genome.fa.s23.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  129  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38438585--38438762	27	6.6	27	83	1	140	25	17	29	27	1.97
38438578--38438762	82	2.3	81	76	0	199	25	17	28	28	1.97
38446626--38446776	82	1.9	81	85	1	212	26	18	28	26	1.98
38446626--38446781	27	5.7	27	85	1	168	26	17	28	26	1.98
38446625--38446802	27	6.6	27	83	1	140	25	17	29	27	1.97
38446618--38446802	82	2.3	81	76	0	199	25	17	28	28	1.97
38458246--38458286	20	2.0	20	85	0	55	26	17	17	39	1.91
38461446--38461493	25	2.0	24	83	4	60	18	25	18	37	1.94
38463110--38463199	25	3.6	25	77	3	92	30	21	22	26	1.99
38467948--38468067	60	2.0	60	88	3	179	31	24	19	25	1.98
38472368--38472428	28	2.2	28	93	0	104	45	19	8	26	1.78
38472375--38472430	28	2.0	28	100	0	112	42	17	10	28	1.83
38472951--38473183	98	2.3	102	83	7	269	21	27	24	27	1.99
38472889--38473183	50	5.8	50	81	4	299	22	26	23	27	1.99
38474387--38476670	722	3.2	702	88	4	3187	25	20	17	36	1.94
38481785--38482492	140	5.1	140	95	0	1249	45	5	8	40	1.59
38482468--38482614	75	2.0	75	86	4	208	29	15	9	44	1.78
38483433--38483644	43	4.9	43	75	5	121	44	18	14	21	1.86
38483455--38483697	129	1.9	129	85	3	337	41	21	16	20	1.89
38483491--38483688	43	4.6	43	74	3	148	40	22	15	21	1.90
38486413--38486545	50	2.7	50	83	0	185	20	27	23	29	1.99
38489421--38489452	12	2.7	12	100	0	64	43	6	0	50	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38495248--38495439	50	3.9	50	75	1	127	21	28	20	29	1.98
38497314--38497364	16	3.2	15	81	10	57	43	3	25	27	1.72
38499066--38499099	17	2.0	17	100	0	68	64	11	0	23	1.26
38512435--38512480	18	2.8	18	84	15	64	0	30	41	28	1.56
38513286--38513357	18	3.7	18	71	20	54	29	4	41	25	1.74
38514253--38514295	13	3.1	14	84	12	54	60	0	0	39	0.97
38517876--38517910	16	2.2	16	100	0	70	31	17	5	45	1.71
38522999--38523234	30	7.8	31	68	12	102	36	13	26	24	1.92
38523000--38523265	89	3.0	90	85	4	342	36	13	27	22	1.92
38523123--38523250	30	4.3	30	76	9	136	36	14	26	21	1.93
38525043--38525102	22	2.7	23	73	19	63	66	6	0	26	1.16
38525052--38525085	4	8.0	4	90	9	50	73	2	0	23	0.97
38526440--38526491	23	2.3	22	75	21	54	9	23	1	65	1.32
38528853--38528912	22	2.7	23	73	19	63	66	6	0	26	1.16
38528862--38528895	4	8.0	4	90	9	50	73	2	0	23	0.97
38530250--38530301	23	2.3	22	75	21	54	9	23	1	65	1.32
38532662--38532721	22	2.7	23	73	19	63	66	6	0	26	1.16
38532671--38532704	4	8.0	4	90	9	50	73	2	0	23	0.97
38536113--38536166	25	2.2	24	83	12	65	50	16	3	29	1.63
38544762--38544840	41	1.9	41	100	0	158	36	16	20	26	1.93
38547244--38547341	20	4.9	20	66	5	63	13	26	20	39	1.89
38560075--38560130	28	2.0	28	100	0	112	17	17	28	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38587346--38587381	18	1.9	19	88	5	56	55	0	11	33	1.35
38591955--38592190	50	4.6	50	81	3	229	22	28	20	27	1.99
38597904--38598098	50	3.9	50	84	1	239	22	29	22	26	1.99
38597904--38598097	99	2.0	100	83	1	246	22	29	22	26	1.99
38599619--38599694	37	2.1	37	89	0	116	26	32	18	22	1.97
38599815--38600407	47	12.6	47	94	1	999	29	30	8	31	1.86
38603732--38603998	40	6.7	40	77	10	165	24	28	20	26	1.99
38603746--38604006	80	3.3	80	80	8	230	25	28	19	26	1.99
38603829--38604006	80	2.2	80	86	2	259	24	28	19	27	1.99
38604350--38604428	29	2.7	29	86	5	106	27	32	15	24	1.95
38604410--38604556	43	3.4	43	97	1	278	26	35	14	23	1.94
38604541--38604613	28	2.6	29	84	2	94	26	31	16	26	1.96
38604453--38604839	142	2.7	143	97	1	742	26	33	14	24	1.95
38604681--38604755	28	2.6	28	89	2	105	25	33	16	25	1.95
38604737--38604839	43	2.4	43	100	0	206	26	35	15	22	1.94
38606683--38606758	37	2.1	37	89	0	116	26	32	18	22	1.97
