genome.fa.s23.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  152  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45724424--45724951	262	2.0	262	97	0	993	34	23	14	27	1.93
45730198--45730251	24	2.2	24	78	21	60	61	5	3	29	1.36
45757786--45757878	47	2.0	47	100	0	186	21	27	21	29	1.99
45759982--45760014	17	1.9	18	88	11	52	42	15	0	42	1.46
45770558--45770588	6	5.2	6	100	0	62	0	32	0	67	0.91
45773548--45773730	95	1.9	96	83	10	241	39	13	13	33	1.83
45774961--45775069	57	1.9	58	88	1	166	28	28	19	23	1.98
45775289--45775552	40	6.6	40	91	0	420	25	28	23	22	1.99
45776977--45777525	47	11.6	47	92	2	893	29	29	8	33	1.86
45779666--45779843	85	2.1	84	97	1	338	26	28	8	37	1.85
45787586--45787830	48	5.1	48	86	0	283	27	20	27	24	1.99
45796328--45796583	72	3.6	72	98	0	494	42	24	6	26	1.78
45796584--45796615	3	10.7	3	100	0	64	68	0	0	31	0.90
45800833--45801088	72	3.6	72	99	0	503	42	24	6	27	1.78
45801089--45801126	3	12.7	3	100	0	76	68	0	0	31	0.90
45803673--45803768	48	2.0	48	97	0	183	34	4	32	29	1.77
45808094--45808145	23	2.3	23	80	6	61	38	0	7	53	1.30
45811186--45811237	22	2.2	24	80	16	65	34	7	30	26	1.85
45818104--45818177	36	2.1	36	97	0	139	35	27	12	25	1.91
45819951--45819991	20	2.0	20	86	9	57	60	0	2	36	1.10
45820028--45820063	16	2.2	17	90	5	56	27	0	0	72	0.85
45821028--45821089	32	1.9	32	96	0	115	59	20	3	16	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45823640--45823695	21	2.7	21	91	0	94	25	8	37	28	1.86
45823801--45823838	19	2.1	19	90	5	60	42	0	0	57	0.98
45833037--45833087	13	4.2	13	73	14	54	43	0	1	54	1.11
45833094--45833124	3	10.3	3	100	0	62	35	0	0	64	0.94
45833171--45833218	19	2.5	20	86	6	64	50	4	8	37	1.52
45833181--45833219	20	2.0	20	95	5	71	51	2	5	41	1.38
45833314--45833343	15	2.0	15	100	0	60	80	6	13	0	0.91
45833381--45833411	6	5.2	6	100	0	62	83	0	16	0	0.64
45833779--45833812	17	1.9	18	88	5	52	41	0	23	35	1.55
45835855--45835945	45	2.0	45	100	0	182	38	4	6	50	1.48
45837282--45837311	4	7.5	4	92	0	51	20	0	26	53	1.46
45841394--45841438	21	2.1	21	91	0	72	37	51	11	0	1.38
45847329--45847388	29	2.1	29	80	0	66	30	8	16	45	1.77
45847530--45847597	31	2.2	30	84	5	91	42	13	10	33	1.78
45862973--45862998	3	8.7	3	100	0	52	69	0	0	30	0.89
45878092--45878121	15	1.9	16	93	6	53	53	6	0	40	1.27
45878357--45878381	3	8.3	3	100	0	50	68	0	0	32	0.90
45881437--45881528	19	4.8	19	94	0	166	38	16	8	36	1.79
45881414--45881528	38	2.9	38	93	5	185	39	16	7	36	1.78
45882325--45882583	136	1.9	136	86	0	374	30	27	22	19	1.98
45887765--45887812	21	2.3	21	88	0	69	39	0	41	18	1.51
45889724--45889800	27	2.8	26	73	7	73	45	2	0	51	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45889768--45889805	19	1.9	19	89	5	58	44	0	0	55	0.99
45890881--45890920	20	2.0	20	85	4	55	32	0	5	62	1.17
45891689--45891716	3	9.3	3	100	0	56	64	0	35	0	0.94
45893802--45893837	19	1.9	18	88	5	54	50	5	2	41	1.40
45897005--45897095	9	9.5	10	66	21	52	38	3	2	56	1.28
45897055--45897097	20	2.2	20	91	0	68	41	0	2	55	1.12
45901042--45901103	25	2.5	24	71	2	61	33	20	19	25	1.96
45907191--45907401	43	4.9	43	83	1	226	36	19	16	27	1.93
45910339--45910372	17	2.1	17	88	5	52	55	8	14	20	1.65
45923712--45923755	11	3.9	11	82	5	52	34	0	2	63	1.07
45926448--45926552	43	2.4	43	79	3	113	30	23	17	28	1.97
45932298--45932408	43	2.6	43	80	0	123	30	24	18	27	1.97
45935298--45935341	22	2.0	22	82	8	54	31	20	15	31	1.94
45935980--45936022	19	2.3	19	88	8	61	18	11	11	58	1.63
45936270--45936324	20	2.8	19	81	5	65	50	10	5	32	1.60
45946744--45946768	13	1.9	13	100	0	50	56	0	0	44	0.99
