genome.fa.s23.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  123  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36264332--36264828	40	12.4	40	77	2	451	20	27	17	34	1.95
36264332--36264821	120	4.1	119	80	3	509	21	27	17	34	1.95
36275011--36275233	40	5.6	39	82	5	216	27	27	20	24	1.99
36275009--36275233	80	2.8	79	82	6	240	27	28	20	24	1.99
36275011--36275233	120	1.9	119	83	4	288	27	27	20	24	1.99
36288071--36288293	40	5.6	39	82	5	216	27	27	20	24	1.99
36288069--36288293	80	2.8	79	82	6	240	27	28	20	24	1.99
36288071--36288293	120	1.9	119	83	4	288	27	27	20	24	1.99
36293557--36293600	21	2.1	21	91	8	72	15	11	40	31	1.83
36296148--36296182	17	2.1	17	100	0	70	45	11	5	37	1.64
36299853--36299887	17	2.0	18	88	5	54	54	11	0	34	1.37
36303209--36303360	27	5.6	27	93	3	232	30	28	13	26	1.94
36303209--36303385	55	3.2	55	90	0	264	31	29	13	25	1.94
36311216--36311367	27	5.6	27	93	3	232	30	28	13	26	1.94
36311216--36311392	55	3.2	55	90	0	264	31	29	13	25	1.94
36318146--36318190	21	2.1	22	84	12	58	71	6	6	15	1.29
36321202--36321304	41	2.5	41	90	0	161	31	24	21	23	1.99
36322880--36322913	11	3.2	11	91	4	52	50	0	0	50	1.00
36322888--36322916	15	1.9	15	100	0	58	55	0	0	44	0.99
36329064--36329169	41	2.6	41	92	0	176	30	25	21	22	1.99
36330673--36330697	13	1.9	13	100	0	50	40	0	24	36	1.55
36330897--36331084	1	188.0	1	100	0	376	100	0	0	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36331136--36331185	18	2.9	17	78	3	55	10	0	8	82	0.86
36334137--36334174	14	2.4	16	87	12	53	42	2	7	47	1.46
36350497--36350539	19	2.2	19	87	4	59	55	2	0	41	1.12
36350495--36350543	16	2.8	17	82	17	57	57	2	0	40	1.10
36353154--36353204	7	7.3	7	93	0	66	15	60	0	23	1.35
36353162--36353217	14	3.9	14	88	4	76	14	60	0	25	1.34
36363712--36363754	21	2.0	21	100	0	86	27	32	13	25	1.94
36363947--36364068	43	2.8	43	87	0	163	38	25	14	21	1.92
36365453--36365630	27	6.6	27	82	3	178	30	28	14	26	1.95
36365453--36365630	54	3.3	55	82	3	200	30	28	14	26	1.95
36373532--36373709	27	6.6	27	83	3	178	30	28	15	26	1.96
36373558--36373708	82	1.9	81	88	4	232	29	27	15	27	1.96
36375487--36375621	43	3.1	43	78	6	130	37	20	13	28	1.90
36378102--36378372	43	6.3	43	79	3	224	40	20	12	26	1.88
36378110--36378294	86	2.2	86	87	0	262	41	21	12	24	1.88
36378102--36378372	129	2.1	128	83	5	332	40	20	12	26	1.88
36378110--36378321	86	2.5	86	84	0	253	41	21	13	24	1.89
36379463--36379528	33	2.0	33	100	0	132	36	27	9	27	1.87
36379472--36379529	19	3.3	19	63	22	54	36	31	8	24	1.85
36383010--36383042	17	1.9	17	100	0	66	12	12	15	60	1.59
36388262--36388315	12	4.7	12	78	15	60	74	1	0	24	0.92
36388264--36388304	4	10.5	4	80	15	50	73	2	0	24	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36388257--36388315	15	3.9	15	77	18	61	74	1	0	23	0.91
36388257--36388315	19	3.2	20	79	13	72	74	1	0	23	0.91
36390871--36391039	94	1.8	92	88	2	257	30	22	15	31	1.95
36390878--36391105	92	2.5	93	82	9	236	29	21	17	31	1.96
36399910--36399947	19	2.0	20	84	5	51	44	23	10	21	1.83
36401693--36401772	38	2.1	38	86	6	110	26	30	18	25	1.98
36401891--36402366	47	10.1	47	95	0	799	28	30	9	31	1.88
36405424--36405495	33	2.2	33	84	0	90	25	25	22	27	2.00
36405441--36405513	33	2.2	33	87	0	101	23	24	21	30	1.99
36429987--36430314	174	1.9	174	94	0	584	30	24	14	30	1.95
36430267--36430345	29	2.7	30	82	13	110	30	30	13	25	1.94
36439925--36439998	15	4.9	16	70	12	57	33	13	12	40	1.82
36446769--36447110	51	6.8	52	78	7	303	29	26	16	28	1.96
36446769--36447110	102	3.4	102	82	7	396	29	26	16	28	1.96
36446767--36447109	153	2.3	149	79	9	383	29	25	15	29	1.96
36447891--36447950	11	5.6	10	79	14	66	58	1	0	40	1.08
