genome.fa.s23.2.7.7.80.10.50.1000.225.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  225  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66542757--66542816	32	1.9	31	86	10	86	43	38	0	18	1.50
66542743--66542911	7	22.9	7	71	10	61	40	37	3	18	1.68
66542787--66542831	23	2.0	23	81	0	54	44	35	0	20	1.51
66542827--66542901	22	3.4	22	78	7	64	36	41	6	16	1.74
66542985--66543039	22	2.5	22	82	8	60	56	20	0	23	1.42
66545461--66545537	9	8.7	9	91	2	111	40	14	22	23	1.90
66564265--66564316	8	6.4	8	74	12	52	19	1	0	78	0.84
66564269--66564322	26	2.1	26	93	6	92	27	1	0	70	0.98
66564273--66564329	26	2.2	26	87	6	80	28	1	0	70	0.98
66567067--66567107	21	2.0	21	81	18	50	21	26	19	31	1.97
66574422--66574462	21	2.0	21	81	18	50	31	19	26	21	1.97
66584133--66584166	4	8.0	4	90	9	50	23	0	2	73	0.97
66584116--66584175	22	2.7	22	73	19	61	26	0	6	66	1.16
66586501--66586539	18	2.2	18	85	0	51	61	2	23	12	1.43
66587939--66587972	4	8.0	4	90	9	50	23	0	2	73	0.97
66587922--66587981	22	2.7	22	73	19	61	26	0	6	66	1.16
66591173--66591213	21	2.0	21	81	18	50	21	26	19	31	1.97
66596509--66596674	83	2.0	82	94	3	289	30	23	15	30	1.95
66598076--66598104	3	9.7	3	100	0	58	0	34	0	65	0.93
66602556--66602625	9	7.8	9	90	0	104	40	10	24	25	1.86
66607568--66607640	22	3.4	19	75	16	56	49	2	6	41	1.44
66609058--66609259	50	4.0	50	83	5	264	26	18	22	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66609058--66609242	100	1.9	100	91	2	309	24	19	22	34	1.97
66609034--66609243	100	2.1	100	87	1	305	25	19	22	32	1.97
66619679--66619791	56	2.0	56	100	0	226	38	22	12	26	1.89
66627319--66627836	189	2.7	189	92	0	840	30	19	19	30	1.97
66629085--66629122	3	12.7	3	94	0	67	28	0	0	71	0.87
66638542--66638598	18	3.2	18	89	0	87	31	15	24	28	1.96
66642446--66642490	9	5.0	9	88	0	72	35	17	24	22	1.95
66642446--66642490	18	2.5	18	96	0	81	35	17	24	22	1.95
66646134--66646188	21	2.6	21	82	0	74	27	9	34	29	1.87
66650570--66650597	8	3.5	8	100	0	56	35	39	0	25	1.56
66654917--66654970	27	2.0	27	82	7	65	27	7	0	64	1.20
66658339--66658368	15	2.0	15	100	0	60	26	13	33	26	1.93
66658975--66660166	426	2.8	426	81	7	1317	33	11	13	41	1.80
66669982--66670807	189	4.4	188	90	2	1214	31	19	18	29	1.96
66678298--66678388	46	2.0	46	93	0	155	38	9	19	31	1.85
66679295--66679332	16	2.4	16	90	0	58	18	18	21	42	1.90
66679616--66679663	23	2.1	23	84	3	62	25	4	27	43	1.72
66681820--66681869	17	2.7	20	78	18	70	10	0	44	46	1.37
66686459--66686508	17	2.7	20	78	18	70	10	0	44	46	1.37
66687491--66687516	2	13.0	2	100	0	52	50	0	0	50	1.00
66702140--66702653	141	3.7	141	87	6	704	33	8	22	35	1.84
66709062--66709088	4	6.8	4	100	0	54	25	0	0	74	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66709633--66709772	75	1.9	75	92	0	235	29	23	14	32	1.94
66720242--66720281	20	2.0	20	100	0	80	30	35	10	25	1.88
66720244--66720290	20	2.3	20	92	0	76	36	34	6	23	1.80
66722777--66722825	14	3.6	14	71	20	50	14	16	14	55	1.70
66722775--66722829	26	2.1	26	96	0	101	20	14	14	50	1.77
66723875--66723959	35	2.4	34	83	11	93	41	1	27	30	1.64
66724353--66724403	23	2.2	23	82	6	59	33	3	0	62	1.13
66724361--66724403	15	2.8	16	85	3	52	32	2	0	65	1.06
66724361--66724403	8	5.5	8	80	5	52	32	2	0	65	1.06
66724376--66724404	15	1.9	15	100	0	58	31	6	0	62	1.22
66728181--66728230	17	2.7	20	78	18	70	10	0	44	46	1.37
66732820--66732869	17	2.7	20	78	18	70	10	0	44	46	1.37
66733421--66733459	14	2.5	16	84	15	55	35	5	0	58	1.20
66735833--66735874	21	2.0	22	85	4	59	38	4	9	47	1.57
66736183--66736216	6	5.7	6	96	0	50	0	44	0	55	0.99
66739563--66740083	189	2.7	186	83	5	607	33	20	16	29	1.94
