genome.fa.s23.2.7.7.80.10.50.1000.219.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  219  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64323523--64323730	84	2.5	83	85	2	272	34	21	18	25	1.96
64323482--64323731	41	5.9	43	81	4	226	33	21	19	26	1.97
64323760--64323877	43	2.8	41	79	8	112	28	22	16	31	1.96
64324249--64324315	21	3.2	21	84	0	89	2	46	17	32	1.64
64329831--64330034	9	23.2	9	68	14	104	30	2	20	46	1.63
64329876--64329924	19	2.5	20	84	15	68	28	0	18	53	1.45
64329886--64330028	25	6.5	22	66	19	68	29	0	21	48	1.55
64334162--64334308	41	3.6	40	79	9	145	25	20	26	27	1.99
64337462--64337499	16	2.4	16	86	4	51	36	47	0	15	1.46
64338010--64338328	41	7.8	41	72	7	204	37	22	23	16	1.94
64338047--64338279	82	2.8	82	83	4	299	37	23	22	16	1.94
64338048--64338328	82	3.4	81	80	7	293	38	21	22	17	1.93
64339281--64339312	14	2.3	14	94	0	55	59	0	0	40	0.97
64339287--64339317	16	1.9	16	93	0	53	64	0	0	35	0.94
64344004--64344060	15	3.8	15	72	9	62	59	1	5	33	1.30
64354968--64355013	17	2.7	17	100	0	92	36	23	6	32	1.81
64355523--64355548	9	2.9	9	100	0	52	30	0	0	69	0.89
64356337--64356424	29	3.2	29	68	15	96	46	5	3	44	1.43
64356317--64356530	53	4.3	53	76	20	235	48	5	4	41	1.46
64356398--64356477	38	2.2	37	84	6	101	50	6	2	41	1.41
64356317--64356547	91	2.5	90	86	6	304	48	6	4	40	1.47
64357497--64357524	12	2.3	12	100	0	56	39	0	32	28	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64377163--64377376	78	2.7	79	71	21	203	29	21	20	29	1.98
64378171--64378209	1	39.0	1	84	0	51	5	0	2	92	0.46
64378171--64378211	20	2.0	20	90	0	64	7	0	2	90	0.54
64386579--64386619	15	2.7	15	84	0	55	56	17	24	2	1.53
64387352--64387434	42	2.0	42	90	0	130	14	38	26	20	1.91
64387399--64387625	103	2.2	105	84	7	286	22	31	22	23	1.98
64389540--64389656	43	2.7	43	82	2	126	41	15	21	22	1.90
64389735--64389819	27	3.1	27	74	0	80	40	10	27	22	1.87
64409261--64409633	44	8.6	42	72	11	204	31	20	21	26	1.98
64409484--64409645	87	1.9	87	84	2	218	29	20	24	25	1.99
64409308--64409749	218	2.0	213	80	6	480	31	19	22	26	1.98
64410200--64410229	15	1.9	16	93	6	53	46	46	0	6	1.29
64411470--64411511	19	2.1	21	86	8	61	40	4	0	54	1.21
64411474--64411534	20	3.1	20	79	6	54	44	8	0	47	1.33
64414436--64414475	18	2.3	18	86	4	55	50	2	5	42	1.37
64415150--64415196	16	2.9	16	77	20	53	14	8	0	76	1.01
64416756--64416893	64	2.2	61	84	8	179	35	7	0	56	1.32
64416836--64416869	16	2.1	16	89	10	52	38	11	0	50	1.39
64423727--64423917	105	1.8	104	95	1	346	36	4	9	48	1.58
64436969--64437022	25	2.2	25	83	6	65	68	3	5	22	1.26
64437444--64437482	19	2.1	19	90	9	62	38	0	0	61	0.96
64437446--64437496	19	2.5	20	81	9	59	43	1	0	54	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64446470--64446540	15	4.8	15	73	22	60	59	1	2	36	1.21
64446472--64446556	28	3.0	28	78	10	86	57	2	3	36	1.29
64456777--64456814	16	2.4	16	86	4	51	5	21	13	60	1.52
64461443--64461468	4	6.5	4	100	0	52	50	23	0	26	1.50
64467760--64467895	51	2.7	50	77	8	123	38	20	5	35	1.75
64468746--64468779	11	3.0	11	91	4	50	20	0	0	79	0.73
64469324--64469353	13	2.4	12	94	5	51	6	0	10	83	0.81
64469526--64469567	18	2.3	18	81	18	52	28	4	0	66	1.12
64469561--64469607	23	2.0	25	83	8	62	42	6	0	51	1.27
64473468--64473507	21	2.0	20	85	5	53	52	5	2	40	1.37
64473485--64473549	28	2.4	27	79	5	78	56	1	3	38	1.24
64485339--64485428	42	2.1	42	83	6	110	56	5	11	26	1.56
64499699--64499763	34	1.9	34	83	0	85	29	23	15	32	1.95
64517686--64517716	14	2.2	14	100	0	62	29	22	19	29	1.98
64528244--64528281	4	9.5	4	100	0	76	50	23	0	26	1.50
64529951--64530056	41	2.6	41	92	0	176	31	24	20	23	1.98
