genome.fa.s23.2.7.7.80.10.50.1000.196.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  196  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57764846--57764886	21	2.0	21	85	9	57	41	2	2	53	1.27
57765865--57765914	25	2.0	26	88	4	75	40	0	6	54	1.25
57767996--57768037	7	6.0	7	97	0	66	38	47	0	14	1.44
57769624--57769682	27	2.1	28	87	3	84	33	6	0	59	1.24
57769695--57769758	29	2.2	28	86	8	85	42	7	0	50	1.31
57769686--57769768	29	2.8	29	75	12	80	39	8	0	51	1.32
57769744--57769787	23	1.9	23	81	9	54	27	6	2	63	1.31
57771055--57771084	13	2.3	13	94	0	51	33	3	13	50	1.58
57771179--57771471	50	5.8	50	93	0	478	25	22	31	20	1.98
57773536--57773581	20	2.3	20	85	7	58	28	17	28	26	1.98
57773545--57773582	20	1.9	20	89	10	60	23	18	31	26	1.97
57781081--57781137	30	1.9	30	86	10	82	40	7	24	28	1.81
57781351--57781380	13	2.3	13	94	0	51	33	3	13	50	1.58
57781475--57781767	50	5.8	50	93	0	487	25	22	31	20	1.98
57783936--57783993	22	2.7	21	76	7	55	46	22	3	27	1.68
57784198--57784301	40	2.6	40	84	3	120	27	22	20	29	1.98
57784211--57784305	40	2.4	40	87	0	127	32	21	17	28	1.96
57789193--57789232	21	1.9	21	94	0	71	27	20	30	22	1.98
57789707--57789836	6	20.7	6	77	9	98	22	7	13	56	1.61
57790307--57790336	15	2.0	15	93	0	51	20	6	30	43	1.77
57793794--57793858	28	2.3	29	75	19	66	55	7	3	33	1.44
57793888--57793934	3	15.3	3	82	4	58	61	4	2	31	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57795108--57795143	17	2.1	17	90	10	56	5	5	44	44	1.50
57795605--57796541	46	20.4	46	91	1	1421	29	26	16	27	1.97
57797621--57797667	21	2.2	21	88	0	67	25	34	10	29	1.90
57797761--57797792	8	4.1	8	92	8	57	12	12	0	75	1.06
57797752--57797792	15	2.7	15	85	10	57	14	14	0	70	1.16
57798593--57798631	21	1.9	20	89	5	60	7	0	5	87	0.68
57799651--57799694	23	1.9	23	95	0	79	27	4	25	43	1.74
57802788--57802830	6	6.8	6	81	7	50	41	16	20	20	1.90
57802814--57802993	45	4.0	45	90	1	254	40	20	18	21	1.91
57806849--57806876	13	2.2	13	100	0	56	60	7	0	32	1.24
57807015--57807044	12	2.5	12	94	0	51	66	0	0	33	0.92
57807063--57807092	3	10.0	3	92	0	51	66	3	0	30	1.07
57808356--57808419	28	2.3	28	83	0	74	12	32	15	39	1.85
57808796--57808984	100	1.9	100	81	4	229	25	21	21	31	1.98
57808989--57809577	44	13.4	44	68	10	308	28	24	17	29	1.98
57808989--57809927	132	7.1	132	93	0	1439	28	24	18	28	1.98
57808989--57809842	88	9.7	88	67	9	344	28	24	18	28	1.98
57809674--57809858	44	4.2	44	64	13	110	29	22	20	27	1.99
57810045--57810139	44	2.2	44	79	9	104	24	29	17	28	1.97
57810934--57810967	4	8.0	4	90	9	50	23	0	2	73	0.97
57810917--57810976	22	2.7	22	73	19	61	26	0	6	66	1.16
57813266--57813345	18	4.5	18	70	16	51	63	1	25	10	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57814745--57814778	4	8.0	4	90	9	50	23	0	2	73	0.97
57814728--57814787	22	2.7	22	73	19	61	26	0	6	66	1.16
57815979--57816090	42	2.6	42	91	1	170	25	26	16	31	1.96
57816172--57816207	16	2.3	16	85	4	56	0	13	0	86	0.58
57821362--57821389	13	2.2	13	100	0	56	60	7	0	32	1.24
57821522--57821562	21	2.0	21	85	0	55	63	0	2	34	1.08
57822576--57822606	15	2.1	15	93	0	53	12	9	45	32	1.75
57823705--57823748	17	2.6	17	85	0	61	27	13	13	45	1.81
57825660--57825707	20	2.4	20	92	0	78	33	4	0	62	1.14
57827255--57827294	3	13.3	3	100	0	80	67	0	0	32	0.91
57828245--57828292	24	2.0	25	84	12	64	14	31	2	52	1.54
57832260--57832395	66	2.1	66	91	2	220	28	27	14	29	1.95
57838402--57838452	25	2.0	25	85	7	68	37	0	9	52	1.34
57840546--57840670	29	4.2	29	75	13	96	38	3	1	56	1.25
57840585--57840642	19	3.0	19	74	2	62	43	0	1	55	1.10
57848953--57849086	65	2.1	65	97	0	250	34	22	13	29	1.92
