genome.fa.s23.2.7.7.80.10.50.1000.218.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  218  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63943037--63943093	8	6.8	8	79	15	53	31	1	1	64	1.13
63943020--63943091	26	2.8	26	83	12	78	33	1	1	63	1.11
63949646--63949680	17	2.1	17	94	0	61	25	37	0	37	1.57
63952891--63952950	27	2.2	27	100	0	120	36	3	10	50	1.53
63955910--63955949	3	13.3	3	100	0	80	65	0	0	35	0.93
63959204--63959241	20	1.9	20	94	0	67	50	0	28	21	1.49
63960900--63960959	23	2.5	24	76	13	70	31	1	0	66	1.01
63961707--63961746	21	2.0	21	90	5	64	30	7	0	62	1.23
63964426--63964645	112	2.0	111	86	2	307	32	19	16	31	1.94
63964677--63964729	28	1.9	28	84	3	72	24	9	3	62	1.42
63965515--63965645	64	2.0	64	100	0	262	40	16	12	30	1.85
63969097--63969146	17	2.7	20	78	18	70	10	0	44	46	1.37
63973736--63973785	17	2.7	20	78	18	70	10	0	44	46	1.37
63975180--63975228	19	2.4	21	80	16	59	32	4	0	63	1.13
63976278--63976308	14	2.2	14	100	0	62	32	0	0	67	0.91
63976930--63976974	22	2.1	21	92	8	74	26	4	0	68	1.08
63980013--63980052	15	2.6	15	84	4	53	67	0	0	32	0.91
63986444--63986483	19	2.1	19	85	0	53	22	10	32	35	1.87
63997998--63998042	10	4.9	9	83	10	56	77	0	8	13	0.98
63997990--63998055	27	2.4	27	78	9	73	77	0	7	15	0.98
64010928--64011087	71	2.3	71	89	0	239	31	14	15	38	1.88
64018879--64018971	18	5.2	18	85	0	132	33	16	22	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64018879--64018971	36	2.6	36	91	0	150	33	16	22	27	1.95
64024240--64024269	15	1.9	16	93	6	53	23	3	0	73	0.98
64024654--64024680	11	2.5	11	100	0	54	29	0	0	70	0.88
64029896--64029925	6	5.0	6	100	0	60	16	16	50	16	1.79
64032529--64032576	24	2.0	24	100	0	96	45	29	8	16	1.76
64036433--64036592	71	2.3	71	93	0	266	30	13	16	38	1.88
64038346--64038370	3	8.3	3	100	0	50	64	0	0	36	0.94
64047142--64047182	20	2.0	20	100	0	82	56	0	24	19	1.42
64047938--64048025	44	2.0	44	100	0	176	45	11	11	31	1.76
64051495--64051550	23	2.3	25	84	9	71	33	3	0	62	1.12
64055313--64055372	21	2.9	21	94	0	102	38	18	30	13	1.89
64058390--64058455	30	2.2	31	78	10	75	66	0	1	31	1.01
64062898--64062958	3	20.3	3	89	0	95	31	3	1	63	1.20
64074932--64074980	26	1.9	25	83	4	62	26	2	10	61	1.39
64079258--64079304	21	2.2	22	92	3	78	21	38	19	21	1.94
64083862--64083906	23	2.0	22	87	8	65	40	4	2	53	1.33
64085801--64086213	18	23.8	17	69	16	84	45	11	12	30	1.76
64085800--64086213	17	23.8	17	70	13	193	45	11	12	30	1.76
64085816--64086222	35	11.6	35	71	13	191	44	11	12	31	1.78
64085938--64086222	18	16.1	18	74	17	224	44	10	13	31	1.78
64085941--64086223	35	8.0	36	78	7	199	44	10	13	31	1.77
64086735--64086779	16	2.8	16	93	3	72	0	22	0	77	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64086769--64086802	13	2.6	13	95	0	59	0	23	0	76	0.79
64086736--64086779	8	5.4	8	83	5	61	0	20	0	79	0.73
64087097--64087165	4	18.5	4	79	11	60	1	26	0	72	0.93
64087097--64087149	27	2.0	27	88	0	79	0	26	0	73	0.83
64087094--64087161	7	9.0	7	79	17	66	1	26	0	72	0.94
64087097--64087165	17	4.7	15	76	20	74	1	26	0	72	0.93
64087669--64087805	30	4.6	30	73	10	113	42	2	21	32	1.68
64087648--64087798	59	2.5	59	84	5	171	40	2	23	33	1.69
64092876--64092939	22	2.9	21	79	9	56	40	6	1	51	1.36
64092931--64092973	20	2.2	19	84	12	52	30	0	11	58	1.34
64093578--64093627	26	1.9	26	83	0	64	26	2	10	62	1.38
64094764--64094809	24	1.9	24	86	0	65	43	19	2	34	1.63
64098527--64098569	17	2.6	16	82	13	52	39	0	18	41	1.51
64098513--64098556	17	2.5	19	82	17	60	36	0	20	43	1.52
64098690--64098732	18	2.4	18	88	0	68	65	9	4	20	1.40
64100087--64100122	12	3.0	12	91	0	54	41	0	0	58	0.98
