.77
29611707--29611783	32	2.4	32	82	0	100	14	9	49	27	1.73
29614359--29614529	32	5.4	32	73	10	127	40	16	18	23	1.90
29614565--29614619	27	2.0	28	82	10	69	32	21	21	23	1.98
29614701--29614782	24	3.4	24	84	0	101	50	21	6	21	1.71
29614701--29614809	24	4.5	24	83	2	94	47	22	6	23	1.74
29614855--29615118	27	9.9	27	78	8	200	20	16	18	43	1.88
29614936--29615130	27	7.2	27	82	6	216	21	17	16	44	1.87
29617214--29617244	15	2.0	16	93	6	55	35	12	6	45	1.68
29620087--29620118	13	2.5	13	94	0	55	25	25	37	12	1.91
29622254--29622284	16	1.9	16	100	0	62	9	12	0	77	0.99
29628782--29628809	14	2.0	14	100	0	56	35	7	0	57	1.26
29634612--29634689	3	27.3	3	74	10	65	29	2	3	64	1.25
29634713--29634790	27	2.8	28	77	14	99	30	8	7	52	1.61
29634705--29634795	27	3.4	26	73	19	96	29	8	7	53	1.59
29642266--29642314	18	2.7	18	80	0	62	38	16	2	42	1.60
29651791--29652049	85	3.0	84	84	2	286	31	13	15	40	1.85
29652045--29652279	78	3.0	77	79	6	269	31	16	11	41	1.83
29652287--29652592	84	3.7	84	82	7	324	32	10	10	45	1.74
29664892--29665527	328	1.9	327	87	6	930	47	8	8	35	1.65
29670683--29670743	24	2.5	24	79	12	72	63	6	11	18	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29672598--29673090	132	3.7	132	90	0	754	27	22	17	31	1.97
29672762--29673137	44	8.5	44	67	16	179	27	22	17	31	1.97
29673179--29673357	51	3.5	51	69	7	166	29	25	17	28	1.97
29673232--29673407	50	3.5	50	68	7	149	25	23	21	30	1.99
29673230--29674397	99	11.8	99	88	1	1493	23	21	23	32	1.98
29673398--29674431	50	20.9	49	67	9	218	22	21	23	32	1.98
29674427--29675009	88	6.6	88	92	1	888	24	22	24	28	1.99
29674439--29675009	263	2.2	264	89	3	884	24	22	24	27	2.00
29676086--29676205	42	2.8	42	85	1	150	26	28	15	29	1.96
29676281--29676317	15	2.6	14	91	4	56	13	13	0	72	1.11
29680590--29680637	23	2.0	24	88	4	71	62	8	10	18	1.52
29680767--29680796	10	3.0	10	100	0	60	40	0	20	40	1.52
29685154--29685232	21	3.7	22	80	12	78	36	8	16	37	1.80
29685154--29685209	19	2.8	19	94	5	94	37	10	16	35	1.83
29685155--29685232	19	3.6	24	80	16	75	37	8	15	38	1.79
29685768--29685857	40	2.2	39	77	13	92	34	8	0	56	1.30
29685919--29685962	23	2.0	22	90	4	70	34	6	2	56	1.38
29700491--29700559	30	2.3	30	97	0	129	42	4	21	31	1.73
29700599--29700660	26	2.4	26	94	0	106	41	8	0	50	1.32
29701079--29701126	18	2.6	18	76	3	51	37	10	0	52	1.36
29701207--29701265	19	3.2	19	80	4	84	38	11	0	49	1.40
29701270--29701331	18	3.4	18	82	4	88	48	0	12	38	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29701270--29701347	37	2.1	37	100	0	156	48	0	12	38	1.42
29701270--29701339	18	3.8	18	81	3	86	50	0	12	37	1.41
29701286--29701347	19	3.3	19	81	4	90	48	0	11	40	1.39
29701896--29701959	27	2.4	27	91	0	110	51	0	6	42	1.27
29702547--29702585	17	2.2	18	86	4	53	23	0	5	71	1.05
29702553--29702588	17	2.1	17	94	0	63	27	0	0	72	0.85
29708818--29708882	34	1.9	34	96	0	121	26	30	3	40	1.71
29709600--29709657	18	3.2	17	80	4	62	10	36	6	46	1.65
29712493--29712592	31	3.2	31	71	5	101	48	11	16	25	1.78
29712523--29712626	33	3.2	33	65	13	90	44	10	18	26	1.82
29719544--29719577	15	2.3	15	89	0	50	58	17	0	23	1.38
29719550--29719605	24	2.3	24	90	0	85	62	16	0	21	1.32
29750385--29750418	15	2.3	15	94	0	59	32	11	0	55	1.36
29751171--29751336	82	2.0	82	83	4	208	34	4	18	42	1.69
29753142--29753190	25	2.0	24	84	4	62	53	0	0	46	1.00
29757572--29757609	19	2.0	19	85	10	51	15	15	44	23	1.85
29757832--29757885	26	2.1	26	92	0	90	24	20	25	29	1.99
29759557--29759870	27	11.7	27	87	2	420	32	19	22	24	1.97
