genome.fa.s23.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  118  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34907142--34907269	32	4.0	32	81	0	157	39	21	19	19	1.93
34907304--34907376	27	2.7	27	83	6	87	32	24	23	19	1.97
34907441--34907498	24	2.4	24	91	0	98	46	24	8	20	1.78
34907525--34907749	27	8.3	27	70	4	123	23	21	17	38	1.93
34907576--34907725	81	1.8	82	82	4	196	23	21	16	38	1.93
34907590--34907796	27	7.7	27	74	6	145	21	19	19	39	1.93
34911341--34911405	22	3.0	22	77	4	60	43	18	21	16	1.88
34911397--34911503	32	3.4	32	77	2	101	37	22	21	18	1.94
34911647--34911727	24	3.4	24	84	1	101	48	24	4	22	1.70
34911765--34911918	27	5.7	27	78	5	96	27	20	16	36	1.93
34911749--34912081	81	4.1	80	80	7	250	25	19	16	37	1.93
34911845--34912081	27	8.8	27	83	2	264	24	18	17	38	1.93
34916859--34916911	20	2.7	20	77	11	54	35	13	26	24	1.92
34919869--34920008	40	3.5	40	70	8	117	32	22	15	30	1.94
34920890--34920946	25	2.3	23	80	11	60	0	21	5	73	1.02
34927767--34927834	27	2.5	28	77	15	72	45	1	1	51	1.19
34929517--34929548	15	2.0	17	88	11	50	43	18	0	37	1.51
34931811--34931838	3	9.3	3	100	0	56	32	32	0	35	1.58
34935750--34935813	14	4.3	15	76	7	60	40	0	0	59	0.97
34935792--34935846	29	2.0	28	83	13	71	49	0	5	45	1.25
34935775--34935830	29	1.9	29	85	0	76	50	0	0	50	1.00
34937308--34937449	68	2.1	69	87	1	205	29	6	9	54	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34938338--34938387	16	2.9	17	77	8	57	6	14	4	76	1.13
34947061--34947147	23	3.8	23	96	0	165	42	5	28	22	1.77
34947849--34948654	404	2.0	401	90	1	1272	42	15	15	26	1.87
34948913--34948952	20	2.0	20	85	5	53	22	30	12	35	1.91
34950666--34950806	40	3.3	41	72	12	124	60	5	2	30	1.34
34950713--34950776	33	1.9	33	87	6	94	64	6	1	28	1.27
34950944--34950996	20	2.7	21	82	8	58	32	0	5	62	1.19
34950932--34950981	19	2.7	19	75	6	50	36	0	4	60	1.16
34958744--34960130	132	10.5	132	91	1	2000	28	25	19	27	1.98
34958936--34959267	44	7.6	43	64	13	113	28	24	18	28	1.98
34966811--34966846	8	4.4	8	86	6	54	88	0	0	11	0.50
34966812--34966838	14	1.9	14	100	0	54	88	0	0	11	0.50
34972887--34972931	19	2.4	19	85	7	56	33	2	2	62	1.20
34976679--34976709	13	2.4	13	88	0	53	38	45	12	3	1.59
34976767--34976810	13	3.4	13	87	0	61	20	31	34	13	1.92
34977377--34977411	11	3.1	11	91	4	52	82	8	8	0	0.83
34978766--34978795	3	10.0	3	100	0	60	33	33	0	33	1.58
34986871--34986920	21	2.4	21	83	3	57	38	0	20	42	1.52
34995560--34995592	14	2.3	15	94	5	59	39	0	0	60	0.97
34999449--34999479	15	2.1	15	94	5	55	35	0	25	38	1.56
35001574--35001629	28	2.0	28	92	0	94	35	10	25	28	1.89
35004418--35004483	26	2.5	27	85	5	107	28	34	15	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35004528--35004684	74	2.1	74	97	0	296	29	22	12	34	1.92
35005337--35005410	38	1.9	38	94	0	130	43	18	10	27	1.83
35012698--35012726	12	2.3	13	94	5	51	65	6	6	20	1.40
35014988--35015023	18	2.0	18	100	0	72	38	16	16	27	1.90
35016850--35016890	13	3.2	13	83	10	57	75	0	0	24	0.80
35020528--35020577	21	2.4	21	79	0	55	18	18	18	46	1.85
35020464--35020698	118	2.0	118	94	0	416	22	19	14	44	1.86
35020646--35020733	21	4.2	21	83	0	113	17	20	19	43	1.88
35020650--35020747	42	2.4	41	89	5	153	15	19	19	45	1.85
35026675--35026713	20	2.0	20	94	0	69	48	0	2	48	1.15
35026801--35026864	34	1.9	32	81	12	76	43	10	4	40	1.61
35026813--35026853	20	2.1	20	90	4	66	46	12	2	39	1.54
35033207--35033247	21	1.9	22	85	5	57	43	4	19	31	1.72
35033536--35033560	12	2.1	12	100	0	50	36	8	0	56	1.29
35035462--35035891	212	2.0	212	96	0	797	30	14	18	36	1.91
35040316--35040349	3	11.3	3	100	0	68	32	35	0	32	1.58
