genome.fa.s23.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  138  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41398356--41398400	22	2.1	21	83	4	54	13	20	2	64	1.38
41418015--41418051	13	2.8	13	91	0	56	51	16	0	32	1.45
41423514--41423584	35	2.0	35	100	0	142	25	5	39	29	1.78
41426371--41426419	21	2.4	21	81	15	59	40	6	0	53	1.26
41427426--41427612	92	2.0	92	95	2	340	21	8	19	50	1.73
41429281--41429393	44	2.6	42	81	17	142	23	19	27	29	1.98
41432410--41432435	13	2.0	13	100	0	52	30	15	30	23	1.95
41432709--41432818	23	4.8	23	79	0	94	39	22	16	21	1.92
41432709--41432822	46	2.5	46	82	0	129	37	23	16	21	1.93
41439895--41440274	47	8.0	47	95	2	672	31	8	30	30	1.86
41439895--41440274	95	4.0	94	95	2	672	31	8	30	30	1.86
41442595--41442640	20	2.3	19	85	14	58	26	15	15	43	1.85
41442601--41442643	20	2.0	22	91	8	72	27	13	13	44	1.83
41445667--41445893	113	2.0	111	94	1	373	35	11	19	33	1.88
41446736--41446770	16	2.1	17	89	5	54	34	0	2	62	1.10
41446705--41446747	7	6.0	7	89	5	59	44	4	0	51	1.22
41446723--41446772	15	3.3	15	76	18	50	40	0	2	58	1.10
41447062--41447093	17	1.9	17	93	6	57	56	9	0	34	1.32
41447142--41447178	7	5.0	7	93	6	56	56	0	0	43	0.99
41447142--41447178	15	2.5	14	91	8	56	56	0	0	43	0.99
41448054--41448085	16	1.9	17	93	6	57	25	0	0	75	0.81
41448070--41448096	12	2.2	12	100	0	54	29	0	0	70	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41448050--41448113	28	2.3	28	83	2	76	28	1	0	70	0.97
41448147--41448175	14	2.1	14	100	0	58	41	0	0	58	0.98
41448161--41448205	18	2.4	18	88	7	63	42	0	6	51	1.28
41451689--41451827	73	1.9	73	82	8	176	18	23	23	35	1.96
41455662--41455927	47	5.6	47	92	2	424	28	30	8	32	1.86
41455662--41455927	96	2.8	96	94	1	446	28	30	8	32	1.86
41468342--41468370	15	1.9	15	100	0	58	41	0	0	58	0.98
41469433--41469577	40	3.6	40	73	3	121	23	28	16	31	1.96
41472286--41472322	19	2.0	18	94	5	65	64	2	0	32	1.07
41473918--41473967	26	1.9	27	84	8	68	52	14	6	28	1.65
41477228--41477270	22	2.0	22	81	9	52	46	4	0	48	1.22
41481546--41481742	98	2.0	98	92	0	331	28	9	23	38	1.85
41482754--41482784	11	2.7	12	90	10	55	45	0	0	54	0.99
41486035--41486081	23	2.0	23	100	0	94	38	4	14	42	1.66
41486614--41486676	29	2.1	31	88	5	94	36	11	9	42	1.73
41486905--41486965	20	3.0	20	73	4	59	65	3	3	27	1.24
41494251--41494299	25	2.0	25	83	0	62	24	20	20	34	1.96
41494261--41494321	25	2.4	25	88	0	86	21	18	26	34	1.96
41499831--41499862	16	2.0	16	93	0	55	25	15	0	59	1.36
41500326--41500523	51	3.9	51	77	5	197	31	27	16	23	1.96
41499966--41500445	245	2.0	245	98	0	924	34	25	16	24	1.95
41500325--41500517	101	1.9	102	84	3	264	31	26	17	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41504551--41504638	25	3.6	25	78	4	81	21	23	20	34	1.97
41513949--41513986	19	2.0	19	89	0	58	52	5	10	31	1.58
41514746--41515044	31	9.7	31	87	1	388	28	9	18	44	1.80
41514758--41515044	123	2.3	122	87	2	405	28	9	18	43	1.80
41514735--41515044	92	3.4	92	88	2	408	28	8	18	44	1.79
41522435--41522534	47	2.1	49	84	3	132	23	30	19	28	1.98
41529431--41529683	35	6.9	35	72	16	172	22	16	16	43	1.87
41529502--41529621	41	3.0	40	68	22	117	23	15	15	45	1.85
41529466--41529621	78	2.0	78	93	0	267	23	15	16	45	1.84
41530731--41530769	20	2.0	20	85	10	53	15	12	0	71	1.14
41531352--41531421	21	3.2	21	80	8	70	15	31	24	28	1.96
41532861--41532904	16	2.5	18	89	10	65	40	0	0	59	0.98
41543307--41544383	359	3.0	359	98	0	2100	28	26	15	29	1.96
41549599--41549633	16	2.1	17	89	5	54	74	11	0	14	1.08
41564796--41564837	17	2.5	16	82	17	50	28	0	2	69	1.01
41569931--41570027	44	2.2	44	85	10	126	31	5	24	38	1.78
