genome.fa.s23.2.7.7.80.10.50.1000.210.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  210  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61387358--61387392	18	2.0	17	88	5	52	45	0	0	54	0.99
61387490--61387536	16	3.0	16	78	12	53	46	0	2	51	1.13
61387597--61387631	18	2.0	17	88	5	52	45	0	0	54	0.99
61387730--61387776	16	3.0	16	78	12	53	46	0	2	51	1.13
61388036--61388126	45	2.0	45	87	6	132	35	29	5	29	1.80
61391716--61391889	87	2.0	87	98	0	339	31	18	17	32	1.94
61392495--61392556	28	2.2	28	81	18	76	48	32	0	19	1.49
61392725--61392802	40	2.0	40	87	5	113	23	23	21	32	1.98
61392737--61392833	40	2.4	40	79	3	106	28	23	17	29	1.97
61392877--61392984	40	2.7	40	83	0	144	25	24	20	30	1.98
61393030--61393159	40	3.2	40	79	7	120	24	23	20	31	1.98
61392673--61393106	151	2.8	153	84	6	585	28	24	15	31	1.96
61393048--61393175	41	3.1	41	82	5	127	24	26	19	29	1.98
61396804--61396865	25	2.5	24	75	15	63	29	3	0	67	1.06
61399422--61399464	3	14.3	3	90	0	68	65	2	2	30	1.18
61401205--61401361	82	1.9	84	84	6	210	25	23	21	29	1.99
61401241--61401580	44	7.8	44	73	11	242	26	20	20	32	1.98
61401166--61401580	213	1.9	216	86	4	590	26	21	20	31	1.98
61423152--61423311	87	1.8	87	84	5	216	42	15	18	23	1.88
61432586--61432767	45	4.0	45	86	4	242	45	19	13	21	1.84
61432586--61432757	90	1.9	90	90	4	276	44	19	13	22	1.85
61434383--61434426	20	2.2	20	91	0	70	11	31	9	47	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61434804--61434835	16	2.0	16	93	0	55	9	21	43	25	1.82
61438411--61438455	20	2.2	20	84	7	56	44	11	6	37	1.66
61441123--61441150	12	2.3	12	100	0	56	53	7	14	25	1.66
61441152--61441197	21	2.2	21	84	7	58	54	4	6	34	1.46
61443478--61443518	20	2.0	20	86	9	57	43	2	2	51	1.28
61443517--61443552	19	1.9	19	88	5	56	38	2	8	50	1.47
61443699--61443738	14	2.7	15	80	11	55	42	12	10	35	1.76
61447267--61447303	17	2.2	17	90	4	58	27	0	0	72	0.84
61449968--61450056	31	2.9	31	70	6	81	46	17	2	33	1.61
61452507--61452562	29	1.9	29	88	0	85	33	1	7	57	1.37
61454468--61454501	12	2.9	12	91	4	52	61	8	5	23	1.47
61457919--61457951	15	2.2	15	100	0	66	45	12	6	36	1.66
61458885--61458975	19	4.5	21	69	25	63	41	3	0	54	1.16
61458878--61458990	30	3.4	31	76	22	122	37	3	0	59	1.15
61458885--61458927	11	3.8	12	79	14	56	41	4	0	53	1.21
61459926--61459977	16	3.2	16	97	0	95	26	0	34	38	1.57
61460213--61460247	18	2.0	17	88	5	52	54	0	0	45	0.99
61460993--61461022	13	2.3	13	100	0	60	60	13	6	20	1.55
61466618--61466669	6	8.7	6	100	0	104	0	0	67	32	0.91
61469206--61469231	7	3.7	7	100	0	52	53	0	0	46	1.00
61470628--61470693	31	2.1	31	88	5	98	19	21	15	43	1.87
61477814--61477848	16	2.2	16	94	0	61	45	40	0	14	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61480758--61480790	2	17.0	2	90	6	50	54	0	0	45	0.99
61480757--61480785	15	1.9	15	100	0	58	58	0	0	41	0.98
61484788--61484852	33	1.9	33	81	9	78	32	7	1	58	1.36
61496891--61496952	30	2.1	29	85	8	81	53	6	1	38	1.37
61499010--61499040	16	1.9	16	100	0	62	77	0	6	16	0.97
61513179--61513209	4	7.8	4	92	0	53	74	3	0	22	0.96
61514044--61514089	24	1.9	24	95	0	83	13	15	21	50	1.78
61514315--61514392	37	2.1	37	100	0	156	24	20	26	28	1.99
61517062--61517118	11	5.2	11	80	0	69	66	10	5	17	1.40
61517062--61517129	22	3.1	22	78	0	82	64	11	7	16	1.47
61518256--61518285	15	2.0	15	93	0	51	36	6	0	56	1.26
61518962--61519069	53	2.0	53	90	0	171	37	13	9	38	1.77
61524059--61524162	48	2.2	48	96	0	190	39	15	16	28	1.89
61534227--61534267	3	13.7	3	94	0	73	65	0	0	34	0.93
61538182--61538226	14	3.2	14	80	0	54	46	33	0	20	1.51
