genome.fa.s23.2.7.7.80.10.50.1000.217.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  217  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63642133--63642162	3	10.0	3	92	0	51	30	0	3	66	1.07
63643495--63643700	108	1.9	108	91	4	335	36	17	16	29	1.92
63646277--63646391	44	2.6	44	85	0	158	32	20	17	29	1.96
63646318--63646521	88	2.3	88	84	0	291	26	19	20	33	1.96
63646571--63646829	50	5.2	50	73	4	200	27	22	18	30	1.97
63646571--63646861	100	2.9	99	82	4	318	28	22	19	29	1.98
63646953--63647399	45	10.0	45	78	6	462	21	24	25	28	1.99
63646966--63647399	90	4.8	88	85	4	514	21	24	26	27	1.99
63646953--63647399	135	3.3	135	80	5	521	21	24	25	28	1.99
63648146--63648506	180	2.0	180	97	0	686	40	13	17	28	1.88
63650844--63650877	17	2.0	17	100	0	68	35	17	29	17	1.93
63651149--63651271	63	1.9	64	95	1	221	42	14	18	24	1.88
63651149--63651292	64	2.3	63	90	1	216	41	13	20	25	1.88
63655909--63655949	11	3.8	11	83	6	57	21	43	4	29	1.73
63656481--63656567	18	4.8	18	85	0	120	29	22	14	32	1.94
63660245--63660287	11	4.0	11	84	6	61	20	46	4	27	1.71
63660244--63660286	21	2.0	21	90	4	68	20	46	2	30	1.63
63666694--63666738	22	2.0	22	100	0	90	44	0	13	42	1.43
63666906--63666977	28	2.6	28	84	8	85	44	0	4	51	1.20
63667139--63667173	18	2.0	17	94	5	61	48	0	0	51	1.00
63667335--63667429	45	2.1	45	88	1	138	32	27	5	34	1.79
63667410--63667461	16	3.2	16	94	0	86	34	36	0	28	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63668229--63668262	17	1.9	17	88	5	50	47	5	14	32	1.69
63680524--63680617	31	3.1	31	75	14	97	48	4	2	44	1.34
63680523--63680617	30	3.2	30	77	8	95	48	4	2	45	1.33
63687124--63687199	29	2.6	29	89	0	107	36	7	3	51	1.50
63687596--63687620	13	1.9	13	100	0	50	28	0	24	48	1.52
63701022--63701073	22	2.3	23	86	6	70	28	25	0	46	1.53
63708429--63708477	20	2.4	20	79	3	53	18	10	12	59	1.60
63712588--63712666	31	2.6	30	82	11	90	41	1	2	54	1.22
63712588--63712678	31	3.0	31	82	7	80	41	2	3	52	1.30
63719602--63719627	8	3.2	8	100	0	52	0	53	0	46	1.00
63719767--63719804	4	9.8	4	82	5	51	21	0	2	76	0.91
63719842--63719879	15	2.6	15	91	4	60	15	5	5	73	1.19
63720649--63720675	14	1.9	14	100	0	54	25	29	14	29	1.95
63721483--63721528	16	2.7	18	76	10	51	17	2	10	69	1.27
63721471--63721531	12	5.3	12	72	18	58	16	1	8	73	1.14
63726323--63726469	33	4.4	33	72	7	109	28	23	14	33	1.94
63726243--63726501	101	2.6	100	83	3	317	27	23	16	32	1.96
63727815--63727867	23	2.5	20	75	24	54	64	1	11	22	1.36
63728015--63728039	3	8.3	3	100	0	50	68	0	0	32	0.90
63729106--63729134	7	4.1	7	100	0	58	86	0	0	13	0.58
63731207--63731294	43	2.0	43	100	0	176	43	13	22	20	1.87
63732232--63732261	15	2.0	15	100	0	60	46	0	6	46	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63734131--63734160	15	2.0	15	100	0	60	46	6	0	46	1.29
63735098--63735185	43	2.0	43	100	0	176	20	22	13	43	1.87
63738359--63738383	3	8.3	3	100	0	50	32	0	0	68	0.90
63738529--63738583	23	2.5	21	78	21	60	23	10	1	63	1.36
63739933--63740075	33	4.3	34	67	11	89	33	15	23	27	1.95
63739897--63740155	101	2.6	100	83	4	317	32	16	23	27	1.96
63744864--63744924	12	5.3	12	74	18	58	73	8	1	16	1.14
63745359--63745424	29	2.3	29	100	0	132	37	18	18	25	1.93
63745934--63745971	15	2.6	15	91	4	60	73	5	5	15	1.19
63746009--63746046	8	4.9	8	87	3	51	76	5	0	18	0.97
63746186--63746211	8	3.2	8	100	0	52	46	0	53	0	1.00
63753136--63753209	31	2.4	31	82	8	89	52	2	2	41	1.29
63753148--63753226	31	2.6	31	84	7	92	54	2	1	41	1.22
63758849--63758910	26	2.4	25	74	10	63	40	0	3	56	1.15
63759428--63759452	12	2.1	12	100	0	50	24	36	24	16	1.94
63759613--63759667	9	6.2	8	89	10	65	40	25	10	23	1.87