36447891--36447950	22	2.7	22	94	0	102	58	1	0	40	1.08
36449869--36450020	27	5.6	27	92	3	232	30	28	13	26	1.94
36449869--36450045	55	3.2	55	90	0	255	31	29	12	25	1.93
36453817--36453842	12	2.2	12	100	0	52	38	0	0	61	0.96
36455502--36455663	51	3.2	51	94	0	279	32	14	22	30	1.94
36456928--36456982	25	2.2	26	83	9	78	63	1	5	29	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36457647--36457680	16	2.2	15	89	5	50	55	0	0	44	0.99
36461471--36461580	50	2.2	52	80	3	134	35	13	14	36	1.86
36467286--36467509	40	5.7	39	85	7	274	26	27	21	24	2.00
36467286--36467509	118	1.9	119	82	8	287	26	27	21	24	2.00
36475266--36475528	119	2.2	120	85	5	345	26	27	20	25	1.99
36475266--36475530	40	6.7	40	87	5	340	26	27	21	24	1.99
36478696--36478782	33	2.6	33	85	0	111	42	13	25	18	1.87
36481015--36481049	16	2.1	17	89	5	54	11	51	0	37	1.38
36483000--36485065	683	3.0	683	98	0	4017	33	14	22	29	1.93
36489234--36489268	16	2.1	17	89	5	54	37	0	51	11	1.38
36491184--36491270	45	1.9	45	92	0	147	32	21	17	28	1.96
36491281--36491463	51	3.6	49	75	6	170	31	26	16	25	1.97
36491279--36491466	101	1.9	101	87	3	279	31	26	16	25	1.96
36499114--36499408	50	5.9	50	88	0	401	22	31	20	25	1.98
36502480--36502515	16	2.2	17	90	5	56	11	52	0	36	1.37
36504773--36505035	131	2.0	131	90	2	413	42	6	26	23	1.77
36517021--36517169	27	5.5	27	88	4	201	32	27	13	26	1.94
36517021--36517195	55	3.2	55	85	2	210	32	28	13	26	1.93
36525022--36525173	27	5.6	27	89	6	225	30	28	13	26	1.94
36525022--36525198	55	3.2	54	87	4	228	31	29	12	25	1.93
36529330--36529426	51	1.9	50	89	2	149	25	26	3	44	1.69
36530870--36530913	15	2.9	15	82	0	52	45	11	22	20	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36558752--36558800	20	2.4	20	82	3	62	34	14	14	36	1.86
36561011--36561052	17	2.5	16	88	7	57	42	4	0	52	1.22
36561406--36561495	44	2.0	44	86	0	126	48	3	10	37	1.53
36564325--36564393	35	2.0	35	94	0	120	55	2	14	27	1.54
36565211--36565257	20	2.4	19	82	10	60	53	0	21	25	1.46
36565722--36565770	24	2.0	24	84	8	62	24	6	20	48	1.72
36566072--36566193	54	2.3	54	80	4	129	27	23	31	17	1.97
36567733--36567854	27	4.5	26	80	5	118	11	24	23	40	1.88
36567733--36567854	54	2.2	55	81	9	135	11	24	23	40	1.88
36567840--36567870	13	2.4	13	94	0	53	6	12	19	61	1.53
36570235--36570299	28	2.3	28	97	0	121	13	24	21	40	1.90
36575061--36575108	24	2.0	23	84	11	62	62	10	10	16	1.53
36576921--36576974	29	1.9	29	85	7	76	35	9	0	55	1.32
36577029--36577083	23	2.5	23	82	5	69	38	7	1	52	1.40
36580654--36580699	21	2.3	21	85	7	60	80	13	6	0	0.89
36582444--36582630	50	3.7	50	69	2	142	32	24	20	23	1.98
36582371--36582744	100	3.7	99	84	1	426	31	21	20	25	1.98
36582765--36583795	45	22.7	45	73	13	505	29	17	23	29	1.97
36582764--36583163	90	4.4	90	87	2	570	29	17	23	30	1.97
36585146--36585224	38	2.1	37	86	6	106	26	30	17	25	1.97
36585343--36585539	47	4.1	47	86	2	268	27	30	9	32	1.89
36590457--36590520	33	1.9	33	90	0	101	32	25	17	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36590507--36590549	21	2.0	21	90	0	68	11	13	27	46	1.78
36590620--36590805	42	4.4	42	81	6	178	30	22	21	25	1.99
36590641--36590804	85	1.9	85	82	7	208	30	22	21	25	1.99
36596780--36597030	9	29.8	9	71	12	140	30	3	19	45	1.69
36596769--36596972	25	8.1	25	75	5	142	30	4	20	44	1.71
36596841--36597029	41	4.8	41	74	15	164	30	3	19	47	1.65
36596891--36596988	16	6.0	16	74	11	83	31	2	20	45	1.62
36596769--36596972	50	4.0	50	81	1	201	30	4	20	44	1.71
36596957--36597022	25	2.6	25	87	0	96	31	1	13	53	1.49
36597135--36597183	24	2.0	24	84	0	62	32	0	14	53	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228