38606878--38607360	47	10.3	47	92	2	785	29	30	8	31	1.87
38610693--38610959	40	6.7	40	77	10	165	24	28	20	26	1.99
38610707--38610967	80	3.3	80	80	8	230	25	28	19	26	1.99
38610790--38610967	80	2.2	80	86	2	259	24	28	19	27	1.99
38611312--38611390	29	2.7	29	86	5	106	27	32	15	24	1.95
38611504--38611575	28	2.6	28	84	8	94	25	30	16	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38611372--38611519	43	3.4	43	99	0	287	27	35	14	22	1.94
38611415--38611803	142	2.7	144	97	1	746	26	33	14	25	1.95
38611559--38611661	43	2.4	43	98	0	197	27	34	14	23	1.94
38611317--38611661	185	1.9	187	97	1	658	26	32	14	25	1.95
38611460--38611640	99	1.8	97	88	7	274	27	32	14	25	1.94
38611644--38611719	29	2.6	29	89	4	109	25	32	15	26	1.95
38611701--38611803	43	2.4	43	100	0	206	26	35	15	22	1.94
38613657--38613732	37	2.1	37	89	0	116	26	32	18	22	1.97
38613853--38614385	47	11.3	47	92	1	870	29	30	8	31	1.87
38614212--38614286	22	3.3	22	63	7	60	28	30	10	30	1.90
38620761--38620952	50	3.8	50	85	0	267	20	30	22	27	1.98
38622701--38622869	27	6.3	27	86	4	198	43	20	15	20	1.88
38622701--38622869	81	2.1	81	84	4	225	43	20	15	20	1.88
38623036--38623110	26	2.9	26	87	0	114	14	20	29	36	1.92
38626394--38626679	50	5.7	50	82	3	310	20	28	23	26	1.99
38630123--38630155	16	2.0	17	94	5	59	30	33	0	36	1.58
38635042--38635140	25	4.0	25	77	7	94	33	20	22	24	1.97
38637394--38637826	27	16.7	27	73	9	244	38	20	18	21	1.93
38637416--38637616	102	2.0	103	87	1	296	37	20	18	22	1.94
38637584--38637628	22	2.0	22	100	0	90	26	26	22	24	2.00
38637635--38637877	81	3.0	81	81	2	249	41	20	16	20	1.89
38637713--38637877	27	6.2	26	81	5	152	43	21	13	21	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38637724--38637894	79	2.1	80	83	4	211	43	21	14	21	1.87
38638201--38638317	28	4.2	28	87	0	171	23	22	21	32	1.98
38645616--38645640	12	2.1	12	100	0	50	36	0	24	40	1.55
38651369--38651600	27	8.6	27	82	5	227	20	16	22	39	1.92
38651367--38651600	54	4.3	54	82	7	260	20	16	22	39	1.92
38651391--38651600	81	2.6	81	84	3	271	20	17	22	40	1.92
38652211--38652253	12	3.6	12	75	12	52	23	44	0	32	1.54
38652761--38652805	21	2.1	22	83	4	56	53	0	6	40	1.27
38656128--38656166	19	2.1	19	85	0	51	51	5	12	30	1.62
38657449--38657486	18	2.1	18	90	0	58	42	21	15	21	1.89
38657816--38657891	9	8.4	9	89	0	98	25	7	23	43	1.80
38657824--38657891	27	2.5	27	90	0	109	25	8	23	42	1.82
38658023--38658047	12	2.1	12	100	0	50	16	24	36	24	1.94
38663954--38663990	19	1.9	19	94	0	65	21	29	2	45	1.65
38663951--38663997	19	2.5	19	80	13	60	21	29	2	46	1.63
38691127--38691208	39	2.1	39	97	0	155	35	13	24	26	1.92
38693303--38693409	33	3.3	34	65	22	95	35	14	21	28	1.93
38693298--38693425	63	2.0	63	100	0	256	37	15	20	26	1.92
38694703--38694729	5	5.4	5	100	0	54	40	18	18	22	1.91
38695095--38695136	17	2.3	18	80	8	50	71	7	4	16	1.26
38704191--38704413	40	5.6	40	85	3	236	26	27	21	24	1.99
38704345--38704422	40	1.9	41	82	10	97	26	28	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38712092--38712314	40	5.6	40	85	3	236	26	27	21	24	1.99
38712246--38712323	40	1.9	41	82	10	97	26	28	21	23	1.99
38713831--38713889	29	2.0	29	93	0	100	49	0	11	38	1.40
38713895--38713931	9	4.1	9	89	0	56	29	8	13	48	1.71
38719903--38720149	50	4.8	50	81	5	239	27	21	27	22	1.99
38723404--38723440	17	2.2	17	90	0	56	24	10	16	48	1.77
38731847--38731988	47	2.9	49	78	12	164	35	22	16	24	1.95
38739375--38739601	75	3.0	74	82	5	242	34	19	21	24	1.96
38739375--38739658	75	3.8	75	80	5	229	34	17	22	25	1.96
38741197--38741303	50	2.1	50	84	0	142	21	31	22	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228