41570117--41570252	58	2.4	58	82	3	168	54	2	1	41	1.24
41574234--41574299	20	3.3	20	82	0	60	10	30	21	37	1.87
41584754--41584779	13	2.0	13	100	0	52	69	7	0	23	1.14
41588229--41588307	13	6.1	13	75	5	52	40	18	3	36	1.69
41588405--41588462	30	1.9	30	89	0	89	41	1	6	50	1.39
41589027--41589053	3	9.0	3	100	0	54	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41589730--41589774	19	2.5	17	82	10	63	46	2	2	48	1.26
41589732--41589771	18	2.2	18	90	4	62	45	2	2	50	1.28
41591268--41591322	21	2.7	20	80	11	58	27	0	7	65	1.19
41596209--41596262	27	2.0	27	100	0	108	44	7	25	22	1.79
41600861--41600931	32	2.3	31	82	7	81	21	19	40	18	1.91
41601328--41601365	16	2.5	15	91	8	60	21	0	50	28	1.49
41627055--41627676	31	20.3	29	72	9	214	41	20	9	27	1.83
41627062--41627483	153	2.7	154	75	8	333	42	20	8	27	1.81
41627013--41627745	184	4.0	184	91	1	1119	42	20	9	28	1.83
41631732--41631971	120	2.0	120	99	0	471	59	15	10	15	1.61
41632143--41632167	12	2.1	12	100	0	50	32	8	16	44	1.76
41633251--41633325	33	2.2	34	85	2	98	42	12	6	38	1.68
41637289--41637313	12	2.1	12	100	0	50	32	8	16	44	1.76
41641314--41641718	31	13.2	31	68	8	137	41	19	10	28	1.84
41641303--41641616	154	2.0	154	90	1	495	41	20	9	28	1.84
41641303--41641683	154	2.5	154	85	2	471	41	20	10	27	1.84
41641453--41641792	62	5.5	60	73	8	202	42	19	9	28	1.82
41644412--41644534	29	4.3	28	74	7	88	25	14	21	39	1.91
41645034--41645060	11	2.5	11	100	0	54	0	25	0	74	0.83
41645025--41645062	10	3.8	10	83	10	51	0	23	0	76	0.79
41648173--41648241	34	2.0	34	97	0	129	31	13	40	14	1.84
41649689--41649763	23	3.3	21	73	15	69	42	17	13	26	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41651962--41652111	45	3.4	44	84	5	182	41	18	19	21	1.91
41653920--41653965	21	2.3	20	78	14	51	45	17	6	30	1.73
41671616--41671736	25	4.7	25	77	11	111	26	28	16	28	1.97
41676434--41676480	20	2.4	19	85	7	58	68	2	2	27	1.13
41676426--41676470	20	2.2	20	84	7	56	68	2	0	28	1.01
41676434--41676480	19	2.3	21	79	17	55	68	2	2	27	1.13
41682125--41682151	11	2.5	11	100	0	54	55	0	0	44	0.99
41684853--41684922	34	2.2	31	89	7	104	22	22	22	31	1.98
41688035--41688102	27	2.5	27	81	9	77	25	19	30	25	1.98
41689827--41689868	19	2.2	19	87	8	59	38	2	7	52	1.42
41689831--41689889	20	3.1	19	83	11	68	38	1	5	54	1.33
41689840--41689894	10	5.6	10	72	12	51	36	0	5	58	1.21
41690011--41690064	23	2.3	23	81	6	65	38	14	7	38	1.75
41696325--41696438	57	2.0	57	87	0	165	21	13	28	36	1.91
41701124--41701194	18	3.5	20	78	14	76	57	0	1	40	1.07
41701138--41701257	11	11.4	11	76	17	103	58	0	2	39	1.12
41701147--41701207	29	2.0	31	90	6	99	54	0	1	44	1.10
41701124--41701274	41	3.7	41	86	7	202	58	0	1	39	1.09
41701241--41701286	16	2.8	17	83	6	58	60	0	0	39	0.97
41709470--41709512	17	2.5	17	92	7	70	60	0	0	39	0.97
41714703--41714942	120	2.0	120	93	1	410	42	7	19	31	1.78
41719488--41719729	50	4.9	50	81	4	249	21	27	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41720066--41720123	30	1.9	30	85	0	80	31	24	8	36	1.85
41724977--41725164	27	7.0	26	86	6	198	42	19	17	20	1.89
41724973--41725166	54	3.6	52	83	10	223	41	19	17	21	1.90
41724973--41725164	80	2.4	81	83	6	239	42	19	17	20	1.90
41735850--41735881	2	16.0	2	100	0	64	0	50	0	50	1.00
41742879--41742912	12	2.8	12	91	8	52	55	17	0	26	1.42
41744557--41744599	20	2.2	20	87	8	61	27	0	4	67	1.10
41755454--41755493	18	2.1	20	90	9	66	37	2	5	55	1.35
41758798--41758895	27	3.5	28	87	2	126	27	13	27	31	1.94
41758828--41758909	27	2.9	27	85	5	83	30	12	23	34	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228