Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  52  of  228  ( 27298 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15743897--15743937
21
1.9
23
85
14
61
48
9
4
36
1.58
15744730--15744781
22
2.4
22
93
0
86
30
3
34
30
1.76
15744741--15744788
22
2.2
22
92
0
78
33
4
33
29
1.77
15753003--15753267
27
9.9
27
85
2
347
41
21
17
19
1.90
15759826--15759886
31
1.9
32
86
3
88
47
11
6
34
1.66
15759838--15759899
31
2.0
31
87
6
90
51
9
3
35
1.51
15765145--15765250
30
3.5
31
84
5
128
30
22
9
37
1.86
15765235--15765397
30
5.4
30
74
12
129
19
26
12
41
1.88
15767336--15767386
23
2.1
23
85
10
66
49
0
31
19
1.49
15768608--15768641
13
2.6
13
95
0
59
52
8
29
8
1.62
15769750--15769793
6
7.2
6
82
12
54
15
20
0
63
1.31
15773703--15773743
20
2.0
20
90
0
64
29
21
12
36
1.90
15773734--15773843
40
2.8
40
77
0
112
20
21
18
39
1.93
15782410--15782435
12
2.2
12
100
0
52
15
0
57
26
1.38
15783707--15783868
27
6.0
27
84
4
220
40
22
19
17
1.92
15783967--15784040
26
2.8
28
80
10
75
20
18
22
37
1.94
15784151--15784216
28
2.4
28
92
5
107
24
24
24
27
2.00
15784148--15784224
28
2.5
33
75
22
101
24
22
23
29
1.99
15789648--15789764
62
1.9
59
87
5
171
40
5
3
51
1.41
15790068--15790102
18
1.9
18
100
0
70
28
28
17
25
1.97
15801093--15801120
14
2.0
14
100
0
56
28
28
7
35
1.84
15810469--15810521
21
2.5
21
84
0
70
67
5
5
20
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15810566--15810672
51
2.1
51
83
10
130
74
2
1
20
1.03
15810575--15810670
14
7.2
13
71
14
79
76
3
2
18
1.03
15810607--15810672
24
3.0
22
75
22
66
77
1
1
19
0.93
15821458--15821501
18
2.4
18
88
0
70
31
29
25
13
1.94
15822831--15822856
13
2.0
13
100
0
52
30
38
7
23
1.83
15824558--15824611
9
6.1
9
77
14
51
33
1
1
62
1.16
15824722--15824827
9
12.1
9
67
18
55
37
0
0
60
1.10
15824711--15824772
17
3.8
17
76
16
51
35
1
1
61
1.16
15824726--15824802
16
4.7
16
72
8
57
38
1
1
58
1.15
15824817--15824851
18
1.9
18
88
0
52
31
17
2
48
1.61
15824891--15824952
20
3.4
20
75
18
64
30
4
0
64
1.14
15825824--15825865
19
2.2
19
95
0
75
76
0
7
16
1.00
15832356--15832408
19
2.8
18
85
5
70
39
0
7
52
1.30
15834840--15834888
20
2.5
20
96
0
89
44
12
16
26
1.82
15852131--15852170
21
1.9
21
100
0
80
20
10
27
42
1.83
15852724--15852810
28
3.1
28
93
0
138
32
26
20
20
1.97
15853010--15853075
22
3.0
22
72
16
73
46
24
18
10
1.80
15853240--15853330
27
3.4
26
76
11
94
20
16
17
45
1.86
15853295--15853409
27
4.3
27
78
0
113
21
15
17
45
1.85
15853295--15853409
54
2.1
54
83
0
140
21
15
17
45
1.85
15855366--15855407
21
2.0
21
90
0
66
16
16
28
38
1.91
15855922--15855987
28
2.4
28
92
0
105
30
25
22
21
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15856400--15856454
27
2.1
26
87
12
78
20
20
20
40
1.92
15856415--15856720
27
11.3
27
81
3
269
17
18
19
44
1.87
15856415--15856721
81
3.8
80
79
7
298
17
18
19
44
1.87
15856443--15856721
80
3.4
80
80
8
246
17
18
19
44
1.87
15863316--15863358
19
2.1
21
87
8
63
37
9
0
53
1.33
15869455--15869485
15
2.1
15
93
0
53
35
9
9
45
1.70
15871725--15871751
11
2.5
11
100
0
54
22
7
18
51
1.70
15873164--15873343
91
2.0
92
88
3
274
43
3
4
47
1.41
15873165--15873371
91
2.3
91
85
2
254
45
4
3
45
1.43
15873425--15873635
66
3.4
64
68
18
183
41
2
6
48
1.44
15873387--15873679
120
2.4
120
94
2
500
42
2
5
49
1.37
15873512--15873563
15
3.6
15
80
12
56
44
0
1
53
1.11
15873641--15873682
15
2.7
16
82
14
52
45
0
2
52
1.13
15873785--15873819
18
2.0
17
88
5
52
45
0
0
54
0.99
15873913--15874007
45
2.1
44
88
1
136
33
27
6
32
1.82
15875198--15875299
39
2.6
39
93
0
168
16
19
25
38
