genome.fa.s23.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  125  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36886053--36886099	20	2.3	20	85	0	67	29	36	12	21	1.91
36888861--36889042	28	6.5	28	96	0	303	26	12	27	33	1.92
36890566--36890913	40	8.7	40	91	1	529	23	28	19	28	1.99
36901974--36902016	18	2.4	18	77	14	52	46	6	9	37	1.63
36902465--36902641	28	6.4	28	88	2	232	26	12	27	32	1.93
36906831--36906908	18	4.3	18	85	4	104	42	16	12	28	1.85
36906831--36906908	9	8.7	9	76	10	79	42	16	12	28	1.85
36911376--36911421	10	4.5	10	88	2	65	28	0	23	47	1.52
36930018--36930285	104	2.6	105	93	1	450	18	20	30	29	1.97
36936069--36936187	41	2.9	42	79	10	129	31	15	21	31	1.95
36943854--36943926	32	2.3	32	90	0	110	31	26	13	28	1.94
36943818--36943996	93	1.9	93	82	2	225	26	25	16	31	1.96
36944366--36944420	27	2.0	28	82	3	67	27	25	10	36	1.89
36944906--36944950	22	2.0	22	91	0	72	31	31	8	28	1.88
36956759--36956804	23	2.0	24	83	8	60	0	58	0	41	0.98
36956769--36956806	11	3.2	12	92	7	60	0	52	0	47	1.00
36957271--36957341	3	23.3	3	74	8	63	30	1	5	61	1.27
36957283--36957344	23	2.8	22	87	4	81	32	1	8	58	1.37
36957307--36957352	23	2.0	23	82	0	56	30	4	10	54	1.55
36959117--36959158	22	1.9	22	90	9	68	45	0	11	42	1.41
36961822--36961851	11	2.7	11	94	0	51	40	0	0	60	0.97
36962110--36962139	2	15.0	2	92	0	51	0	50	3	46	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36966032--36966114	36	2.3	37	79	6	98	27	9	27	34	1.88
36969361--36969389	14	2.1	14	100	0	58	37	0	0	62	0.96
36974217--36974253	9	4.1	9	92	0	65	45	13	10	29	1.77
36974467--36974526	30	2.0	31	90	3	95	20	38	0	41	1.52
36978339--36978443	54	1.9	54	88	0	156	25	19	28	26	1.98
36978343--36978463	54	2.2	54	82	2	145	27	19	26	27	1.99
36986622--36986658	18	2.1	18	94	0	65	29	40	8	21	1.82
36986778--36986827	26	1.9	26	83	0	64	18	6	28	48	1.71
36989416--36989775	47	7.6	47	92	2	585	33	8	29	28	1.87
36989416--36989775	96	3.8	94	92	2	585	33	8	29	28	1.87
36989410--36989775	143	2.6	143	93	1	621	32	8	29	29	1.87
36989894--36989972	37	2.1	37	88	4	115	24	17	31	26	1.97
36993441--36993465	13	1.9	13	100	0	50	40	48	0	12	1.40
36993446--36993523	38	2.0	39	92	2	131	51	26	3	17	1.63
36993655--36993718	17	3.6	17	70	12	56	34	3	12	50	1.56
36993721--36993756	18	1.9	19	88	5	56	27	11	19	41	1.85
37001820--37001899	3	26.7	3	77	5	81	63	0	7	28	1.21
37004287--37004325	3	13.0	3	100	0	78	66	0	0	33	0.92
37018199--37018277	38	2.1	38	85	4	106	34	16	24	25	1.95
37020489--37020671	42	4.4	42	81	2	208	30	21	18	29	1.97
37021609--37021816	4	52.0	4	93	0	344	46	25	3	25	1.68
37023839--37024019	50	3.7	50	85	1	222	26	22	29	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37023852--37024032	100	1.8	100	83	0	245	26	21	29	22	1.99
37028847--37029159	41	7.6	40	81	2	329	21	28	16	32	1.95
37029007--37029073	21	3.2	21	69	12	66	16	32	22	28	1.95
37028847--37029153	123	2.5	123	84	3	377	21	28	17	32	1.96
37044373--37044400	13	2.2	13	100	0	56	25	21	14	39	1.91
37046237--37046261	5	5.0	5	100	0	50	20	0	0	80	0.72
37050705--37050953	33	7.3	33	67	26	119	34	28	18	18	1.95
37050736--37050785	26	1.9	26	100	0	100	28	34	24	14	1.93
37050599--37050966	102	3.6	103	92	1	614	32	29	19	18	1.96
37053144--37053221	29	2.7	28	84	11	104	25	14	30	29	1.94
37053174--37053501	174	1.9	174	96	0	602	29	14	24	30	1.95
37061286--37061363	29	2.7	28	84	11	104	25	14	30	29	1.94
37061316--37061643	174	1.9	174	95	0	593	30	14	24	30	1.94
37066150--37066263	43	2.7	43	80	13	135	24	20	26	28	1.99
37067239--37067635	23	17.1	23	87	1	551	27	12	19	40	1.88
37067239--37067635	116	3.4	116	89	1	573	27	12	19	40	1.88
