genome.fa.s23.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  160  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48111333--48111423	46	2.0	46	100	0	182	32	7	24	35	1.84
48141321--48141538	114	1.9	113	79	7	244	32	15	13	38	1.86
48143737--48143798	18	3.4	18	88	0	79	24	11	29	35	1.90
48144002--48144044	18	2.4	18	80	7	52	46	2	0	51	1.13
48145745--48145808	21	3.0	22	75	9	78	35	25	20	18	1.95
48146665--48146698	11	2.8	12	86	13	52	0	23	0	76	0.79
48146961--48147003	13	3.3	13	83	9	61	60	0	0	39	0.97
48147816--48147911	40	2.4	41	82	5	115	29	38	11	20	1.88
48147894--48148061	39	4.3	39	72	6	110	29	39	11	19	1.87
48155265--48155298	14	2.5	14	95	4	61	14	0	35	50	1.44
48157404--48157437	17	2.1	17	88	5	52	50	0	17	32	1.47
48158307--48158404	42	2.3	42	94	0	169	34	10	27	27	1.89
48164372--48164422	23	2.3	21	75	21	50	52	3	0	43	1.19
48183969--48183997	12	2.3	13	94	5	51	48	17	13	20	1.81
48184410--48184601	96	2.0	96	98	0	375	33	18	16	31	1.93
48187687--48187724	20	2.0	20	85	10	53	50	0	0	50	1.00
48188445--48188483	14	2.8	14	80	0	51	53	0	0	46	1.00
48191451--48191546	27	3.6	27	80	2	95	15	29	20	34	1.94
48191471--48191546	27	2.8	27	81	0	98	15	27	21	35	1.94
48200607--48200634	7	4.0	7	100	0	56	28	14	14	42	1.84
48201272--48201311	21	1.9	21	85	10	55	20	0	5	75	0.99
48222021--48222057	16	2.3	16	100	0	74	37	5	35	21	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48222037--48222127	46	2.0	46	93	4	159	26	4	30	38	1.76
48222286--48222324	17	2.5	15	84	15	60	61	0	0	38	0.96
48222291--48222324	17	2.0	17	100	0	68	58	0	0	41	0.98
48222357--48222396	20	2.0	21	85	5	55	60	5	0	35	1.19
48222380--48222441	25	2.4	25	86	7	81	58	0	0	41	0.98
48222483--48222546	32	2.0	32	81	0	74	50	1	0	48	1.10
48222335--48222528	105	1.8	106	91	7	322	52	4	0	43	1.24
48223862--48223965	49	2.1	49	87	0	145	50	9	8	30	1.65
48225591--48225624	12	2.8	12	81	0	50	55	20	23	0	1.43
48226691--48226735	22	2.0	22	83	12	56	51	2	8	37	1.46
48227551--48227575	13	1.9	13	100	0	50	32	8	40	20	1.81
48228756--48228804	22	2.3	20	77	16	53	48	2	2	46	1.25
48228768--48228826	25	2.5	22	78	19	66	50	1	0	47	1.11
48229331--48229372	22	2.0	21	95	4	75	23	19	0	57	1.41
48229950--48229986	13	2.8	13	84	15	58	37	0	35	27	1.57
48231759--48231801	17	2.5	17	96	0	77	48	18	11	20	1.79
48237268--48237304	19	1.9	19	89	10	58	32	2	0	64	1.07
48237659--48237709	18	2.9	17	80	11	59	78	0	7	13	0.96
48237660--48237710	9	5.6	9	75	11	50	80	0	5	13	0.89
48239076--48239104	13	2.1	14	93	6	51	6	3	6	82	0.93
48257021--48257177	42	3.7	40	80	10	163	36	20	19	23	1.95
48257021--48257177	84	1.9	85	86	1	226	36	20	19	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48261184--48261248	22	3.0	22	79	0	67	20	15	16	47	1.82
48263720--48263810	27	3.4	27	79	14	91	37	21	18	21	1.94
48263976--48264045	26	2.7	26	81	16	74	18	24	21	35	1.95
48264041--48264092	26	2.0	26	84	0	68	13	25	28	32	1.93
48264083--48264285	32	6.4	32	84	2	239	19	19	21	38	1.93
48264277--48264341	22	3.0	22	76	0	67	16	18	20	44	1.87
48264455--48264508	28	1.9	28	92	0	90	16	27	25	29	1.97
48266747--48266832	21	4.0	21	79	13	95	37	24	23	15	1.93
48266747--48266833	44	2.0	41	82	10	104	36	24	22	16	1.94
48267302--48267385	22	3.9	22	73	14	68	48	0	1	50	1.08
48267413--48267485	19	3.7	19	70	24	62	46	1	0	52	1.09
48267503--48267536	15	2.2	16	89	5	52	55	0	0	44	0.99
48267563--48267619	15	3.5	15	71	17	51	49	1	1	47	1.22
48269263--48269309	23	2.0	23	91	0	76	42	10	4	42	1.59
48269871--48270085	108	2.0	108	93	0	367	27	11	18	42	1.84
48274008--48274085	40	2.0	40	84	5	104	29	23	29	17	1.97