35044663--35044723	32	1.9	31	93	3	104	39	4	18	37	1.72
35045072--35045122	20	2.5	20	90	6	77	29	11	17	41	1.85
35048203--35048245	20	2.2	20	91	0	68	60	9	9	20	1.55
35048781--35048917	54	2.5	54	86	2	195	24	32	19	23	1.97
35053749--35054061	40	7.8	40	91	1	473	24	29	21	24	1.99
35053749--35054061	162	1.9	160	88	1	473	24	29	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35062078--35062209	35	3.6	35	73	13	104	36	24	20	18	1.95
35062121--35062249	40	3.4	38	75	15	131	41	20	17	20	1.91
35062066--35062352	75	3.8	74	84	3	326	36	23	19	19	1.95
35063237--35063290	28	1.9	28	100	0	108	27	25	11	35	1.90
35063546--35063570	7	3.6	7	100	0	50	24	0	0	76	0.80
35070961--35071116	50	3.1	50	84	0	204	42	19	9	28	1.82
35080845--35080896	18	2.7	19	85	5	61	55	3	1	38	1.29
35081293--35081380	20	5.2	17	70	17	58	44	1	2	52	1.21
35081338--35081386	25	2.0	25	84	8	64	42	4	0	53	1.20
35091332--35091392	25	2.4	26	78	15	65	40	3	4	50	1.40
35091915--35092000	44	2.0	44	84	10	117	65	0	1	33	1.01
35093225--35093292	27	2.5	27	78	0	73	20	27	17	33	1.95
35095567--35095626	25	2.4	25	97	0	111	28	10	21	40	1.85
35097433--35097460	9	3.1	9	100	0	56	57	10	0	32	1.33
35097403--35097680	68	4.1	68	96	0	497	44	8	5	40	1.59
35097669--35097710	16	2.6	16	88	0	57	42	4	0	52	1.22
35099455--35099520	29	2.4	28	80	7	71	24	6	4	65	1.35
35100853--35100904	25	2.0	25	85	10	70	17	1	26	53	1.54
35100983--35101029	18	2.7	17	78	12	51	17	4	21	57	1.56
35105173--35105210	17	2.3	17	86	4	51	28	13	2	55	1.51
35108176--35108367	77	2.5	76	87	3	260	33	17	13	36	1.88
35108411--35108566	84	1.9	84	84	0	213	31	12	9	46	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35120273--35120371	39	2.5	39	81	0	126	43	22	6	28	1.77
35124816--35125001	50	3.7	48	72	14	153	24	17	26	31	1.97
35124811--35124994	101	1.8	101	85	4	264	24	17	26	31	1.97
35125220--35125251	16	2.0	16	93	0	55	59	0	15	25	1.36
35130470--35130656	50	3.7	49	73	13	175	25	17	25	31	1.97
35130465--35130648	101	1.8	101	88	4	282	25	17	25	31	1.97
35130874--35130905	16	2.0	16	93	0	55	59	0	15	25	1.36
35133413--35133466	3	18.0	3	100	0	108	33	33	0	33	1.58
35153313--35153409	17	5.6	17	67	24	51	50	5	3	41	1.40
35153374--35153409	17	2.1	17	89	5	54	44	5	5	44	1.50
35158693--35158771	37	2.1	37	90	0	122	25	31	18	24	1.98
35158888--35159180	47	6.2	47	91	2	462	29	31	8	31	1.86
35158888--35159180	95	3.1	94	91	3	462	29	31	8	31	1.86
35162504--35162619	40	2.9	40	85	0	133	25	30	21	23	1.99
35162520--35162781	40	6.6	40	80	8	225	24	28	20	26	1.99
35162530--35162781	80	3.2	78	80	9	251	24	28	20	26	1.99
35163068--35163146	29	2.7	29	86	5	106	27	32	15	24	1.95
35163128--35163302	43	4.1	43	94	0	296	25	36	16	21	1.94
35163128--35163559	129	3.5	129	88	9	705	26	35	16	22	1.95
35163263--35163330	28	2.4	28	95	0	118	27	33	14	23	1.94
35163220--35163366	71	2.1	71	97	0	276	27	34	16	21	1.95
35163177--35163416	114	2.1	114	98	0	462	26	34	16	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35163291--35163559	43	6.3	43	96	0	493	26	34	15	22	1.95
35165424--35165502	37	2.1	37	90	0	122	25	31	18	24	1.98
35165620--35165913	47	6.2	47	90	2	453	29	30	8	31	1.86
35165620--35165913	95	3.1	94	90	2	453	29	30	8	31	1.86
35171175--35171359	79	2.3	81	83	7	227	24	22	27	24	2.00
35171176--35171359	40	4.6	40	82	9	207	25	22	27	24	2.00
35171228--35171392	79	2.1	79	83	6	201	26	21	27	24	1.99
35179252--35179435	79	2.3	81	81	7	216	25	22	27	25	2.00
35179251--35179435	40	4.7	40	82	6	216	24	22	27	25	2.00
35179303--35179468	79	2.1	78	79	9	176	27	21	26	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228