29759892--29759973	24	3.5	24	81	5	87	21	7	23	47	1.75
29760047--29760107	27	2.3	26	83	11	70	19	24	22	32	1.97
29760089--29760149	26	2.3	26	88	0	86	19	16	22	40	1.90
29760148--29760385	32	7.4	32	76	11	155	18	20	22	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29760148--29760386	64	3.7	63	81	7	241	17	20	23	38	1.93
29763841--29763974	49	2.7	49	81	1	178	23	14	26	34	1.94
29768104--29768166	27	2.3	27	83	5	74	41	20	19	19	1.91
29771842--29772132	50	5.8	49	82	6	228	23	29	20	26	1.99
29771842--29772137	49	5.8	50	82	4	283	22	29	20	27	1.99
29771891--29772137	99	2.4	102	84	5	302	22	30	20	26	1.98
29773125--29773197	19	3.8	19	92	0	128	38	9	15	36	1.80
29773405--29773449	23	2.0	23	81	0	54	22	0	15	62	1.33
29775174--29775505	44	7.6	44	72	11	175	28	22	23	25	1.99
29775392--29775515	45	2.8	44	76	11	117	29	24	21	25	1.99
29776068--29776159	19	4.8	19	91	0	157	36	9	16	36	1.82
29776068--29776182	38	2.9	38	90	5	176	36	8	16	38	1.80
29776068--29776182	19	5.7	22	83	8	92	36	8	16	38	1.80
29776367--29776411	23	2.0	23	81	0	54	22	0	15	62	1.33
29776624--29776650	3	9.0	3	100	0	54	33	0	0	66	0.92
29776920--29776953	14	2.3	14	90	10	50	38	0	5	55	1.24
29781099--29781124	8	3.2	8	100	0	52	26	0	26	46	1.53
29787220--29787403	50	3.7	50	79	6	178	23	26	21	28	1.99
29795322--29795459	27	5.1	27	88	0	186	34	16	24	24	1.96
29798795--29799059	44	6.0	44	82	4	327	37	18	20	23	1.94
29798795--29799057	89	3.0	88	86	2	348	37	19	20	23	1.94
29801048--29801072	11	2.3	11	100	0	50	60	28	0	12	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29802362--29802428	20	3.4	19	76	15	64	46	11	29	11	1.77
29802688--29802725	16	2.4	16	82	13	51	60	15	0	23	1.35
29802856--29802893	18	2.1	19	85	14	53	39	10	5	44	1.61
29805023--29805069	24	1.9	25	87	12	71	40	0	31	27	1.57
29805049--29805287	120	2.0	120	97	0	453	31	2	38	27	1.68
29806229--29806837	27	22.6	27	84	0	615	42	21	17	18	1.89
29823542--29823580	13	2.9	13	88	3	60	74	0	0	25	0.82
29824622--29824736	22	5.3	21	71	14	74	37	7	2	52	1.45
29824704--29824755	13	4.1	12	78	11	50	36	0	1	61	1.07
29827371--29827404	17	2.1	15	89	10	50	41	0	0	58	0.98
29827874--29828428	185	3.0	185	95	0	948	32	12	11	43	1.78
29829997--29830041	18	2.4	19	85	3	56	40	4	8	46	1.55
29830044--29830103	18	3.4	18	82	11	79	23	0	5	71	1.05
29835997--29836148	72	2.1	73	85	3	209	15	15	24	44	1.86
29835997--29836179	24	7.6	24	77	4	154	16	14	24	45	1.84
29839227--29839277	25	2.1	24	82	10	59	45	11	7	35	1.70
29839691--29839923	88	2.6	88	87	2	315	35	18	10	35	1.85
29840017--29840091	29	2.6	28	75	12	71	61	0	2	36	1.10
29840029--29840069	21	1.9	22	85	5	57	63	0	0	36	0.95
29840078--29840103	12	2.2	12	100	0	52	76	0	7	15	0.99
29840240--29840271	11	2.8	11	95	4	55	28	9	0	62	1.26
29840411--29840458	23	2.1	22	85	11	62	25	6	2	66	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29840411--29840477	22	3.0	21	80	10	64	28	5	2	62	1.33
29840647--29840884	94	2.6	87	80	10	248	36	11	15	36	1.84
29851605--29851701	25	3.9	25	68	10	72	20	24	15	39	1.91
29851607--29851720	50	2.3	50	84	0	147	22	26	14	36	1.92
29860663--29860712	26	1.9	26	83	0	64	56	4	0	40	1.18
29862586--29862648	25	2.5	25	84	5	74	31	17	14	36	1.90
29865250--29865662	208	2.0	208	95	0	738	26	19	4	49	1.68
29866708--29866758	21	2.4	21	73	3	57	21	19	17	41	1.91
29867337--29867401	18	3.4	18	74	12	67	35	23	20	21	1.96
29867346--29867421	21	3.8	21	72	10	77	31	18	23	26	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228