genome.fa.s23.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  137  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41047412--41047594	64	3.1	58	69	20	162	42	2	4	50	1.36
41047628--41047818	61	3.2	61	73	11	230	43	1	4	50	1.30
41047578--41047853	120	2.3	120	98	0	534	43	1	4	51	1.28
41047701--41047754	26	2.1	25	89	3	81	44	0	1	53	1.11
41047399--41047815	222	1.9	220	94	1	744	42	2	4	50	1.35
41047998--41048085	45	2.0	44	84	10	117	38	26	4	30	1.76
41051109--41051155	23	2.0	22	84	15	60	34	2	2	61	1.20
41052074--41052129	16	3.4	16	69	13	51	42	8	0	48	1.34
41052069--41052117	9	5.8	9	72	13	50	46	4	0	48	1.20
41052069--41052133	33	2.0	33	96	0	121	43	7	0	49	1.31
41053682--41053729	21	2.3	21	88	0	69	72	12	8	6	1.26
41057913--41057958	23	2.0	23	83	8	58	56	0	4	39	1.19
41062227--41062335	33	3.3	32	77	14	116	56	4	2	35	1.34
41071106--41071158	23	2.4	22	76	20	56	9	18	1	69	1.25
41071153--41071204	27	1.9	27	88	0	77	7	26	1	63	1.32
41073519--41073557	16	2.4	16	87	8	53	79	0	2	17	0.84
41074628--41074839	40	5.3	40	78	2	239	24	20	27	27	1.99
41074632--41074848	80	2.7	79	87	3	301	24	20	27	27	1.99
41094069--41094280	40	5.3	40	82	7	261	24	20	27	27	1.99
41094069--41094280	80	2.7	80	89	3	329	24	20	27	27	1.99
41102127--41102335	40	5.3	40	80	6	248	24	20	27	27	1.99
41111608--41111649	21	2.0	21	86	13	61	54	4	11	28	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41113344--41113442	41	2.4	41	94	0	171	20	26	7	46	1.76
41118502--41118572	20	3.6	20	73	3	72	8	22	22	46	1.78
41130946--41130981	17	2.1	17	100	0	72	22	27	11	38	1.88
41132228--41132278	23	2.1	26	89	10	81	56	0	0	43	0.99
41132237--41132278	12	3.2	13	80	12	50	59	0	0	40	0.97
41137342--41137380	18	2.2	18	90	4	62	74	2	17	5	1.12
41140896--41140954	26	2.3	26	93	0	100	44	15	11	28	1.82
41148694--41148817	46	2.7	46	92	0	203	40	12	3	44	1.58
41148953--41149012	24	2.6	23	83	2	75	25	13	20	41	1.88
41153509--41153540	16	2.0	16	93	0	55	25	15	0	59	1.36
41153664--41153762	46	2.2	43	81	12	110	33	23	19	24	1.97
41153762--41153883	51	2.4	51	86	8	169	31	29	12	26	1.92
41154977--41155029	23	2.3	23	90	0	88	20	18	26	33	1.96
41158940--41159020	26	3.2	26	63	30	66	23	16	29	30	1.96
41158930--41159065	50	2.7	51	87	4	204	24	16	28	30	1.96
41159076--41159162	45	1.9	45	88	0	129	27	16	21	34	1.95
41163926--41164069	49	2.9	50	74	2	146	31	16	25	26	1.96
41165813--41165876	28	2.3	27	82	12	69	18	1	17	62	1.41
41167752--41167796	23	1.9	24	86	13	67	26	11	11	51	1.71
41169230--41169266	19	1.9	19	94	0	65	35	0	0	64	0.94
41169235--41169276	19	2.2	19	83	8	50	40	0	0	59	0.97
41170246--41170304	31	1.9	31	85	0	82	59	5	6	28	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41170258--41170300	23	1.9	23	90	4	70	58	4	6	30	1.45
41180647--41180683	19	2.0	18	89	5	56	27	8	5	59	1.48
41182318--41182346	2	15.0	2	92	7	51	48	0	0	51	1.00
41182580--41182625	19	2.4	19	92	7	76	47	2	0	50	1.13
41183030--41183098	22	3.3	21	80	12	79	26	1	26	46	1.61
41183030--41183108	41	1.9	42	86	2	115	25	1	25	48	1.59
41183047--41183108	19	3.1	19	78	19	63	25	1	22	50	1.59
41183030--41183150	42	2.9	41	83	3	127	25	0	21	52	1.53
41183096--41183133	19	2.1	18	85	14	51	23	0	10	65	1.23
41183242--41183305	28	2.2	28	88	2	92	42	6	21	29	1.78
41187694--41187810	44	2.7	43	70	9	103	28	29	17	24	1.98
41195545--41195659	44	2.7	43	79	14	137	29	27	16	26	1.97
41200935--41200969	7	5.0	7	100	0	70	42	28	0	28	1.56
41200935--41200978	21	2.1	21	91	0	70	40	27	0	31	1.56
41205524--41205569	18	2.6	18	86	3	58	43	0	2	54	1.12
41205528--41205686	28	5.2	30	68	25	77	42	0	3	53	1.23
