genome.fa.s23.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  35  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10660759--10660811	17	3.0	17	78	21	56	32	5	0	62	1.19
10663263--10663325	25	2.7	23	83	9	81	36	4	0	58	1.19
10669351--10669414	28	2.3	28	100	0	128	28	9	29	32	1.88
10673307--10673344	17	2.2	17	95	0	67	36	5	15	42	1.70
10674181--10674374	97	2.0	97	91	0	316	32	21	16	28	1.95
10678179--10678328	41	3.7	41	87	3	212	22	27	21	28	1.99
10678177--10678351	82	2.1	83	82	7	223	24	26	20	28	1.99
10679861--10679906	25	1.9	23	83	16	58	39	13	0	47	1.42
10680961--10681002	17	2.4	18	88	11	70	33	4	21	40	1.74
10682073--10682121	20	2.2	24	79	17	61	34	0	8	57	1.29
10682076--10682127	23	2.5	20	84	9	59	40	0	7	51	1.30
10689356--10689380	9	2.8	9	100	0	50	20	12	12	56	1.67
10693432--10693476	22	2.0	22	91	0	72	48	15	2	33	1.57
10697209--10697253	22	2.0	22	91	0	72	48	15	2	33	1.57
10698424--10698452	15	1.9	15	100	0	58	55	6	20	17	1.65
10705077--10705127	26	2.0	26	100	0	102	37	27	3	31	1.75
10708816--10708848	17	2.0	16	94	5	57	42	6	21	30	1.77
10710335--10710407	38	1.9	38	100	0	146	56	8	2	32	1.43
10713878--10713965	41	2.1	41	100	0	176	35	18	15	30	1.92
10716017--10716107	21	4.3	21	80	0	101	47	18	21	12	1.81
10716027--10716118	42	2.2	42	82	3	114	46	19	20	13	1.83
10725835--10725859	7	3.6	7	100	0	50	28	0	12	60	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10726343--10726406	29	2.2	30	80	2	76	31	46	15	6	1.71
10726460--10726497	18	2.1	18	90	0	58	21	26	10	42	1.85
10731917--10731950	16	2.0	18	88	11	54	0	38	0	61	0.96
10733120--10733532	124	3.3	126	88	1	632	27	20	16	35	1.94
10733569--10733995	96	4.5	95	88	3	617	38	18	2	40	1.64
10741253--10741419	43	3.9	43	82	4	194	16	22	16	45	1.85
10741259--10741419	86	1.9	86	85	2	225	16	21	16	45	1.85
10744018--10744053	15	2.5	14	86	8	54	44	8	0	47	1.33
10745450--10745497	13	3.7	13	82	0	60	39	22	4	33	1.74
10747982--10748039	30	1.9	30	96	0	107	58	15	3	22	1.52
10748084--10748122	11	3.5	11	78	0	51	61	7	10	20	1.52
10748076--10748118	22	2.0	22	85	0	59	60	9	9	20	1.55
10750685--10750761	36	2.1	36	83	4	93	16	12	28	41	1.86
10753402--10753438	16	2.3	16	95	0	65	43	2	18	35	1.65
10754151--10754176	10	2.6	10	100	0	52	19	0	23	57	1.40
10758158--10758244	33	2.7	32	79	13	106	44	17	10	27	1.81
10758224--10758289	34	1.9	34	87	6	98	46	10	9	33	1.70
10770232--10770275	12	3.7	12	75	0	52	25	0	43	31	1.55
10783062--10783312	132	1.9	132	90	1	396	33	21	21	23	1.97
10795729--10795771	22	2.0	22	90	0	68	46	16	2	34	1.60
10799463--10799505	22	2.0	22	90	0	68	46	16	2	34	1.60
10814377--10814907	113	4.9	112	83	10	683	37	13	16	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10814617--10814908	112	2.8	98	86	9	352	40	12	15	31	1.85
10817597--10817661	24	2.5	27	85	9	82	24	13	15	46	1.82
10817653--10817740	44	2.0	43	82	6	106	26	1	54	18	1.50
10821609--10821641	17	1.9	18	88	11	52	42	12	0	45	1.41
10824309--10824404	28	3.4	28	84	8	122	30	23	22	22	1.99
10824323--10824404	30	2.8	28	87	5	101	31	25	19	23	1.98
10824752--10825004	27	9.3	27	84	7	316	18	21	17	41	1.90
10824724--10825012	54	5.3	53	85	6	359	20	20	16	41	1.90
10824752--10825012	81	3.2	80	85	6	357	19	21	16	42	1.90
10827772--10827811	20	2.0	20	90	0	62	42	0	27	30	1.56
10837895--10837924	6	5.0	6	100	0	60	16	33	50	0	1.46
10841065--10841096	3	10.7	3	100	0	64	68	0	0	31	0.90
10845214--10845245	12	2.8	11	90	9	55	0	21	0	78	0.76
10866554--10866596	21	2.1	21	82	4	52	34	4	20	39	1.74
10870367--10870412	14	3.3	14	93	0	83	56	2	0	41	1.11
10872159--10872226	16	4.2	16	92	0	118	27	0	33	38	1.57
