genome.fa.s23.2.7.7.80.10.50.1000.204.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  204  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59772949--59773074	38	3.2	36	77	21	137	44	14	3	38	1.61
59773175--59773701	9	59.4	9	71	10	345	45	18	2	33	1.62
59773354--59773437	43	2.0	43	92	0	141	46	16	0	36	1.48
59773170--59773569	171	2.3	173	93	1	714	47	16	2	33	1.60
59773643--59773692	16	3.0	16	80	16	57	44	20	2	34	1.63
59779602--59779804	42	4.8	43	91	3	333	36	21	20	21	1.95
59779602--59779804	85	2.4	83	91	4	327	36	21	20	21	1.95
59781061--59781462	43	9.3	43	77	5	267	27	28	20	22	1.99
59781052--59781487	86	5.1	86	73	7	294	26	28	20	24	1.99
59781252--59781503	43	5.9	42	82	3	218	30	29	17	22	1.97
59781804--59781896	21	4.4	21	84	0	123	5	44	17	33	1.71
59781844--59781916	21	3.5	21	74	7	58	6	39	17	35	1.77
59781926--59782049	66	1.9	66	88	3	187	14	26	16	41	1.87
59787395--59787602	9	24.8	9	70	19	137	31	1	20	46	1.60
59787395--59787553	16	9.8	16	69	21	100	32	1	20	45	1.59
59787395--59787575	25	7.4	25	74	14	135	32	1	20	45	1.59
59787536--59787596	20	2.8	21	75	22	70	31	0	19	49	1.49
59787807--59787895	43	2.1	43	97	0	169	48	8	6	35	1.61
59787921--59788091	18	8.5	18	70	26	105	43	0	12	43	1.46
59787926--59788079	21	7.2	23	68	22	79	42	0	12	43	1.48
59787923--59788135	44	5.0	44	73	18	207	42	0	11	44	1.47
59787930--59788135	83	2.4	83	91	5	315	42	0	11	45	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59788050--59788091	17	2.4	18	88	11	61	47	0	11	40	1.40
59788063--59788118	27	2.0	28	89	3	87	44	1	8	44	1.45
59788152--59788184	10	3.1	11	86	8	50	36	21	9	33	1.85
59789237--59789267	12	2.6	12	94	0	53	67	16	9	6	1.39
59789475--59789786	157	2.0	157	98	0	597	33	18	14	33	1.91
59789839--59789899	16	3.8	16	82	4	86	59	13	4	22	1.53
59789838--59789900	33	1.9	33	100	0	126	57	12	6	23	1.58
59790215--59790253	14	2.8	14	80	0	51	5	10	7	76	1.13
59792167--59792281	42	2.8	41	85	10	137	33	26	17	21	1.96
59792316--59792430	40	2.9	38	82	7	131	20	20	19	39	1.93
59796302--59796339	19	2.0	19	94	0	67	28	10	2	57	1.45
59796547--59796829	43	6.6	43	84	2	336	20	16	32	29	1.95
59796547--59796829	129	2.2	129	85	2	381	20	16	32	29	1.95
59797587--59797651	22	3.2	22	77	12	68	50	1	3	44	1.26
59797586--59797659	22	3.4	22	73	17	57	48	1	2	47	1.24
59798117--59798192	29	2.7	29	83	6	84	63	5	1	30	1.25
59799932--59799956	6	4.2	6	100	0	50	80	0	0	20	0.72
59800188--59800264	9	8.6	9	78	13	52	33	2	1	62	1.17
59800119--59800234	17	6.4	18	66	15	51	31	5	2	61	1.31
59800195--59800260	25	2.4	27	78	12	64	34	3	1	60	1.21
59801092--59801145	24	2.2	24	96	0	99	38	11	11	38	1.76
59802989--59803067	33	2.4	33	80	4	88	24	46	1	27	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59804389--59804428	12	3.2	12	85	7	53	20	27	0	52	1.46
59808468--59808492	12	2.1	12	100	0	50	52	0	0	48	1.00
59812052--59812088	19	1.9	19	88	0	56	54	5	2	37	1.38
59812248--59812278	12	2.6	12	94	0	53	61	3	9	25	1.42
59814143--59814574	114	3.8	114	85	2	573	31	21	18	28	1.97
59814161--59814570	228	1.8	227	89	0	640	32	20	18	28	1.97
59814475--59814620	74	2.0	73	82	8	179	30	19	21	28	1.98
59815362--59815403	21	2.0	21	85	0	57	40	7	2	50	1.43
59815427--59815475	20	2.4	20	86	3	62	32	2	8	57	1.40
59815441--59815490	20	2.5	20	96	3	93	32	0	12	56	1.36
59816161--59816211	19	2.7	19	84	9	68	27	41	0	31	1.56
59817171--59817196	5	5.2	5	100	0	52	42	19	19	19	1.90
59822579--59822995	43	9.7	43	83	2	385	34	21	19	24	1.96
59822892--59823018	43	3.0	43	81	7	125	26	24	21	27	1.99
59823585--59823706	48	2.6	47	80	1	145	28	22	14	34	1.94
59836421--59836465	23	1.9	24	81	4	56	22	2	48	26	1.62
