genome.fa.s23.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  145  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43698587--43698665	21	3.8	19	80	12	77	39	16	7	36	1.77
43698621--43698664	21	2.1	21	100	0	88	38	13	9	38	1.77
43700325--43700664	43	7.9	43	93	0	554	30	27	20	22	1.98
43700979--43701033	21	2.6	21	88	0	74	5	43	16	34	1.71
43701080--43701120	21	2.0	21	85	0	55	9	41	12	36	1.76
43701015--43701180	87	1.9	87	88	4	255	13	30	16	40	1.86
43706707--43706748	16	2.7	15	85	7	66	40	0	14	45	1.45
43706849--43707223	16	23.9	17	67	22	111	38	2	13	45	1.57
43706848--43707006	50	3.3	50	72	18	174	37	3	13	45	1.61
43706868--43707080	43	5.1	41	67	16	109	38	2	12	46	1.57
43706792--43707007	93	2.3	93	93	1	364	39	3	13	43	1.60
43706873--43707131	124	2.1	124	94	1	448	38	2	13	45	1.57
43706773--43707224	217	2.1	215	92	3	746	38	2	13	45	1.57
43706990--43707264	93	3.0	93	92	3	477	39	1	12	46	1.53
43707035--43707194	53	3.3	53	70	21	184	38	2	12	46	1.55
43707085--43707140	9	6.8	9	71	19	50	37	0	16	46	1.47
43706848--43707224	31	12.1	30	68	24	189	38	2	12	45	1.57
43707879--43707914	15	2.5	15	90	4	56	63	8	16	11	1.49
43709734--43709783	24	2.1	24	85	7	66	28	4	0	68	1.08
43710775--43710945	73	2.3	73	92	1	279	35	20	16	26	1.94
43712022--43712218	82	2.4	81	80	9	195	28	25	26	19	1.99
43712022--43712239	41	5.3	41	74	13	164	29	25	25	19	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43712088--43712239	82	1.9	82	82	8	193	31	25	25	17	1.97
43712343--43712433	41	2.2	40	86	7	121	15	24	24	36	1.94
43712425--43712449	12	2.1	12	100	0	50	32	36	24	8	1.84
43712662--43712725	33	1.9	33	100	0	128	40	9	15	34	1.80
43714844--43714904	11	5.5	11	70	18	54	45	11	3	39	1.57
43716977--43717016	7	5.7	7	84	0	53	47	32	0	20	1.50
43716984--43717023	21	1.9	21	94	0	71	50	32	0	17	1.47
43717837--43718211	185	2.0	185	96	0	687	17	29	5	47	1.71
43722221--43722338	42	2.8	42	92	0	191	33	23	21	21	1.97
43722312--43722526	42	5.1	41	86	7	281	21	22	21	34	1.97
43722312--43722526	83	2.6	83	87	3	306	21	22	21	34	1.97
43724331--43724385	28	2.0	28	92	0	92	32	5	7	54	1.51
43725857--43725900	23	1.9	23	81	9	54	54	9	2	34	1.44
43725158--43726092	391	2.4	390	88	5	1349	41	23	4	30	1.74
43726628--43726891	113	2.3	114	88	2	379	31	29	18	20	1.96
43726779--43726976	95	2.1	95	91	0	315	33	26	16	24	1.96
43733522--43733942	140	3.0	140	92	0	707	36	25	17	20	1.94
43736599--43736633	15	2.4	15	90	4	54	48	0	8	42	1.33
43740542--43740600	23	2.6	23	87	10	86	44	18	3	33	1.67
43742565--43742610	20	2.3	20	82	10	58	54	8	6	30	1.56
43750089--43750118	16	1.9	16	93	6	53	50	20	0	30	1.49
43757560--43757824	40	6.7	40	84	5	277	25	27	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43761573--43761661	45	2.0	45	93	0	151	33	24	16	24	1.96
43761672--43761807	50	2.7	52	83	5	179	30	27	16	25	1.96
43764343--43764503	41	3.9	40	79	6	162	26	25	19	28	1.99
43771653--43771711	30	2.0	30	100	0	118	44	20	10	25	1.83
43771927--43772087	41	3.9	40	79	6	144	25	24	20	29	1.99
43775431--43775464	15	2.3	15	89	0	50	29	17	5	47	1.71
43776549--43776595	13	3.6	13	80	11	60	63	4	0	31	1.13
43776851--43776894	20	2.2	20	84	8	54	54	6	6	31	1.53
43781167--43781208	21	2.0	21	86	9	59	21	7	21	50	1.72
43784114--43784157	22	2.0	22	86	0	61	27	25	20	27	1.99
43785540--43785598	20	3.0	20	77	5	66	44	22	5	28	1.74
43785787--43785861	23	3.2	24	79	3	75	36	17	26	20	1.94
43792880--43792926	14	3.3	14	77	16	60	46	14	4	34	1.64
43793004--43793054	20	2.6	19	81	9	66	43	19	3	33	1.70
43793231--43793311	23	3.5	23	75	9	76	37	18	23	20	1.94
43793608--43793945	125	2.7	125	88	1	516	29	21	20	28	1.98