45947512--45947588	27	2.9	27	80	3	84	29	15	29	24	1.96
45950470--45950494	3	8.3	3	100	0	50	68	0	0	32	0.90
45952856--45952921	29	2.3	29	75	17	66	48	1	4	45	1.32
45953785--45953817	14	2.4	14	100	0	66	0	45	0	54	0.99
45956765--45956825	19	3.3	18	84	6	70	55	3	0	40	1.16
45956782--45956825	18	2.5	17	85	10	61	52	4	0	43	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45967108--45967206	32	3.1	31	75	5	90	26	29	24	20	1.99
45969230--45969302	38	1.9	37	83	10	94	52	2	0	45	1.15
45970812--45970896	37	2.3	38	95	4	163	41	3	28	27	1.72
45971413--45971447	13	2.7	13	90	0	61	8	8	0	82	0.83
45980002--45980026	4	6.2	4	100	0	50	24	0	0	76	0.80
45980797--45981365	126	4.5	125	89	1	820	30	16	23	29	1.96
45980797--45981365	251	2.3	251	89	2	858	30	16	23	29	1.96
45984355--45984725	104	3.5	104	90	7	600	41	7	9	41	1.65
45984727--45985255	22	24.5	22	84	5	670	25	0	28	45	1.56
45984727--45985255	43	12.2	43	83	5	656	25	0	28	45	1.56
45985019--45985056	9	4.4	9	83	12	53	13	2	31	52	1.54
45986650--45986687	20	1.9	20	84	10	51	55	7	2	34	1.43
45987622--45987721	51	2.0	51	84	7	132	48	2	25	25	1.62
45987699--45987734	11	3.2	11	96	4	63	44	0	36	19	1.51
45995179--45995237	28	2.1	28	100	0	118	28	28	8	33	1.87
45998925--45998970	11	4.2	11	86	8	58	23	28	0	47	1.52
45998925--45998967	10	4.0	10	82	11	50	23	30	0	46	1.52
46000766--46000808	18	2.4	18	88	0	59	18	27	9	44	1.80
46001229--46001496	49	5.5	49	96	0	457	42	2	8	46	1.46
46001319--46001402	29	3.2	29	62	28	78	42	2	9	45	1.49
46004558--46005217	125	5.3	125	90	1	1040	29	20	17	32	1.95
46008059--46008091	17	1.9	17	93	0	57	27	3	3	66	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46008748--46008889	74	1.9	72	85	7	196	30	18	16	33	1.93
46009028--46009230	106	1.9	107	88	5	313	28	17	20	33	1.95
46012572--46012634	17	3.8	17	76	21	53	77	1	17	3	0.97
46012572--46012625	22	2.5	21	77	16	56	77	1	16	3	1.00
46012577--46012630	28	1.9	28	85	7	74	77	1	16	3	1.00
46012577--46012631	6	9.5	6	76	7	51	78	1	16	3	0.98
46012572--46012630	11	5.4	11	73	13	50	77	1	16	3	0.98
46013868--46014428	45	12.6	45	75	7	495	29	25	22	22	1.99
46013868--46014455	89	6.6	89	90	0	856	29	25	23	21	1.99
46014480--46014705	50	4.5	49	72	5	157	33	20	20	26	1.97
46014471--46014733	100	2.6	99	80	4	296	33	20	20	25	1.97
46014754--46014954	44	4.5	44	76	8	185	30	17	23	28	1.97
46014736--46015168	89	4.9	88	74	16	265	31	19	22	26	1.98
46014736--46015176	44	10.1	44	68	16	152	31	19	22	26	1.98
46014928--46015347	129	3.3	129	83	3	544	30	23	20	25	1.99
46014941--46015257	44	7.4	44	67	14	169	29	22	22	24	1.99
46018264--46018302	19	2.1	18	85	4	51	28	2	5	64	1.28
46020298--46020437	72	1.9	73	91	4	230	29	20	17	33	1.95
46024254--46024331	38	2.1	37	83	7	95	65	1	3	29	1.18
46025892--46025959	24	2.9	23	80	10	59	58	0	1	39	1.07
46028385--46028420	14	2.3	17	86	13	51	33	16	0	50	1.46
46038522--46038764	40	6.1	40	82	1	265	32	19	18	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46038527--46038771	81	3.1	79	81	7	280	29	20	19	30	1.97
46038522--46038747	121	1.9	118	85	4	310	32	19	19	28	1.96
46038805--46038910	40	2.6	39	85	5	140	30	23	24	21	1.99
46039155--46039202	26	1.9	25	91	8	80	43	8	0	47	1.33
46039269--46039338	27	2.6	27	88	4	106	28	28	27	15	1.96
46039378--46039528	4	37.0	4	78	16	125	69	0	30	0	0.89
46039425--46039554	45	3.0	45	84	7	153	71	0	27	0	0.91
46039395--46039591	37	5.5	34	73	19	118	69	0	29	0	0.92
46039369--46039593	40	5.7	41	77	17	194	68	0	31	0	0.93
46040108--46040137	16	1.9	15	93	6	51	70	0	3	26	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228