1.92
15875333--15875376
21
2.0
21
86
8
61
61
9
13
15
1.56
15882706--15882744
5
7.8
5
91
0
60
0
2
12
84
0.72
15883340--15883364
13
1.9
13
100
0
50
84
0
0
16
0.63
15885255--15885297
21
2.0
23
82
17
56
46
9
9
34
1.68
15889539--15889742
39
5.2
39
69
10
137
44
15
5
34
1.70
15889494--15889742
79
3.2
79
86
1
331
45
14
5
34
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15889572--15889690
40
3.0
40
73
11
127
46
17
4
31
1.67
15889495--15889714
39
5.6
39
69
13
137
44
14
5
35
1.68
15889775--15889829
23
2.4
23
82
11
60
52
0
3
43
1.18
15893798--15893959
51
3.2
51
97
0
297
32
14
22
30
1.94
15898453--15898678
39
5.8
38
73
11
197
42
15
7
34
1.77
15898408--15898666
78
3.3
78
87
2
358
42
15
7
34
1.75
15898696--15898737
22
2.0
22
90
4
68
57
0
0
42
0.99
15910491--15910547
24
2.3
25
83
16
75
45
0
1
52
1.11
15916002--15916045
13
3.5
13
78
12
56
70
0
2
27
0.99
15919673--15919704
13
2.5
13
95
5
57
71
0
0
28
0.86
15920182--15920273
19
4.8
19
93
0
157
36
16
8
38
1.79
15920159--15920273
38
2.9
38
92
5
176
38
16
7
37
1.78
15920909--15921808
44
20.8
44
69
12
422
27
22
20
30
1.98
15920869--15921414
217
2.5
217
93
0
923
26
23
20
28
1.99
15921099--15921634
173
3.1
173
80
7
692
27
22
21
29
1.99
15921177--15921683
89
5.8
87
71
13
305
26
22
21
29
1.99
15921303--15921543
129
1.9
129
84
1
331
25
22
21
29
1.99
15921179--15921706
173
3.1
173
78
6
663
26
22
21
29
1.99
15921179--15921765
173
3.4
172
77
6
628
26
21
21
30
1.98
15921086--15921807
346
2.1
346
87
1
1063
26
21
21
30
1.98
15921394--15921822
217
2.0
218
87
1
628
27
21
20
30
1.98
15922176--15922294
44
2.7
44
82
10
145
29
25
18
26
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15922294--15922871
88
6.6
88
89
0
859
21
24
26
27
1.99
15922355--15922584
43
5.3
43
65
10
133
20
26
26
26
1.99
15924071--15924116
23
2.0
23
82
0
56
2
23
0
73
0.94
15924200--15924232
14
2.3
15
89
5
50
27
30
12
30
1.92
15925039--15925099
26
2.3
26
83
5
70
57
4
14
22
1.57
15929365--15929418
3
17.0
3
77
11
54
74
0
0
25
0.83
15929365--15929416
6
8.0
7
93
6
76
75
0
0
25
0.81
15929892--15929983
19
4.8
19
94
0
166
38
16
8
36
1.79
15929869--15929983
38
2.9
38
93
5
185
39
16
7
36
1.78
15931839--15931882
23
1.9
23
85
0
61
31
0
2
65
1.05
15935739--15935769
12
2.6
12
94
0
53
3
16
3
77
1.03
15949216--15949540
87
3.7
87
90
0
454
33
23
21
22
1.97
15950117--15950152
12
3.1
12
88
4
56
5
13
2
77
1.05
15954034--15954094
25
2.4
25
80
0
68
27
24
18
29
1.98
15962829--15962883
22
2.5
24
80
11
64
52
3
0
43
1.18
15963176--15963219
3
14.3
3
90
4
70
65
0
0
34
0.93
15964068--15964136
35
2.0
35
97
0
129
18
11
50
18
1.76
15965186--15965218
12
2.8
12
86
4
50
57
0
0
42
0.98
15969040--15969076
14
2.5
15
84
16
51
35
0
2
62
1.10
15969124--15969171
8
6.1
8
92
2
80
62
0
12
25
1.30
15971067--15971116
26
2.0
25
84
7
66
60
0
12
28
1.32
15977428--15977456
14
2.1
14
100
0
58
41
34
0
24
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15978268--15978312
22
1.9
24
86
13
67
31
0
2
66
1.04
15978274--15978323
16
3.1
15
81
18
57
30
0
4
66
1.10
15979767--15979986
87
2.5
87
81
2
253
35
17
20
25
1.95
15981109--15981439
42
7.9
42
84
4
346
30
20
20
27
1.98
15981120--15981439
126
2.5
125
86
2
417
30
20
21
28
1.98
15987283--15987712
7
50.0
9
62
34
95
33
0
20
46
1.51
15987328--15987868
26
22.1
25
86
9
701
32
0
20
46
1.54
15987781--15987824
18
2.4
18
84
0
70
34
4
18
43
1.70
15987328--15987868
120
4.4
122
87
9
661
32
0
20
46
1.54
15987905--15988052
74
2.0
74
100
0
296
40
6
1
51
1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228