genome.fa.s23.2.7.7.80.10.50.1000.167.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  167  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50167304--50167464	74	2.2	73	97	1	304	44	36	1	17	1.60
50167304--50167464	73	2.2	68	87	11	196	44	36	1	17	1.60
50167622--50167681	21	2.8	22	82	7	79	85	5	10	0	0.75
50167634--50167681	22	2.1	23	88	11	73	85	6	8	0	0.74
50174083--50174176	25	3.8	25	76	0	89	23	22	25	28	1.99
50179969--50180038	5	13.8	5	75	21	58	24	0	0	75	0.80
50179969--50180030	4	15.8	4	82	17	53	24	0	0	75	0.80
50180214--50180262	21	2.5	20	87	9	66	16	6	4	73	1.19
50182004--50182060	30	1.9	30	88	0	87	19	28	31	21	1.97
50196047--50196208	50	3.3	49	83	1	162	38	22	13	25	1.90
50199099--50199162	30	2.1	30	100	0	128	32	18	14	34	1.91
50199707--50199758	24	2.2	24	85	0	68	36	13	32	17	1.89
50206173--50206266	23	4.1	23	88	2	127	44	25	18	11	1.83
50211285--50211478	98	2.0	97	95	2	354	47	10	11	29	1.73
50214412--50214442	15	2.1	15	93	0	53	29	29	6	35	1.82
50214458--50214634	75	2.4	75	82	5	207	37	22	14	25	1.92
50214460--50214624	25	6.6	25	76	7	147	38	22	13	24	1.91
50225965--50226055	3	30.3	3	97	0	173	0	31	0	68	0.90
50240033--50240071	18	2.2	18	90	0	60	10	5	10	74	1.21
50240038--50240084	18	2.6	19	80	10	53	10	6	6	76	1.15
50242775--50242997	79	2.8	79	83	9	260	25	27	21	25	2.00
50242775--50242997	39	5.7	40	85	8	257	25	27	21	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50250755--50251016	39	6.6	39	87	6	329	25	27	22	25	2.00
50263534--50263610	23	3.4	23	83	3	95	38	20	22	18	1.93
50263928--50263977	25	2.0	25	84	11	66	36	22	0	42	1.54
50264349--50264373	11	2.3	11	100	0	50	28	20	0	52	1.47
50264768--50264802	12	3.0	11	91	8	52	0	22	0	77	0.78
50268662--50268716	22	2.5	21	91	2	83	52	23	5	18	1.65
50269250--50269285	5	7.4	5	87	6	56	77	0	0	22	0.76
50269250--50269285	14	2.5	14	90	4	54	77	0	0	22	0.76
50291843--50291893	21	2.4	21	93	0	84	25	27	11	35	1.91
50293595--50293653	28	2.1	28	93	0	100	45	8	15	30	1.75
50293706--50293809	54	1.9	54	88	0	154	37	6	8	47	1.61
50294178--50294204	9	3.0	9	100	0	54	33	0	11	55	1.35
50294866--50294948	29	2.9	29	90	0	130	34	25	10	28	1.90
50303418--50303458	16	2.4	17	88	8	57	24	7	2	65	1.30
50303517--50303761	43	5.7	43	87	0	330	30	30	17	21	1.96
50304700--50305588	91	9.7	91	80	6	786	41	23	5	29	1.77
50304806--50305596	68	11.6	65	68	20	336	41	23	5	29	1.77
50304988--50305588	114	5.3	114	75	10	356	40	23	5	29	1.78
50304882--50305596	137	5.2	137	94	0	1252	40	23	5	29	1.78
50308611--50308747	40	3.4	40	82	2	141	17	21	23	37	1.94
50308636--50308742	40	2.7	40	88	4	146	15	26	26	31	1.96
50312121--50312158	19	2.0	19	85	10	51	26	2	13	57	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50315689--50315728	19	2.1	19	100	0	80	37	5	10	47	1.59
50317044--50317482	125	3.5	125	91	0	698	33	18	20	28	1.96
50320360--50320410	16	2.8	19	67	27	56	37	0	11	50	1.39
50320326--50320520	102	1.9	102	96	0	363	38	7	9	44	1.65
50320597--50320664	21	3.3	21	85	4	102	26	0	30	42	1.56
50320605--50320667	20	3.1	20	88	2	99	25	0	30	44	1.54
50321219--50321261	18	2.4	18	88	0	59	44	9	27	18	1.80
50321903--50321934	7	4.6	7	100	0	64	56	15	0	28	1.40
50322115--50322155	21	2.0	21	85	9	57	56	7	2	34	1.40
50323142--50323191	11	4.5	11	85	14	68	44	0	34	22	1.53
50325487--50325534	17	2.7	18	81	15	55	37	8	0	54	1.31
50325903--50325937	16	2.2	16	100	0	70	31	17	17	34	1.93
50326954--50326993	20	2.0	20	85	0	53	47	2	10	40	1.50
50327374--50327437	32	2.0	32	100	0	128	43	9	12	34	1.75
50328773--50328824	19	2.6	20	72	6	52	42	17	7	32	1.77
50333882--50333922	20	2.0	20	85	0	55	26	21	17	34	1.95