37078072--37078111	14	2.9	14	78	14	55	80	0	17	2	0.83
37082441--37082480	17	2.4	17	86	0	53	32	32	5	30	1.79
37092622--37092672	26	2.0	26	96	0	93	29	35	23	11	1.90
37092528--37092750	103	2.2	104	92	2	369	31	31	18	17	1.95
37100950--37101040	45	2.0	45	91	0	146	20	31	13	34	1.91
37107097--37107183	44	2.0	44	100	0	174	36	9	20	33	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37110212--37110263	28	1.9	27	84	7	70	48	11	9	30	1.72
37110223--37110296	38	1.9	39	88	2	114	48	10	9	31	1.70
37110218--37110320	38	2.6	38	77	7	109	48	11	9	30	1.72
37110311--37110385	38	1.9	39	91	2	125	42	8	10	38	1.69
37113496--37113537	12	3.5	12	75	12	50	9	11	0	78	0.96
37113491--37113549	20	2.8	20	79	20	66	6	15	1	76	1.07
37113492--37113535	24	1.9	24	90	9	74	9	13	0	77	0.99
37125396--37125478	39	2.1	38	84	4	103	43	9	10	36	1.73
37125463--37125552	36	2.4	37	76	10	94	46	6	10	36	1.64
37132777--37133039	120	2.2	120	81	6	302	26	21	26	25	1.99
37132777--37133039	40	6.6	40	85	4	273	26	21	26	25	1.99
37132778--37133074	80	3.7	79	81	4	262	27	21	26	24	1.99
37179328--37179361	16	2.1	17	88	5	52	35	20	5	38	1.77
37181138--37181174	14	2.6	14	95	0	65	21	0	13	64	1.27
37191912--37192618	27	26.3	27	81	4	732	43	19	19	17	1.88
37192939--37193058	28	4.3	28	84	0	159	20	25	22	31	1.98
37192939--37193058	56	2.1	56	89	3	179	20	25	22	31	1.98
37211107--37211156	25	2.0	25	100	0	100	40	20	8	32	1.81
37223666--37223711	16	2.9	16	81	12	67	26	23	4	45	1.71
37225203--37225260	25	2.3	25	81	0	71	32	24	17	25	1.96
37233772--37233872	49	2.1	49	86	0	139	24	25	19	29	1.99
37233777--37233913	25	5.5	24	71	14	91	24	25	21	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37248945--37249152	28	7.5	28	94	2	341	31	28	13	26	1.94
37248945--37249152	55	3.8	55	94	1	353	31	28	13	26	1.94
37248945--37249152	111	1.9	110	92	1	353	31	28	13	26	1.94
37257185--37257367	27	6.7	28	93	3	277	31	28	14	25	1.94
37280414--37280746	47	7.1	47	93	0	522	32	9	30	28	1.88
37282758--37282860	43	2.4	43	98	0	197	22	16	35	25	1.94
37282838--37282915	29	2.8	28	83	13	97	28	16	32	23	1.96
37283223--37283418	40	4.9	40	81	5	184	26	22	27	24	2.00
37283223--37283419	80	2.5	81	82	5	222	25	22	26	24	2.00
37283581--37283632	25	2.1	25	82	7	61	32	7	28	30	1.85
37286828--37287042	47	4.8	42	94	4	263	32	7	29	30	1.86
37286868--37287093	47	4.8	47	91	0	344	31	9	31	27	1.88
37286815--37287093	94	3.0	91	85	8	361	31	9	31	27	1.88
37286815--37287076	141	1.9	134	87	5	380	30	9	31	27	1.89
37290845--37290981	40	3.4	40	95	0	247	26	22	22	28	1.99
37292018--37292181	43	3.8	43	84	4	206	19	20	29	30	1.97
37296641--37296708	3	22.0	3	79	11	50	67	0	5	26	1.13
37298199--37298570	44	8.5	44	75	6	301	28	20	20	30	1.98
37298149--37298565	128	3.2	127	74	8	408	28	21	20	30	1.98
37299711--37299821	45	2.4	45	83	3	132	14	23	18	44	1.86
37307231--37307306	37	2.1	37	89	0	116	26	32	18	22	1.97
37307427--37308180	47	15.6	47	83	9	874	29	30	8	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37307427--37308180	141	5.2	141	85	8	1008	29	30	8	31	1.86
37307864--37307902	19	2.1	19	100	0	78	33	30	0	35	1.58
37307723--37308043	160	2.0	160	98	0	615	29	30	8	31	1.86
37307770--37307996	113	2.0	113	98	0	436	29	30	7	31	1.86
37307817--37307949	66	2.0	66	97	0	248	30	30	6	32	1.83
37307676--37308090	207	2.0	207	97	0	776	29	30	8	31	1.86
37307629--37308137	254	2.0	254	97	0	955	29	30	8	31	1.86
37311482--37311524	17	2.6	17	92	3	70	25	27	9	37	1.87
37316127--37316153	13	2.1	13	100	0	54	22	33	0	44	1.53
37332205--37332417	28	7.7	28	95	2	351	31	28	14	25	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228