63759613--63759667	18	3.1	17	87	7	74	40	25	10	23	1.87
63759613--63759664	27	1.9	27	88	7	79	38	26	9	25	1.86
63765294--63765365	37	1.9	37	83	10	94	58	6	5	29	1.47
63766936--63767733	44	18.6	44	70	10	268	26	21	19	31	1.98
63766924--63767085	87	1.9	87	82	2	209	25	24	20	30	1.99
63767052--63767518	257	1.8	257	92	0	799	27	22	19	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63767266--63767687	171	2.5	170	92	1	695	26	20	20	32	1.97
63773137--63773351	39	5.5	39	94	0	367	26	29	26	16	1.97
63782779--63782835	21	2.7	21	88	0	87	10	15	28	45	1.79
63782918--63783052	43	3.1	43	90	1	198	30	23	18	27	1.98
63782916--63783082	43	3.9	43	85	6	117	31	23	18	26	1.98
63782916--63783114	86	2.3	85	81	7	208	33	25	16	25	1.96
63783464--63783548	43	2.0	43	83	0	107	44	9	12	32	1.75
63786953--63787016	15	4.1	15	72	11	58	64	9	3	23	1.38
63788380--63788756	96	3.8	98	85	3	393	22	21	23	32	1.98
63788567--63788743	49	3.7	49	71	6	162	19	22	26	31	1.98
63788466--63788756	96	3.0	96	87	2	395	22	21	24	31	1.98
63802199--63802237	13	2.9	13	88	3	51	76	5	12	5	1.11
63807227--63807346	20	6.0	20	74	3	98	14	31	18	35	1.90
63817556--63817589	16	2.3	14	90	10	50	67	0	29	2	1.05
63822631--63822961	181	1.8	181	92	0	554	22	20	18	38	1.94
63826547--63826729	71	2.6	71	82	0	204	29	18	20	31	1.96
63836798--63836911	52	2.2	52	95	0	201	33	14	23	28	1.94
63836899--63837055	37	4.2	37	96	0	287	38	15	19	26	1.92
63855441--63855532	40	2.2	43	84	7	127	36	7	0	55	1.29
63855441--63855532	42	2.2	42	82	7	116	36	7	0	55	1.29
63855665--63855703	16	2.4	17	87	12	55	20	0	5	74	1.01
63858576--63858650	26	2.8	27	86	8	109	16	25	38	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63858727--63858809	39	2.2	38	93	2	139	39	2	2	55	1.26
63858843--63858964	60	2.0	60	84	3	156	53	14	0	31	1.47
63858939--63858990	21	2.4	21	81	9	61	55	9	0	34	1.32
63858979--63859069	8	10.4	8	69	17	56	48	15	1	35	1.52
63859005--63859433	22	21.2	19	77	15	293	55	13	1	30	1.47
63859005--63859110	27	4.1	27	84	11	150	50	12	1	34	1.51
63859059--63859431	41	9.0	41	80	11	374	55	13	1	29	1.47
63859032--63859431	63	6.3	64	78	14	397	55	13	1	29	1.47
63859080--63859431	22	17.0	21	82	10	356	55	13	1	29	1.48
63859223--63859450	122	1.9	120	89	4	359	55	13	0	29	1.44
63859212--63859460	61	4.1	60	72	14	181	55	14	0	29	1.45
63859500--63859525	12	2.2	12	100	0	52	46	15	0	38	1.46
63862107--63862146	21	2.0	20	85	5	53	45	2	0	52	1.14
63864307--63864342	17	2.1	18	89	5	56	36	2	33	27	1.72
63876323--63876357	17	1.9	18	88	11	54	54	0	0	45	0.99
63882759--63882784	7	3.7	7	100	0	52	38	0	0	61	0.96
63882770--63882804	18	1.9	18	88	11	54	40	0	5	54	1.24
63889410--63889458	19	2.4	21	80	16	59	32	4	0	63	1.13
63890508--63890539	15	2.2	15	94	5	57	31	0	0	68	0.90
63891162--63891206	22	2.1	21	92	8	74	26	4	0	68	1.08
63894235--63894269	14	2.4	14	90	4	52	68	0	0	31	0.90
63899314--63899395	30	2.7	30	90	0	128	24	21	6	47	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63899339--63899389	15	3.4	15	68	10	50	23	19	7	49	1.74
63903981--63904062	30	2.7	30	90	0	128	25	21	6	46	1.74
63903981--63904056	15	5.1	15	68	10	57	26	21	6	46	1.75
63921904--63922192	49	6.0	49	91	4	464	28	30	8	32	1.88
63921904--63922192	96	3.0	96	93	2	474	28	30	8	32	1.88
63935049--63935090	20	2.1	20	95	0	75	38	11	19	30	1.88
63935099--63935129	15	2.1	15	100	0	62	22	12	25	38	1.90
63939772--63939813	20	2.1	20	95	0	75	38	11	19	30	1.88
63939822--63939852	15	2.1	15	100	0	62	22	12	25	38	1.90
63943014--63943064	17	3.1	16	81	16	59	35	0	0	64	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228