43793801--43794436	166	3.9	163	80	8	699	34	19	19	26	1.96
43794539--43794614	40	1.9	39	84	7	100	26	25	15	32	1.95
43795057--43795099	13	3.2	13	77	6	50	16	2	27	53	1.55
43795121--43795180	22	2.8	22	78	12	70	18	6	43	31	1.76
43795178--43795229	7	7.1	7	77	14	52	30	1	28	38	1.68
43799304--43799353	21	2.4	21	93	0	82	34	18	46	2	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43799708--43799943	43	5.4	42	83	9	265	30	16	27	25	1.97
43799810--43799908	49	2.0	49	96	0	180	28	15	29	27	1.96
43799767--43799944	92	1.9	93	90	2	288	27	15	29	28	1.96
43799862--43799960	43	2.3	42	85	1	117	27	17	28	27	1.97
43801486--43801548	30	2.1	30	82	5	74	28	19	23	28	1.98
43801441--43801591	66	2.3	66	87	0	221	27	17	25	29	1.98
43801454--43801587	36	3.9	35	72	16	127	26	17	25	29	1.98
43812546--43812611	22	3.0	22	86	0	78	19	19	33	27	1.96
43812653--43812783	27	4.9	27	71	5	88	34	13	25	25	1.93
43818328--43818439	42	2.7	42	81	2	118	30	15	22	32	1.94
43826765--43826831	30	2.2	30	94	5	118	20	22	34	22	1.97
43830793--43830869	6	13.5	6	73	13	65	76	3	2	16	1.05
43830768--43830824	14	3.9	15	75	13	57	75	7	0	17	1.02
43830761--43830829	27	2.5	27	81	11	79	73	5	0	20	1.03
43830768--43830870	40	2.5	41	76	10	104	73	4	1	19	1.11
43830793--43830869	24	3.4	22	79	13	86	76	3	2	16	1.05
43830793--43830870	16	4.6	16	77	15	77	75	3	2	17	1.07
43830767--43830869	12	8.7	11	68	21	66	74	4	1	18	1.09
43830817--43830875	17	3.5	17	88	6	68	72	1	5	20	1.12
43831324--43831366	22	2.0	22	86	4	61	13	9	6	69	1.35
43834519--43834630	33	3.4	33	83	2	136	48	15	19	16	1.82
43834519--43834649	33	4.0	33	79	9	133	48	16	18	17	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43834519--43834649	66	2.0	65	83	5	165	48	16	18	17	1.82
43834543--43834691	66	2.3	65	80	6	149	48	15	18	17	1.82
43842763--43842824	30	2.1	29	82	8	72	25	25	14	33	1.94
43842760--43843157	29	13.5	29	76	6	232	24	25	12	37	1.91
43842853--43843107	87	2.9	87	79	8	293	24	26	12	36	1.91
43862023--43862156	72	1.9	70	86	6	191	42	2	4	50	1.38
43863793--43863820	4	7.0	4	100	0	56	75	0	0	25	0.81
43865174--43865226	23	2.4	22	76	20	56	9	18	1	69	1.25
43876151--43876452	43	6.9	43	82	7	365	25	27	17	30	1.97
43876151--43876452	86	3.4	86	87	2	415	25	27	17	30	1.97
43876826--43877062	9	27.7	9	66	19	80	30	2	16	49	1.59
43876854--43877150	16	18.1	16	66	21	93	30	2	17	49	1.59
43876869--43876975	25	4.2	25	79	11	126	30	1	16	50	1.56
43876947--43877034	34	2.6	36	76	10	103	30	2	14	52	1.54
43877133--43877176	23	1.9	23	90	9	72	29	0	22	47	1.51
43877187--43877240	17	3.1	18	74	17	60	59	3	0	37	1.15
43877421--43877560	21	6.5	21	75	16	101	51	1	0	46	1.15
43877427--43877494	31	2.2	30	80	12	84	52	0	1	45	1.09
43878689--43878729	19	2.2	19	95	0	73	41	9	4	43	1.59
43879535--43879567	14	2.4	14	100	0	66	21	36	6	36	1.78
43879800--43879857	28	2.1	28	96	0	107	34	25	6	32	1.83
43880037--43880078	18	2.2	20	87	8	61	2	30	9	57	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43880753--43880828	39	1.9	40	83	5	100	32	19	14	32	1.92
43888312--43888348	17	2.1	18	90	5	58	29	0	2	67	1.04
43896633--43896682	24	2.2	23	89	7	75	36	6	32	26	1.81
43901732--43901774	19	2.4	18	84	7	52	53	0	0	46	1.00
43902695--43902724	14	2.1	14	93	0	51	43	0	0	56	0.99
43911507--43911830	55	5.9	55	84	1	409	28	16	26	28	1.97
43911511--43911847	110	3.1	110	85	4	450	27	16	27	28	1.97
43913946--43914002	30	1.9	30	82	7	71	52	3	7	36	1.46
43917338--43917372	4	9.0	4	87	6	54	22	0	0	77	0.78
43921929--43921978	25	2.1	23	85	14	66	48	0	2	50	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228