59836881--59836932	17	2.9	18	74	5	61	44	1	17	36	1.60
59839233--59839408	46	3.8	46	79	12	216	20	21	29	28	1.98
59839230--59839401	93	1.8	93	96	0	317	20	21	29	27	1.98
59846798--59846973	46	3.8	46	79	12	207	19	21	29	29	1.98
59846795--59846966	93	1.8	93	94	0	308	20	21	29	28	1.98
59848930--59849005	38	2.0	38	100	0	152	42	5	34	18	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59849438--59849575	69	2.0	69	94	0	240	47	20	16	15	1.83
59861561--59861608	21	2.3	22	78	7	55	29	29	25	16	1.97
59863019--59863159	47	2.9	49	76	8	151	26	14	21	36	1.92
59875318--59875655	132	2.6	132	94	1	590	28	23	19	28	1.98
59875378--59875588	44	4.8	44	67	9	133	27	22	18	31	1.97
59875671--59875774	44	2.4	44	90	0	163	30	21	19	28	1.97
59875990--59876522	89	6.0	88	87	5	608	25	24	19	30	1.98
59876018--59876266	45	5.6	44	73	10	220	25	24	19	30	1.98
59875994--59876538	179	3.1	175	85	5	693	25	24	19	30	1.98
59877857--59877946	46	2.0	46	88	0	135	12	25	17	44	1.84
59877860--59877956	46	2.1	46	82	0	113	12	27	16	43	1.84
59884431--59884768	132	2.6	132	94	1	590	28	23	19	28	1.98
59884491--59884701	44	4.8	44	67	9	133	27	22	18	31	1.97
59884784--59884887	44	2.4	44	90	0	163	30	21	19	28	1.97
59885102--59885604	44	11.3	44	69	9	333	25	24	18	31	1.98
59885102--59885632	88	6.0	89	87	4	619	25	24	19	30	1.98
59885412--59885665	44	5.7	44	72	6	206	24	24	21	29	1.99
59886960--59887049	46	2.0	46	88	0	135	12	25	17	44	1.84
59886963--59887059	46	2.1	46	82	0	113	12	27	16	43	1.84
59897581--59897611	10	3.0	10	95	4	53	38	29	3	29	1.73
59901698--59902251	50	11.1	50	73	5	325	23	21	23	31	1.98
59901673--59902251	100	5.8	100	87	4	749	24	21	22	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59902253--59902493	46	5.2	46	90	0	365	30	18	17	33	1.94
59902498--59902795	88	3.4	86	76	12	320	30	20	16	31	1.95
59902412--59902796	175	2.2	175	90	0	619	30	20	17	31	1.95
59902274--59902796	92	5.9	85	78	9	320	30	19	17	32	1.95
59902274--59902793	46	11.7	44	72	12	189	30	19	17	32	1.95
59905138--59905198	23	2.7	23	75	19	65	67	4	0	27	1.11
59905146--59905213	20	3.2	20	76	14	57	63	5	2	27	1.32
59905225--59905292	16	4.2	16	71	12	50	72	4	4	19	1.19
59906616--59907176	50	11.2	50	71	3	403	24	20	22	33	1.97
59906616--59907188	100	5.7	100	83	2	693	23	20	22	32	1.98
59907449--59907687	44	5.5	44	69	15	147	30	20	17	31	1.96
59907350--59907748	175	2.3	175	91	0	656	29	21	17	31	1.96
59907196--59907610	46	9.2	46	79	8	399	29	19	17	32	1.95
59907217--59907735	46	11.7	44	73	11	181	30	20	17	32	1.95
59908972--59909014	21	2.0	22	90	4	70	13	13	2	69	1.28
59914925--59914993	21	3.2	21	76	10	59	63	5	2	27	1.31
59915005--59915073	19	3.9	17	73	17	54	72	4	2	20	1.15
59921716--59922052	44	7.7	44	78	5	254	35	15	19	29	1.93
59921746--59921999	88	2.9	88	78	2	285	35	16	18	29	1.93
59921787--59922039	132	1.9	132	83	0	326	35	17	18	28	1.94
59921735--59922039	88	3.5	88	74	9	280	35	16	19	28	1.93
59922982--59923045	31	2.1	30	85	2	83	54	1	17	26	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59923486--59923515	4	7.5	4	92	0	51	23	3	0	73	0.98
59925529--59925568	20	2.0	20	90	0	62	27	10	12	50	1.72
59925514--59925580	34	1.9	35	90	3	109	31	8	13	46	1.74
59925508--59925584	14	5.0	15	71	20	52	33	9	14	42	1.77
59937664--59937707	21	2.1	21	83	8	54	43	2	4	50	1.35
59941501--59941561	28	2.2	28	100	0	122	29	13	18	39	1.88
59943445--59943470	6	4.3	6	100	0	52	15	15	38	30	1.88
59944412--59944451	22	1.9	20	85	10	53	55	10	7	27	1.60
59944467--59944511	22	2.0	23	82	4	56	60	15	11	13	1.60
59946718--59946756	19	2.0	19	85	5	51	33	2	2	61	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228