66753685--66754006	174	1.9	174	82	2	414	31	16	19	32	1.94
66759086--66759132	21	2.2	22	92	3	78	21	38	19	21	1.94
66764550--66764624	30	2.5	30	85	6	91	37	24	25	13	1.91
66775428--66775957	264	2.0	266	97	0	1001	33	18	25	23	1.97
66776080--66776261	61	3.0	61	89	4	285	41	19	4	34	1.72
66802621--66803152	266	2.0	266	97	0	1012	33	18	25	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66803275--66803458	62	3.0	62	90	0	296	41	19	4	34	1.71
66804709--66804767	12	5.1	11	79	8	55	77	13	5	3	1.05
66806124--66807313	132	9.0	132	93	1	1994	27	15	26	30	1.96
66807445--66807760	40	7.8	40	77	9	325	31	25	20	22	1.98
66807440--66807757	82	3.9	82	97	0	591	31	26	20	22	1.98
66812602--66812645	21	2.0	22	91	4	72	34	11	15	38	1.84
66818496--66818533	17	2.2	17	86	9	51	26	0	5	68	1.11
66821782--66821874	31	2.9	32	79	7	100	15	18	20	46	1.84
66834605--66834651	20	2.3	21	82	17	64	36	0	8	55	1.31
66838116--66838158	16	2.7	16	89	7	61	34	18	2	44	1.63
66847595--66847621	2	13.5	2	100	0	54	51	0	0	48	1.00
66859979--66860010	6	5.3	6	100	0	64	46	37	0	15	1.46
66879519--66879551	16	2.0	17	94	5	59	63	0	6	30	1.18
66886740--66886797	18	3.1	19	80	7	57	37	1	0	60	1.07
66893135--66893176	22	1.9	22	85	0	57	47	4	2	45	1.36
66896217--66896242	6	4.3	6	100	0	52	84	0	15	0	0.62
66899056--66899091	11	3.3	11	88	11	56	33	0	0	66	0.92
66914535--66914577	19	2.3	19	80	4	52	37	0	4	58	1.19
66921894--66922098	104	2.0	105	92	2	342	30	20	19	30	1.97
66926164--66926364	106	1.9	106	94	0	357	30	19	20	29	1.97
66928493--66928549	23	2.5	23	86	8	73	14	7	40	38	1.73
66939048--66939486	44	10.1	44	79	7	468	30	26	15	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66939048--66939485	174	2.5	174	80	6	462	30	26	15	27	1.96
66950788--66950987	106	1.9	105	94	1	355	30	19	20	29	1.97
66953104--66953160	23	2.5	23	86	8	73	14	7	40	38	1.73
66954788--66954821	16	2.1	17	88	5	52	41	2	0	55	1.15
66958360--66958425	31	2.1	31	88	5	98	36	7	12	43	1.70
66967568--66967603	15	2.4	15	90	0	54	58	0	5	36	1.22
66967811--66967859	26	1.9	26	84	12	66	67	8	6	18	1.37
66968429--66968477	21	2.3	21	92	0	80	57	8	22	12	1.61
66972888--66973073	73	2.5	73	97	0	354	40	24	6	28	1.79
66977319--66977504	73	2.5	73	97	0	354	40	24	6	28	1.79
66978886--66978925	21	1.9	21	89	0	62	12	17	15	55	1.70
66983792--66983822	13	2.4	13	94	0	53	64	12	9	12	1.50
66983918--66984146	112	2.0	112	97	0	431	38	22	13	24	1.91
66984924--66984991	33	2.1	33	100	0	136	42	11	23	22	1.86
66989603--66989650	21	2.2	22	85	10	64	75	8	2	14	1.13
66989688--66989764	27	2.9	27	96	0	136	28	23	35	12	1.92
66991062--66991096	11	3.2	11	88	11	54	0	54	0	45	0.99
66991563--66991630	3	22.3	3	73	8	57	30	0	7	61	1.23
66991570--66991641	23	3.1	23	82	11	67	31	1	11	55	1.43
66991735--66991773	3	13.0	3	88	0	60	30	2	0	66	1.05
66991978--66992109	64	2.1	64	83	11	164	37	4	2	56	1.33
66992040--66992099	20	3.0	18	76	21	57	35	5	1	58	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66992458--66992552	38	2.5	37	78	13	97	36	12	1	49	1.48
66994826--66994873	21	2.2	22	85	10	64	14	2	8	75	1.13
66997438--66997482	22	2.0	22	100	0	90	28	31	8	31	1.88
67007942--67008001	20	3.2	20	79	9	63	36	5	1	56	1.31
67007963--67008015	24	2.2	24	86	0	70	32	5	1	60	1.31
67011762--67011799	15	2.5	15	91	4	58	63	10	5	21	1.46
67028782--67028874	18	5.2	18	84	0	114	34	15	21	29	1.94
67028782--67028874	36	2.6	36	87	0	132	34	15	21	29	1.94
67047206--67047248	23	1.9	23	90	4	70	69	2	13	13	1.28
67047930--67047967	15	2.4	16	91	4	60	63	10	5	21	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228