57850674--57850735	30	2.1	29	93	3	106	40	29	17	12	1.87
57858027--57858401	93	4.0	93	87	4	499	26	25	15	32	1.96
57860155--57860198	23	1.9	23	86	9	63	34	2	0	63	1.07
57871355--57871386	15	2.1	16	88	11	50	46	0	0	53	1.00
57876197--57876244	22	2.2	22	96	0	87	54	4	20	20	1.61
57883615--57883652	20	1.9	20	94	0	67	55	13	0	31	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57885648--57885693	22	2.1	22	91	0	74	13	17	13	56	1.67
57885724--57885789	23	2.9	23	68	11	64	63	10	16	9	1.50
57902796--57902840	21	2.1	23	88	12	69	46	0	4	48	1.22
57902981--57903028	22	2.1	23	88	3	71	43	0	33	22	1.54
57904216--57904271	25	2.2	25	77	3	58	35	12	5	46	1.65
57911500--57911557	25	2.3	26	78	3	64	67	5	5	22	1.31
57915457--57915489	17	1.9	18	88	11	52	45	0	12	42	1.41
57916796--57916851	29	1.9	29	85	7	78	42	19	14	23	1.88
57918251--57918300	20	2.5	20	87	9	66	28	2	4	66	1.21
57920358--57920409	24	2.2	24	92	0	86	34	1	7	55	1.39
57921438--57921487	27	1.9	27	84	8	68	60	10	14	16	1.59
57921887--57921917	10	3.1	10	95	0	53	48	0	9	41	1.36
57921903--57921967	26	2.5	26	72	16	62	61	0	6	32	1.21
57921950--57922015	33	2.0	33	85	11	91	48	3	9	39	1.50
57921996--57922031	18	2.0	18	94	0	63	52	0	8	38	1.32
57922113--57922164	26	2.0	27	88	3	79	61	1	7	28	1.34
57922815--57922840	2	13.0	2	100	0	52	0	0	50	50	1.00
57923210--57923236	13	2.1	13	100	0	54	7	14	37	40	1.74
57934093--57934127	1	35.0	1	88	0	52	0	5	0	94	0.32
57934091--57934127	11	3.1	12	92	7	58	0	8	0	91	0.41
57934207--57934241	11	3.0	12	87	8	54	0	17	0	82	0.66
57936156--57936193	15	2.5	16	83	12	53	68	10	0	21	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57936906--57936946	20	2.0	20	90	9	66	63	17	4	14	1.47
57937550--57937632	24	3.3	24	66	33	66	43	8	1	46	1.41
57937509--57937675	52	3.2	51	93	3	271	45	6	1	46	1.39
57940249--57940289	22	1.9	21	85	14	57	26	21	21	29	1.99
57944396--57944483	13	7.5	13	67	26	54	36	1	0	62	1.03
57944394--57944482	21	4.0	21	77	11	97	38	1	0	60	1.04
57954139--57955036	456	2.0	455	99	0	1760	27	13	18	40	1.88
57958160--57958202	16	2.6	17	83	16	56	55	0	0	44	0.99
57958188--57958236	18	2.7	20	75	18	52	53	0	0	46	1.00
57958166--57958540	100	3.5	101	72	16	314	50	2	1	45	1.23
57958231--57958428	44	4.8	44	68	22	135	50	2	1	45	1.24
57958289--57958472	61	3.0	60	72	15	189	48	4	1	45	1.32
57958214--57958634	120	3.7	117	79	13	468	49	3	2	44	1.30
57958483--57958520	16	2.4	17	82	13	53	55	0	0	44	0.99
57958476--57958530	15	3.7	15	80	9	60	52	0	0	47	1.00
57958376--57958572	100	2.0	100	94	0	349	50	3	2	44	1.30
57958158--57958634	220	2.2	219	88	5	687	50	2	2	44	1.28
57959624--57959894	137	2.0	138	91	2	447	46	14	14	25	1.81
57967282--57967307	12	2.2	12	100	0	52	57	0	19	23	1.40
57975541--57975590	25	2.0	25	100	0	100	28	24	16	32	1.96
57990953--57991051	41	2.4	41	89	1	155	24	22	13	40	1.89
57997768--57997823	26	2.1	28	83	6	71	57	7	0	35	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57997768--57997821	28	2.0	28	86	10	78	57	7	0	35	1.27
58002444--58002536	44	2.1	44	82	6	107	33	2	26	37	1.69
58002753--58002796	21	2.1	21	83	8	54	56	6	0	36	1.26
58002808--58002841	17	2.0	17	100	0	68	58	0	0	41	0.98
58002790--58003106	107	3.0	106	89	6	465	52	4	1	41	1.30
58002790--58003112	98	3.1	106	87	7	443	52	4	1	41	1.31
58004541--58004639	50	2.0	50	91	0	162	35	11	12	41	1.78
58006014--58006346	120	3.0	109	86	10	487	42	1	4	51	1.31
58006122--58006322	61	3.3	60	72	19	209	41	0	4	52	1.30
58006303--58006336	17	2.0	17	100	0	68	41	0	0	58	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228