64103503--64103551	25	2.0	24	84	4	62	44	0	4	51	1.20
64113898--64113928	3	10.7	3	93	6	55	67	0	32	0	0.91
64116344--64116448	31	3.4	31	94	0	183	41	18	15	24	1.88
64117483--64117528	25	1.9	25	82	8	60	10	13	13	63	1.53
64122805--64122845	18	2.2	19	87	12	59	24	0	9	65	1.22
64124992--64125035	21	2.1	21	82	0	52	61	15	4	18	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64125774--64125823	24	2.3	22	86	13	68	70	2	0	28	0.99
64125793--64125832	20	2.0	20	85	9	55	75	0	0	25	0.81
64128299--64128359	28	2.1	28	84	3	77	18	19	27	34	1.95
64128664--64128700	15	2.5	15	90	0	56	35	18	18	27	1.95
64133690--64133741	18	2.7	21	72	22	60	21	9	0	69	1.17
64140711--64140766	29	2.0	29	85	3	78	30	14	7	48	1.70
64141408--64141445	3	13.0	3	94	5	69	68	0	31	0	0.90
64144759--64144816	27	2.1	28	87	9	84	36	0	6	56	1.26
64159986--64160082	38	2.6	38	85	3	124	35	16	16	31	1.91
64163759--64163837	28	2.9	27	79	9	88	37	16	12	32	1.86
64163804--64163915	32	3.6	31	75	9	95	28	17	13	40	1.88
64169582--64169652	28	2.5	28	81	0	97	28	16	19	35	1.94
64173923--64173965	19	2.1	21	83	8	54	76	0	4	18	0.95
64173982--64174028	20	2.1	22	85	14	62	40	14	10	34	1.81
64176545--64176744	101	2.0	101	88	0	301	30	26	17	26	1.97
64180712--64180765	27	2.0	26	85	3	72	11	11	7	70	1.34
64181586--64181640	22	2.4	22	78	9	56	32	5	7	54	1.51
64184880--64184917	18	2.2	18	85	4	51	34	7	15	42	1.76
64191849--64191919	28	2.5	29	79	6	92	28	16	21	33	1.95
64195923--64195969	20	2.4	19	83	13	60	74	0	6	19	1.03
64200351--64200421	28	2.5	28	77	4	81	23	16	22	36	1.94
64203458--64203484	12	2.2	12	100	0	54	14	18	18	48	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64209628--64209674	20	2.3	20	81	0	58	27	0	8	63	1.23
64211996--64212055	11	5.4	11	72	18	52	40	5	0	55	1.22
64213521--64213566	22	2.1	22	100	0	92	39	17	13	30	1.87
64213713--64213838	70	1.9	63	81	15	150	43	15	11	28	1.83
64225789--64225841	28	1.9	27	85	11	72	35	0	3	60	1.15
64228709--64228752	20	2.2	20	96	4	81	29	31	4	34	1.78
64237732--64237762	16	1.9	16	93	0	53	16	16	9	58	1.63
64239851--64239932	31	2.6	31	86	0	110	51	9	13	25	1.71
64240359--64240385	6	4.5	6	100	0	54	33	0	48	18	1.49
64240532--64240620	6	13.8	6	82	13	97	52	1	44	1	1.15
64240510--64240620	39	2.8	39	80	2	134	51	1	45	1	1.22
64240524--64240614	33	2.7	34	81	8	107	52	1	45	1	1.15
64240512--64240612	27	3.6	27	75	18	91	50	1	45	1	1.24
64252173--64252205	7	4.7	7	100	0	66	72	0	0	27	0.85
64253645--64253750	37	2.9	37	73	20	98	46	2	0	50	1.16
64261139--64261185	21	2.2	21	88	7	69	25	25	19	29	1.98
64263052--64263094	22	2.0	22	90	0	68	34	9	4	51	1.55
64272192--64272402	101	2.1	101	85	0	287	31	16	23	28	1.96
64274085--64274382	51	5.9	50	74	5	258	30	14	25	29	1.95
64274084--64274370	102	2.8	100	87	1	376	30	14	25	29	1.95
64278966--64279001	16	2.2	17	90	5	56	83	0	13	2	0.76
64289291--64289324	16	2.2	15	89	5	50	50	2	5	41	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64294352--64294565	101	2.1	102	86	4	308	29	16	25	28	1.97
64294382--64294598	101	2.2	101	84	4	269	30	16	24	28	1.96
64301475--64301549	27	2.8	27	83	4	98	24	28	28	20	1.99
64301609--64301670	26	2.3	26	76	15	65	58	3	0	38	1.15
64301655--64301806	52	2.9	54	88	3	204	41	9	17	31	1.82
64310617--64310643	7	3.9	7	100	0	54	88	0	0	11	0.50
64319018--64319075	25	2.4	23	80	5	62	67	5	5	22	1.31
64319503--64319541	19	2.1	18	90	9	60	35	0	2	61	1.10
64319505--64319548	20	2.2	20	84	8	54	36	0	2	61	1.09
64323469--64323816	43	8.2	41	77	7	265	32	21	20	25	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228