50334811--50334864	21	2.7	20	82	5	65	38	16	16	27	1.90
50339424--50339461	15	2.4	16	82	8	51	65	5	2	26	1.27
50339891--50339929	17	2.3	17	95	0	69	30	25	17	25	1.97
50344896--50345040	41	3.5	41	97	1	265	28	20	28	22	1.98
50355095--50355136	12	3.4	12	81	15	50	59	0	9	30	1.29
50368440--50368481	12	3.4	12	81	15	50	59	0	9	30	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50371566--50371605	19	2.1	19	85	0	53	72	12	0	15	1.12
50377330--50377362	17	1.9	17	93	0	57	51	6	27	15	1.66
50385191--50385260	26	2.7	26	86	2	86	30	22	25	21	1.99
50391894--50391924	15	2.1	15	93	0	53	48	35	0	16	1.46
50392448--50392518	26	2.7	26	86	4	90	29	22	25	22	1.99
50394054--50394092	13	2.7	14	88	11	53	7	30	0	61	1.24
50394202--50394266	18	3.4	18	67	24	53	18	1	15	64	1.37
50396732--50396796	5	13.0	5	100	0	130	20	0	20	60	1.37
50396808--50396834	13	2.1	13	100	0	54	29	22	0	48	1.51
50402439--50402463	6	4.2	6	100	0	50	16	0	0	84	0.63
50402508--50402547	18	2.2	18	86	8	55	25	0	7	67	1.16
50408350--50408388	3	13.0	3	100	0	78	66	0	0	33	0.92
50411107--50411171	31	2.3	27	80	15	76	44	6	6	43	1.54
50414803--50414835	17	2.0	17	88	5	50	0	24	0	75	0.80
50414796--50414851	9	6.5	8	78	17	51	0	23	1	75	0.90
50419357--50419512	86	1.8	83	85	6	215	35	22	14	27	1.93
50420710--50420744	15	2.4	15	90	4	54	48	0	8	42	1.33
50424686--50424764	4	19.5	4	75	19	67	25	3	0	70	1.03
50424689--50424755	21	3.5	20	78	21	72	22	4	0	73	1.01
50425894--50426082	101	1.8	100	84	9	256	27	14	25	32	1.95
50426685--50426719	15	2.4	15	90	4	54	48	0	8	42	1.33
50426723--50426755	18	1.9	17	88	11	50	30	0	12	57	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50437573--50437599	6	4.5	6	100	0	54	44	0	0	55	0.99
50443423--50443470	20	2.3	21	82	7	62	52	0	0	47	1.00
50444190--50444236	19	2.6	18	83	6	58	48	2	2	46	1.25
50444791--50444881	31	2.9	31	81	3	94	40	9	10	38	1.74
50445939--50445963	13	1.9	13	100	0	50	32	0	4	64	1.12
50447898--50447934	13	2.9	13	81	18	51	43	13	0	43	1.44
50463867--50463914	22	2.2	22	82	14	55	29	18	20	31	1.97
50465774--50466064	67	4.3	67	78	7	306	36	16	19	27	1.93
50465774--50466053	134	2.1	134	99	0	551	37	15	19	26	1.92
50468089--50468125	18	2.1	19	85	10	51	24	5	10	59	1.52
50468099--50468346	123	2.0	123	95	0	442	27	16	13	41	1.86
50472654--50473178	131	4.0	131	90	1	804	24	24	20	30	1.98
50485886--50486235	124	2.8	124	92	0	574	33	21	15	29	1.94
50489889--50490951	533	2.0	533	95	0	1892	44	16	14	24	1.86
50492751--50492905	70	2.2	72	88	5	226	40	4	37	17	1.70
50496576--50496787	111	1.9	111	96	0	388	35	20	22	21	1.96
50501240--50501387	74	2.0	74	100	0	296	36	10	20	32	1.87
50504468--50504557	23	4.0	22	76	13	85	18	6	22	52	1.69
50509447--50509654	91	2.3	91	87	2	292	45	3	4	46	1.41
50509741--50509796	24	2.4	25	79	11	64	39	3	7	50	1.47
50509670--50509874	106	1.9	106	91	3	333	40	3	4	51	1.42
50509781--50509832	15	3.6	15	80	12	56	44	0	1	53	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50509920--50510186	142	1.9	144	96	1	493	47	5	3	43	1.44
50510221--50510325	44	2.5	40	76	15	113	31	29	4	34	1.78
50510219--50510328	45	2.6	44	81	8	131	31	29	5	33	1.80
50510309--50510362	16	3.4	16	94	0	90	33	38	0	27	1.57
50511577--50511705	22	5.5	22	72	16	107	43	0	27	29	1.55
50511541--50511707	73	2.3	73	91	1	264	44	0	26	28	1.58
50512965--50513022	28	2.1	28	96	0	107	58	12	17	12	1.63
50513528--50513567	20	2.0	21	90	5	64	27	0	2	70	1.01
50525328--50525374	23	2.1	23	88	4	69	38	0	17	44	1.48
50527690--50527714	7	3.6	7	100	0	50	84	0	0	16	0.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228