genome.fa.s23.2.7.7.80.10.50.1000.185.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  185  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55148574--55148617	19	2.2	21	84	11	58	38	0	4	56	1.20
55148574--55148644	20	3.7	20	75	16	60	39	2	5	52	1.40
55151407--55151479	31	2.3	29	80	17	83	32	30	10	26	1.90
55151426--55151487	31	2.0	31	93	0	106	33	27	9	29	1.88
55151675--55151874	41	4.9	41	87	3	251	20	28	21	29	1.98
55159193--55159254	31	2.0	31	90	0	97	35	27	8	29	1.85
55159462--55159641	41	4.4	41	83	5	220	21	27	21	30	1.98
55177443--55177471	10	3.0	10	95	5	51	41	0	0	58	0.98
55178112--55178170	29	2.0	30	86	3	84	25	8	16	49	1.74
55178316--55178394	31	2.6	30	76	9	81	41	13	8	35	1.76
55178662--55178711	3	16.7	3	100	0	100	32	0	0	68	0.90
55183800--55183987	95	2.0	95	84	0	250	38	14	16	29	1.89
55186275--55186325	21	2.4	21	86	0	75	13	23	33	29	1.93
55188102--55188165	33	1.9	33	93	0	110	28	17	25	29	1.97
55188187--55188320	68	2.0	68	95	0	241	30	13	16	39	1.87
55188189--55188341	68	2.3	68	89	2	229	31	11	15	41	1.83
55197709--55197808	48	2.1	48	96	0	182	28	25	19	28	1.98
55208624--55208651	5	5.6	5	100	0	56	82	17	0	0	0.68
55209695--55210451	302	2.5	300	84	3	941	32	12	10	44	1.77
55215978--55216063	37	2.3	36	76	11	86	48	17	4	29	1.67
55217433--55217470	18	2.1	18	100	0	76	23	21	23	31	1.98
55218497--55218609	42	2.7	42	90	0	172	21	24	35	18	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55221584--55221623	21	1.9	21	85	10	55	30	2	0	67	1.04
55221583--55221648	29	2.3	29	79	12	73	33	1	3	62	1.20
55221949--55221987	14	2.8	13	85	11	51	53	0	2	43	1.14
55224740--55224869	64	2.0	64	95	0	233	29	11	21	37	1.89
55225741--55225781	20	2.0	20	100	0	82	43	14	14	26	1.84
55233061--55233098	20	2.0	20	89	5	60	50	5	0	44	1.24
55244718--55244819	51	2.0	51	100	0	204	35	7	23	33	1.84
55244732--55244812	25	3.2	25	63	16	67	38	7	22	32	1.82
55244888--55244912	13	1.9	13	100	0	50	36	0	8	56	1.29
55248872--55248994	43	2.9	43	93	0	201	24	29	17	29	1.97
55249156--55249194	20	1.9	20	84	5	51	61	0	2	35	1.10
55257200--55257229	15	2.0	15	93	0	51	33	3	0	63	1.11
55257356--55257419	21	3.0	21	74	0	56	46	31	1	20	1.60
55257499--55257574	21	3.6	22	73	16	63	51	31	0	17	1.45
55257499--55257541	22	2.0	21	90	4	68	51	30	0	18	1.47
55258136--55258672	211	2.5	213	85	3	708	23	17	25	33	1.96
55261942--55262068	41	3.1	40	80	4	121	23	15	24	36	1.94
55263948--55264001	5	10.0	5	77	15	54	40	1	1	55	1.21
55263943--55264010	29	2.4	27	76	9	73	39	1	2	55	1.24
55265622--55265672	27	1.9	26	84	11	68	45	5	13	35	1.68
55270921--55270963	20	2.2	20	95	0	77	39	2	0	58	1.11
55279856--55279907	10	5.0	10	79	9	59	50	0	1	48	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55279832--55279910	32	2.5	32	91	2	124	53	0	1	45	1.08
55284438--55284478	20	2.0	20	85	4	55	70	2	9	17	1.25
55291457--55291500	21	2.1	21	83	8	54	27	11	15	45	1.81
55291718--55291867	41	3.7	41	77	1	140	25	32	19	22	1.97
55292924--55292973	14	3.5	13	79	15	55	78	12	0	10	0.98
55292924--55292962	19	2.1	19	85	0	51	79	12	0	7	0.93
55297144--55297206	32	2.0	32	96	3	119	31	9	15	42	1.79
55304249--55304307	15	3.7	16	75	11	50	72	1	1	23	1.02
55306547--55307189	321	2.0	320	92	2	1067	35	25	13	25	1.92
55310063--55310102	21	2.0	20	85	5	53	55	15	2	27	1.53
55316784--55316838	27	2.0	27	100	0	110	38	25	7	29	1.83
55321606--55321666	32	1.9	32	83	12	81	44	4	1	49	1.33
55321838--55321882	16	2.8	15	83	12	54	15	17	0	66	1.25
55333188--55333276	44	2.0	44	97	0	169	28	10	22	39	1.86
55337242--55337283	13	2.9	14	80	13	50	54	0	0	45	0.99