10872442--10872483	15	2.7	16	82	14	52	52	2	0	45	1.13
10872451--10872492	15	2.9	15	82	10	52	52	0	0	47	1.00
10872658--10872718	28	2.2	28	85	5	81	50	3	0	45	1.17
10876207--10876243	15	2.5	15	90	0	56	45	0	2	51	1.15
10879824--10879884	28	2.2	28	85	5	81	45	0	3	50	1.17
10880059--10880100	15	2.7	16	82	14	52	45	0	2	52	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10880050--10880091	15	2.9	15	82	10	52	47	0	0	52	1.00
10880316--10880383	16	4.2	16	96	0	127	38	35	0	26	1.57
10891403--10891643	43	5.6	43	85	1	313	33	28	15	22	1.95
10891403--10891644	85	2.8	85	86	1	304	33	28	15	22	1.94
10892323--10892373	4	12.8	4	100	0	102	50	23	0	25	1.49
10895433--10895473	20	2.2	20	82	8	50	41	9	0	48	1.36
10895592--10895636	22	2.0	22	86	0	63	35	37	0	26	1.57
10895617--10895650	14	2.4	14	90	9	52	32	44	0	23	1.54
10895733--10895784	21	2.7	18	85	8	59	53	19	13	13	1.72
10895939--10895990	7	7.3	7	81	12	61	46	36	0	17	1.48
10895940--10896000	15	4.2	15	77	10	56	49	32	0	18	1.48
10898000--10898107	40	2.6	42	85	2	148	25	20	19	34	1.96
10903956--10904265	9	35.3	9	74	13	272	31	1	21	45	1.60
10903980--10904046	26	2.6	26	97	0	125	32	2	20	43	1.67
10903965--10904037	19	4.6	17	71	28	72	31	4	21	42	1.72
10904005--10904255	25	9.6	25	73	15	113	31	0	21	46	1.57
10903956--10904265	62	5.2	60	73	18	231	31	1	21	45	1.60
10903960--10904264	43	7.0	43	76	14	259	31	1	21	45	1.60
10904429--10904462	12	2.8	13	86	13	54	50	0	0	50	1.00
10905280--10905359	31	2.6	31	95	0	142	43	22	16	17	1.87
10907280--10907359	39	2.1	39	90	4	126	38	40	2	18	1.64
10907639--10907678	17	2.5	15	84	11	53	35	47	0	17	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10908035--10908065	9	3.4	9	90	0	53	25	12	22	38	1.90
10908119--10908155	9	4.1	9	92	0	65	45	13	10	29	1.77
10908367--10908426	30	2.0	31	86	3	86	20	40	0	40	1.52
10908527--10908581	20	2.8	20	97	0	101	23	27	0	49	1.51
10909245--10909643	113	3.5	113	78	9	418	26	23	22	27	1.99
10909272--10909684	227	1.8	227	81	5	512	26	23	21	27	1.99
10911122--10911201	37	2.2	37	97	2	153	30	16	10	43	1.80
10915973--10916007	17	2.1	17	89	10	54	71	5	2	20	1.19
10916179--10916220	15	3.2	13	78	15	50	57	0	2	40	1.12
10919145--10919176	13	2.5	13	94	0	55	59	0	3	37	1.13
10923963--10924029	29	2.3	29	80	14	84	34	1	0	64	1.03
10923967--10924040	31	2.3	33	83	4	89	35	2	1	60	1.19
10929057--10929213	37	4.0	37	82	14	199	26	21	15	36	1.93
10929130--10929496	46	7.6	46	86	7	437	29	22	14	34	1.93
10929173--10929490	52	6.3	52	86	7	417	28	22	13	34	1.93
10929130--10929482	196	1.8	196	92	0	598	28	22	14	34	1.93
10929130--10929496	98	3.7	97	84	9	492	29	22	14	34	1.93
10932585--10932885	46	6.3	48	84	8	366	35	14	21	28	1.93
10932519--10932874	98	3.6	98	96	0	640	34	14	21	28	1.94
10934659--10935339	50	13.6	50	67	2	389	29	24	24	21	1.99
10934625--10935351	100	7.3	100	90	0	1116	28	23	25	21	1.99
10936769--10936840	33	2.1	33	85	10	92	36	2	1	59	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10936765--10936829	29	2.3	29	80	15	82	35	1	0	63	1.04
10938633--10938679	22	2.1	22	88	0	67	55	17	17	10	1.69
10940890--10940933	20	2.2	20	88	8	63	56	4	2	36	1.32
10946509--10946546	15	2.6	15	83	4	51	26	10	7	55	1.61
10950159--10950206	20	2.5	20	80	10	55	10	25	22	41	1.85
10951981--10952010	14	2.1	14	93	0	51	56	6	0	36	1.26
10953105--10953142	17	2.3	17	90	4	60	57	2	0	39	1.12
10954514--10954791	94	3.0	93	87	3	387	40	23	13	21	1.89
10956094--10956213	33	3.7	33	85	3	156	40	33	10	16	1.82
10961896--10962018	42	3.0	43	79	9	139	43	17	20	18	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228