41205520--41205599	28	2.9	27	76	12	81	43	0	1	55	1.08
41205407--41205833	120	3.5	120	96	2	793	42	0	4	52	1.26
41206044--41206085	16	2.6	16	88	7	59	23	30	7	38	1.82
41233218--41233317	38	2.6	38	85	4	130	39	5	6	50	1.49
41242737--41242874	66	2.1	66	88	6	201	34	24	4	36	1.75
41253109--41253142	7	5.0	7	85	7	52	14	11	0	73	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41253122--41253225	51	2.1	49	80	10	113	28	15	8	47	1.75
41263445--41263483	5	7.6	5	86	13	53	79	2	0	17	0.84
41263467--41263663	75	2.6	75	85	1	252	61	8	15	14	1.56
41275700--41275737	6	6.3	6	100	0	76	52	15	0	31	1.43
41275981--41276046	31	2.1	31	88	0	96	34	13	10	40	1.79
41277356--41277398	22	2.0	22	95	4	79	39	4	4	51	1.44
41279118--41279146	5	5.8	5	100	0	58	0	58	0	41	0.98
41281677--41281734	26	2.2	26	82	11	66	56	3	8	31	1.46
41282250--41282452	23	8.7	24	72	12	111	38	20	13	27	1.90
41282265--41282521	70	3.7	70	82	3	266	41	17	14	26	1.88
41282323--41282519	23	8.5	23	73	4	171	42	16	16	25	1.88
41282303--41282521	70	3.1	70	84	2	269	41	17	15	26	1.88
41282318--41282519	47	4.3	46	74	7	165	43	15	15	25	1.87
41283237--41283390	28	5.5	28	92	0	245	32	25	11	30	1.91
41284712--41284877	20	8.2	20	73	6	131	12	30	18	37	1.88
41286332--41286358	5	5.4	5	100	0	54	0	0	18	81	0.69
41296352--41296383	13	2.5	13	100	0	64	12	6	0	81	0.87
41299564--41299603	20	2.0	20	95	0	71	47	42	0	10	1.37
41300197--41300225	9	3.3	9	90	9	51	75	0	0	24	0.80
41303408--41303464	28	2.0	28	96	0	105	35	17	19	28	1.94
41306453--41306615	43	3.8	42	81	3	164	27	26	19	26	1.99
41306453--41306615	86	1.9	86	85	2	229	27	26	19	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41307309--41307360	23	2.3	23	79	0	59	34	7	30	26	1.85
41309212--41309240	12	2.3	13	94	5	51	24	0	0	75	0.80
41311590--41311628	18	2.2	18	85	0	51	61	2	23	12	1.43
41315406--41315444	18	2.2	18	85	0	51	61	2	23	12	1.43
41318065--41318131	31	2.2	31	94	0	116	50	8	20	19	1.74
41319729--41319791	26	2.4	26	89	0	90	34	41	6	17	1.75
41320618--41320910	41	7.1	41	86	0	370	31	27	22	18	1.97
41320646--41320904	124	2.1	123	87	0	365	31	29	22	16	1.96
41322053--41322249	41	4.8	41	93	3	283	26	19	23	29	1.98
41322053--41322278	82	2.8	80	84	8	285	26	20	23	28	1.99
41322063--41322289	123	1.8	123	82	10	295	26	19	24	29	1.99
41329211--41329407	41	4.8	41	92	3	283	26	19	24	29	1.98
41329211--41329436	82	2.8	80	84	8	285	26	19	24	29	1.99
41329221--41329447	123	1.8	123	82	10	295	26	19	24	29	1.98
41330537--41330630	39	2.4	40	85	7	122	21	15	20	42	1.89
41332684--41332738	24	2.4	23	93	6	94	38	7	3	50	1.48
41336200--41336256	29	2.0	29	100	0	114	17	21	29	31	1.96
41337215--41337328	34	3.3	34	79	8	104	40	16	7	35	1.78
41337497--41337767	41	6.6	41	89	1	409	24	27	18	29	1.98
41338161--41338207	23	2.0	23	95	0	85	42	29	2	25	1.67
41346569--41346763	51	3.8	51	80	7	218	24	17	28	29	1.97
41357389--41357615	40	5.7	40	95	1	384	21	26	21	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41357389--41357615	119	1.9	120	93	0	393	21	26	21	30	1.98
41357389--41357615	79	2.8	80	93	1	384	21	26	21	30	1.98
41360310--41360432	50	2.5	50	77	2	133	29	22	26	21	1.99
41370921--41371016	42	2.3	43	81	1	113	21	20	23	33	1.97
41373096--41373138	21	2.0	22	86	4	61	39	0	4	55	1.20
41373169--41373208	20	2.0	20	95	0	71	52	35	0	12	1.39
41373950--41374048	50	2.0	49	84	5	128	29	14	11	45	1.79
41376876--41376924	18	2.7	18	87	0	71	57	18	10	14	1.65
41381117--41381157	13	3.2	13	75	25	50	0	31	21	46	1.52
41391977--41392025	2	24.5	2	100	0	98	51	0	48	0	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228