61539135--61539195	20	3.0	20	75	15	72	57	0	3	39	1.15
61541502--61541547	23	2.0	23	100	0	92	34	4	17	43	1.69
61541946--61542002	27	2.1	27	84	9	73	68	3	28	0	1.06
61542901--61542953	22	2.4	22	81	6	72	11	20	16	50	1.76
61546467--61546657	97	2.0	97	85	2	258	31	15	24	29	1.95
61547193--61547238	18	2.5	19	92	3	76	32	0	4	63	1.14
61548416--61548611	107	1.8	106	82	8	256	46	12	8	32	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61548716--61548749	5	7.0	5	90	3	52	44	0	0	55	0.99
61551817--61551982	45	3.7	45	75	7	167	28	17	18	35	1.93
61551785--61552029	44	5.5	44	72	11	169	29	16	18	35	1.93
61551781--61552026	89	2.8	89	83	4	284	29	17	18	35	1.93
61552009--61552120	50	2.2	51	84	4	138	31	24	16	28	1.96
61556408--61556469	31	2.0	31	96	0	115	29	20	12	37	1.90
61563184--61563484	46	6.3	48	83	8	357	35	13	22	28	1.93
61563118--61563473	98	3.6	98	96	0	631	34	14	22	28	1.93
61563448--61563556	37	3.0	37	90	2	177	35	16	22	24	1.95
61568123--61568186	32	2.0	32	96	0	119	48	9	14	28	1.74
61578090--61578118	9	3.2	9	100	0	58	58	0	0	41	0.98
61586448--61586487	18	2.2	19	86	4	55	40	5	2	52	1.37
61586524--61586568	21	2.2	20	84	11	56	60	6	0	33	1.23
61587917--61587942	4	6.5	4	100	0	52	76	0	0	23	0.78
61589644--61589683	19	2.2	18	86	4	53	15	5	22	57	1.57
61591375--61591479	55	1.9	55	98	0	201	42	19	7	30	1.78
61592779--61593102	156	2.1	156	85	0	441	30	19	12	37	1.89
61595123--61595279	59	2.8	56	89	5	251	47	14	8	30	1.73
61596884--61597338	243	1.9	228	81	6	523	45	6	10	38	1.64
61602362--61602428	34	1.9	35	90	3	109	34	8	10	46	1.70
61607339--61607369	9	3.4	9	95	0	53	64	9	16	9	1.48
61609722--61609877	41	3.8	41	81	0	177	27	16	26	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61609722--61609877	82	1.9	82	82	0	195	27	16	26	30	1.96
61609722--61609906	82	2.2	82	79	2	192	28	15	25	30	1.96
61610407--61610441	14	2.5	14	90	9	54	22	0	45	31	1.53
61610685--61610719	14	2.4	14	85	4	52	22	0	45	31	1.53
61610912--61610946	18	1.9	18	88	11	54	28	2	28	40	1.71
61619195--61619221	8	3.4	8	100	0	54	37	11	0	51	1.37
61633282--61633325	19	2.3	19	80	7	54	34	0	4	61	1.16
61634147--61634203	26	2.2	26	87	6	80	24	3	1	70	1.13
61634217--61634290	20	3.7	20	81	5	87	33	1	6	58	1.33
61634369--61634399	9	3.4	9	95	0	53	32	3	9	54	1.49
61641316--61641393	37	2.1	37	100	0	156	34	29	8	26	1.87
61641649--61641736	33	2.6	34	81	5	97	45	1	31	21	1.59
61641692--61641812	54	2.3	54	85	7	158	43	0	32	23	1.59
61642868--61642909	23	1.9	21	85	9	57	30	11	4	52	1.59
61649559--61649619	28	2.1	27	82	8	68	60	4	3	31	1.34
61649577--61649638	32	1.9	33	87	9	92	59	3	3	33	1.29
61649809--61649852	17	2.6	17	85	3	63	47	0	11	40	1.39
61649760--61649892	60	2.1	60	78	10	142	54	1	9	34	1.43
61649981--61650031	3	17.0	3	91	0	84	64	1	1	31	1.15
61651340--61651401	31	2.1	30	82	8	81	33	3	4	58	1.36
61652988--61653024	16	2.3	16	86	13	58	40	0	0	59	0.97
61653038--61653087	16	3.2	16	70	18	52	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61653019--61653084	29	2.2	30	86	10	91	57	0	0	42	0.98
61653028--61653105	29	2.9	26	78	17	79	56	0	1	42	1.07
61653131--61653162	13	2.4	14	85	15	50	43	0	0	56	0.99
61654900--61654954	29	2.0	27	86	13	76	27	3	0	69	1.05
61664031--61664096	9	7.2	9	86	10	89	39	28	10	21	1.86
61664031--61664096	20	3.6	18	80	11	89	39	28	10	21	1.86
61664066--61664108	11	4.2	11	85	14	65	46	27	6	18	1.75
61666435--61666468	16	2.1	16	89	10	52	32	2	0	64	1.08
61668906--61668966	31	2.0	31	96	0	113	14	24	27	32	1.95
61688556--61688596	21	2.0	21	90	0	64	19	29	21	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228