48274167--48274452	42	6.9	42	89	1	380	15	25	26	32	1.95
48276579--48276635	25	2.4	22	80	13	60	19	42	1	36	1.62
48276611--48276649	16	2.6	15	84	11	53	23	35	5	35	1.77
48276865--48276938	33	2.2	33	92	2	121	32	2	28	36	1.71
48277179--48277216	17	2.2	17	95	0	67	10	36	13	39	1.79
48278227--48278295	36	1.9	36	96	0	129	31	10	8	49	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48278693--48278745	24	2.2	24	96	0	97	43	3	3	49	1.38
48278851--48278896	22	2.1	22	88	8	67	45	10	4	39	1.59
48278836--48279210	56	6.7	56	99	0	732	46	10	2	39	1.54
48278907--48278952	22	2.1	22	88	8	67	45	10	4	39	1.59
48278963--48279008	22	2.1	22	88	8	67	45	10	4	39	1.59
48279019--48279064	22	2.1	22	91	0	74	47	10	2	39	1.51
48279075--48279120	22	2.1	22	88	8	67	45	10	4	39	1.59
48279131--48279176	22	2.1	22	91	0	74	47	10	2	39	1.51
48279153--48279299	34	4.5	34	78	10	180	48	9	3	38	1.52
48279197--48279424	9	26.7	9	66	17	67	44	14	3	38	1.60
48279097--48279305	96	2.3	90	89	6	303	47	10	3	38	1.55
48279141--48279324	96	1.9	95	90	4	271	47	12	2	37	1.56
48279305--48279382	34	2.3	33	80	2	84	43	14	1	41	1.53
48279426--48279481	25	2.2	25	83	0	67	44	14	5	35	1.68
48279462--48279495	16	2.1	16	94	0	59	52	14	0	32	1.42
48284897--48285067	66	2.6	65	85	4	209	39	19	27	13	1.89
48285039--48285150	21	5.3	21	78	4	73	37	16	41	4	1.69
48285454--48285616	43	3.7	42	78	11	175	20	19	31	29	1.97
48285453--48285616	89	1.8	89	87	5	242	20	18	31	29	1.97
48285456--48285724	43	6.2	43	75	9	136	26	21	27	24	2.00
48285604--48285748	43	3.4	43	82	9	161	35	24	20	20	1.95
48287025--48287073	24	2.1	23	84	3	62	67	4	0	28	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48287484--48287527	20	2.1	21	87	4	63	54	4	4	36	1.41
48297870--48297971	44	2.3	44	76	6	109	27	21	20	30	1.98
48298080--48298262	44	4.2	44	66	8	111	26	25	18	29	1.98
48297877--48298264	132	2.9	132	89	0	571	26	23	19	30	1.98
48298256--48298551	89	3.3	89	85	0	376	26	23	23	26	2.00
48298390--48298519	44	2.9	44	70	15	122	28	23	21	26	1.99
48298343--48298486	44	3.3	43	70	13	121	25	25	22	26	2.00
48299102--48299342	45	5.4	44	74	10	107	26	24	19	29	1.98
48299138--48299391	45	5.7	44	76	7	217	27	23	18	30	1.98
48299123--48299423	134	2.2	134	81	3	338	25	24	17	31	1.97
48299131--48299423	45	6.6	44	73	10	206	26	24	17	31	1.97
48304368--48304436	22	3.1	22	83	8	95	43	15	21	18	1.88
48304430--48304492	19	3.0	19	72	24	63	34	17	26	20	1.95
48304449--48304593	25	5.8	25	88	8	215	35	15	24	23	1.94
48304416--48304593	50	3.7	49	83	12	228	36	16	24	22	1.94
48304416--48304593	75	2.5	71	88	7	245	36	16	24	22	1.94
48311041--48311089	25	2.0	25	100	0	98	48	20	18	12	1.79
48311400--48311451	16	3.4	16	73	10	63	19	1	17	61	1.44
48311397--48311457	30	2.0	30	100	0	122	19	3	16	60	1.49
48311402--48311451	15	3.3	15	69	20	50	18	2	18	62	1.43
48311631--48311682	3	17.3	3	100	0	104	32	0	0	67	0.91
48313112--48313137	11	2.4	11	100	0	52	38	7	0	53	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48313185--48313231	21	2.3	21	92	3	78	36	0	0	63	0.94
48313104--48313209	42	2.5	42	92	4	171	35	2	0	61	1.11
48313187--48313231	20	2.2	20	88	7	65	37	0	0	62	0.96
48313185--48313246	20	2.9	21	85	9	63	37	0	3	59	1.13
48316275--48316401	29	4.1	29	72	20	123	53	9	7	29	1.61
48318778--48319104	100	3.1	100	86	8	429	42	2	3	51	1.32
48318861--48318917	26	2.2	26	90	3	87	40	3	1	54	1.28
48318971--48319004	17	2.0	17	100	0	68	41	0	0	58	0.98
48318871--48319141	117	2.3	117	94	0	497	42	2	3	52	1.31
48319088--48319121	17	2.0	17	100	0	68	41	0	0	58	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228