55337246--55337282	16	2.3	16	86	13	58	59	0	0	40	0.97
55337309--55337366	18	3.2	18	74	13	55	53	5	0	41	1.23
55337679--55337711	9	3.7	9	91	0	57	33	0	18	48	1.48
55337669--55337764	43	2.2	43	83	7	115	35	0	13	51	1.42
55337647--55337754	16	6.9	17	69	18	65	34	0	13	51	1.42
55337635--55337779	61	2.3	64	75	19	169	34	2	13	49	1.56
55337813--55337839	13	2.1	13	100	0	54	37	11	0	51	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55340099--55340157	31	1.9	31	86	6	84	59	0	5	35	1.20
55341732--55341842	44	2.5	44	76	11	109	24	20	22	32	1.98
55341815--55342149	44	7.8	43	73	13	269	28	22	19	29	1.98
55342179--55342338	50	3.2	50	66	8	137	23	26	22	28	1.99
55343500--55343548	25	1.9	26	91	4	82	59	8	14	18	1.59
55345501--55345740	27	8.9	27	86	1	304	18	18	21	40	1.91
55345501--55345753	81	3.1	81	87	2	350	18	18	20	41	1.91
55350953--55350985	16	2.1	16	88	11	50	9	9	0	81	0.87
55350946--55350986	18	2.2	19	91	4	66	12	7	0	80	0.90
55351994--55352023	11	2.6	11	94	5	51	73	10	0	16	1.09
55356501--55356545	22	2.1	22	87	4	65	75	8	4	11	1.17
55356501--55356562	11	5.9	11	73	16	51	72	6	8	12	1.26
55357032--55357057	6	4.3	6	100	0	52	15	34	30	19	1.93
55365878--55365922	22	2.0	22	91	0	72	68	0	4	26	1.08
55367724--55368122	128	3.1	129	90	3	653	33	20	11	34	1.88
55374746--55374786	21	2.0	21	81	18	50	31	19	26	21	1.97
55379025--55379055	15	2.1	15	93	0	53	25	6	29	38	1.81
55383704--55384288	110	5.5	111	71	15	399	58	14	0	26	1.42
55383785--55384288	110	4.8	102	83	7	588	58	14	0	25	1.42
55383699--55384288	212	2.8	213	88	4	829	58	14	0	26	1.42
55384017--55384288	101	2.6	103	86	6	352	58	14	0	26	1.41
55383699--55384337	211	3.0	208	84	8	710	58	14	0	26	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55385412--55385580	57	2.9	57	81	0	194	36	19	14	29	1.92
55386253--55386304	17	2.9	17	85	5	59	48	0	0	51	1.00
55386253--55386301	21	2.5	20	86	6	64	51	0	0	48	1.00
55397313--55397338	12	2.2	12	100	0	52	38	0	7	53	1.30
55397513--55397537	11	2.3	11	100	0	50	44	8	8	40	1.63
55401019--55401070	24	2.2	24	85	0	68	53	9	3	32	1.51
55404256--55404308	22	2.5	22	78	3	63	41	28	20	9	1.83
55407049--55407085	9	4.1	9	85	0	56	48	13	8	29	1.71
55407448--55407508	20	3.2	19	78	15	56	22	34	0	42	1.54
55408001--55408026	5	5.2	5	100	0	52	23	19	19	38	1.93
55412327--55412353	9	3.0	9	100	0	54	44	11	0	44	1.39
55412448--55412494	22	2.1	22	84	7	60	27	2	4	65	1.22
55413348--55413401	27	2.0	27	96	0	99	18	31	9	40	1.82
55413351--55413408	27	2.1	27	90	0	89	22	29	8	39	1.84
55413472--55413549	15	5.2	15	68	11	61	44	7	20	26	1.78
55413468--55413549	30	2.7	30	92	0	128	46	7	20	25	1.76
55417334--55417411	15	5.2	15	68	11	61	44	7	20	26	1.78
55417330--55417411	30	2.7	30	92	0	128	46	7	20	25	1.76
55434825--55434895	29	2.4	30	83	2	90	52	7	8	32	1.59
55442154--55442233	26	3.2	26	63	33	66	40	16	15	28	1.88
55442995--55443260	142	1.9	142	86	3	383	40	20	14	23	1.90
55448750--55448815	27	2.4	27	84	2	78	56	3	0	40	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55448778--55448838	29	2.2	27	82	5	68	54	3	0	42	1.17
55453709--55454035	90	3.6	90	83	2	408	26	6	14	52	1.66
55455843--55455895	24	2.3	23	83	6	70	22	11	0	66	1.24
55455837--55455895	24	2.5	22	79	12	64	23	11	0	64	1.27
55455882--55455941	16	3.6	17	75	22	56	20	8	3	68	1.30
55455890--55455941	16	3.2	15	82	15	59	17	9	3	69	1.31
55455963--55456087	5	23.4	5	73	18	83	28	17	0	52	1.50
55455984--55456071	38	2.3	38	86	5	115	27	17	1	54	1.50
55456023--55456087	28	2.3	28	89	5	96	30	16	1	50	1.55
55456159--55456199	16	2.6	16	88	3	57	24	14	0	60	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228