64531111--64531143	17	2.0	17	88	5	50	15	15	9	60	1.58
64534400--64534521	23	5.3	23	78	0	145	31	23	19	24	1.98
64534400--64534521	46	2.7	46	88	0	172	31	23	19	24	1.98
64536163--64536299	51	2.7	51	76	8	127	37	19	5	37	1.74
64536868--64536929	32	1.9	32	83	6	81	43	11	8	37	1.70
64537001--64537044	20	2.3	18	84	7	52	27	0	6	65	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64539673--64539723	24	2.1	24	88	0	75	50	11	1	35	1.50
64540947--64541013	34	1.9	35	84	3	91	44	13	8	32	1.75
64550221--64550268	16	2.8	17	71	9	53	37	12	2	47	1.53
64554857--64554888	4	8.0	4	100	0	64	50	25	0	25	1.50
64565368--64565415	14	3.4	15	75	18	50	45	4	4	45	1.41
64565426--64565463	17	2.2	17	86	9	51	15	7	5	71	1.28
64572148--64572188	21	2.0	21	85	0	55	31	21	26	19	1.97
64590753--64590864	51	2.2	51	84	6	138	35	17	5	41	1.73
64591574--64591617	19	2.5	17	82	17	54	22	0	2	75	0.92
64591718--64591752	16	2.3	15	95	5	61	54	0	0	45	0.99
64595453--64595510	30	2.0	29	83	10	73	51	10	5	32	1.58
64595904--64595942	19	2.1	18	90	4	60	25	0	5	69	1.09
64596637--64596679	22	2.0	23	81	9	54	13	48	18	18	1.80
64601424--64601498	9	8.4	9	92	2	116	41	24	9	25	1.84
64602301--64602334	15	2.2	16	94	5	61	41	0	5	52	1.25
64602301--64602334	16	2.2	15	89	5	50	41	0	5	52	1.25
64603789--64604034	125	2.0	125	90	0	384	33	16	26	23	1.96
64611218--64611274	30	1.9	30	92	0	96	45	22	1	29	1.63
64611562--64611619	19	3.3	17	74	11	55	68	1	0	29	0.99
64611558--64611619	16	3.5	18	75	16	58	69	1	0	29	0.98
64611838--64611975	9	15.1	9	70	22	92	34	2	1	61	1.20
64611838--64611975	36	3.8	36	74	15	124	34	2	1	61	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64611854--64611975	54	2.3	51	77	16	122	33	3	1	61	1.22
64614019--64614087	29	2.3	29	87	5	93	47	14	14	23	1.81
64618737--64618765	8	3.6	8	100	0	58	44	0	0	55	0.99
64620154--64620189	13	2.4	16	73	26	51	13	5	11	69	1.34
64620161--64620188	13	2.2	13	100	0	56	14	7	14	64	1.48
64627131--64627223	18	5.2	18	88	0	132	30	24	13	31	1.94
64636543--64636568	4	6.5	4	100	0	52	50	23	0	26	1.50
64638461--64638600	18	8.2	17	71	19	96	40	0	2	56	1.16
64638747--64638852	44	2.5	41	75	19	101	34	30	4	30	1.78
64638759--64638852	44	2.1	44	90	4	143	35	29	5	29	1.80
64638834--64638886	16	3.3	16	97	0	97	20	33	5	39	1.76
64641288--64641322	17	2.0	18	88	5	54	28	0	0	71	0.86
64642442--64642494	24	2.2	24	89	0	79	49	9	3	37	1.53
64646730--64646914	101	1.8	102	90	3	302	25	17	26	30	1.97
64646730--64646914	51	3.7	50	82	6	205	25	17	26	30	1.97
64646983--64647068	33	2.6	33	100	0	172	17	23	27	31	1.97
64647046--64647199	44	3.6	42	82	7	168	20	18	27	33	1.96
64685915--64686182	104	2.6	105	92	1	441	18	20	30	30	1.97
64688095--64688129	3	11.7	3	100	0	70	34	0	0	65	0.93
64688564--64688617	22	2.4	23	75	3	56	31	9	7	51	1.61
64711983--64712616	99	6.4	99	92	1	1051	33	24	19	22	1.97
64711983--64712616	197	3.2	197	95	1	1110	33	24	19	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64711983--64712616	294	2.1	296	91	1	1049	33	24	19	22	1.97
64713926--64713971	3	15.7	3	93	4	58	34	6	0	58	1.24
64714405--64714458	22	2.4	23	75	3	56	31	9	7	51	1.61
64715847--64715876	13	2.3	13	94	0	51	33	3	13	50	1.58
64715971--64716068	50	2.0	50	91	0	160	27	19	30	22	1.98
64716035--64716099	31	2.1	31	91	0	103	26	21	30	21	1.98
64715985--64716149	81	2.0	81	88	4	244	26	20	30	23	1.98
64716066--64716244	50	3.6	49	81	5	198	25	22	29	22	1.99
64721859--64722016	82	1.9	82	84	2	210	34	23	13	28	1.92
64721844--64722026	82	2.2	82	80	2	208	34	22	14	27	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228