genome.fa.s23.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  114  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33320041--33320097	5	11.2	5	83	10	64	17	1	1	78	0.91
33320041--33320097	6	10.0	6	86	5	59	17	1	1	78	0.91
33322863--33322918	25	2.4	22	78	16	67	21	14	48	16	1.81
33322869--33322922	25	2.2	25	93	0	90	22	12	48	16	1.80
33323039--33323084	24	1.9	24	90	0	74	32	4	36	26	1.76
33329667--33329765	49	2.0	49	98	0	189	25	20	9	45	1.80
33330954--33331015	27	2.3	26	88	2	88	46	19	17	16	1.84
33332516--33332837	99	3.4	93	86	10	424	31	30	18	19	1.96
33332752--33332793	20	2.0	22	86	13	61	33	33	21	11	1.90
33367628--33367672	24	1.9	23	86	4	63	17	44	2	35	1.62
33380379--33380434	28	2.0	29	92	3	96	41	28	12	17	1.86
33418938--33419006	7	9.9	7	98	0	129	14	13	1	71	1.23
33423570--33423623	25	2.2	25	86	0	72	24	11	46	18	1.81
33423985--33424014	15	2.0	15	93	0	51	33	40	10	16	1.82
33425115--33425193	27	2.9	27	90	0	131	43	21	16	18	1.88
33430812--33430910	49	2.0	49	100	0	198	26	20	8	45	1.78
33432099--33432158	27	2.2	27	85	5	77	48	18	13	20	1.81
33451303--33451453	27	5.6	27	85	3	160	27	15	28	28	1.96
33451302--33451453	55	2.8	54	83	4	171	27	15	28	28	1.96
33451303--33451453	82	1.8	82	81	2	187	27	15	28	28	1.96
33458985--33459163	27	6.6	27	83	3	207	27	15	27	29	1.96
33458986--33459141	82	1.9	81	88	3	233	26	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33458982--33459163	82	2.2	81	83	2	231	27	15	27	29	1.96
33461163--33461197	18	1.9	18	88	0	52	57	22	0	20	1.41
33474406--33474598	50	3.7	50	77	6	199	23	29	21	26	1.99
33475335--33475415	30	2.7	30	92	0	117	32	19	20	27	1.97
33480689--33480723	3	11.7	3	93	0	61	37	0	28	34	1.58
33481854--33481924	9	7.3	9	75	12	61	53	1	1	43	1.18
33481860--33481920	20	3.0	20	80	7	61	49	1	1	47	1.21
33481843--33481924	30	2.7	30	88	3	112	52	1	3	42	1.26
33485814--33485878	18	3.8	18	86	8	91	44	0	1	53	1.09
33486106--33486143	11	3.6	11	82	10	53	36	0	2	60	1.11
33486152--33486193	16	2.4	18	84	11	61	14	9	0	76	1.02
33491293--33491390	39	2.5	39	81	4	110	38	5	9	46	1.58
33497268--33497329	30	2.1	30	96	0	115	48	12	4	33	1.63
33503313--33503341	14	2.1	14	100	0	58	20	34	6	37	1.80
33508054--33508176	50	2.5	50	82	0	147	33	23	17	26	1.96
33514110--33514143	16	2.1	16	88	0	50	35	11	11	41	1.78
33519989--33520135	73	2.0	73	94	0	258	42	21	12	23	1.87
33520518--33520803	146	2.0	144	88	2	421	32	19	9	38	1.84
33523722--33523985	40	6.6	39	83	6	266	26	27	20	25	1.99
33531777--33532012	40	5.9	40	89	5	311	25	27	22	25	2.00
33536495--33536540	24	1.9	24	91	8	76	39	21	6	32	1.79
33539756--33539789	17	2.0	17	100	0	68	23	17	5	52	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33544109--33544286	27	6.6	27	83	3	205	26	15	28	29	1.96
33544110--33544265	82	1.9	81	88	3	233	26	15	28	29	1.96
33544106--33544286	82	2.2	81	83	2	229	27	15	27	29	1.96
33552147--33552324	27	6.6	27	83	3	205	26	15	28	29	1.96
33552148--33552303	82	1.9	81	88	3	233	26	15	28	29	1.96
33552144--33552324	82	2.2	81	83	2	229	27	15	27	29	1.96
33556873--33556910	13	2.9	13	88	0	58	39	0	7	52	1.31
33559047--33559091	17	2.6	17	82	0	54	11	4	2	82	0.91
33559044--33559096	23	2.3	24	80	9	65	11	7	1	79	1.01
33576505--33576682	27	6.6	27	83	3	205	26	15	28	29	1.96
33576506--33576661	82	1.9	81	88	3	233	26	15	28	29	1.96
33576502--33576682	82	2.2	81	83	2	229	27	15	27	29	1.96
33587196--33587491	39	7.6	39	85	3	400	44	21	3	31	1.68
33587202--33587491	117	2.5	117	91	0	474	44	21	3	30	1.69
33592728--33592767	18	2.2	18	100	0	80	57	22	0	20	1.41
33594408--33594533	57	2.2	57	84	5	166	45	13	18	23	1.84
33594751--33594795	18	2.5	18	85	7	56	33	13	6	46	1.69
33594778--33594809	15	2.2	15	94	5	57	37	3	6	53	1.42
33599016--33599059	21	2.1	21	100	0	88	63	18	4	13	1.46
33602047--33602169	57	2.2	58	85	8	173	48	16	14	20	1.80
33602381--33602429	18	2.8	17	87	3	62	32	12	6	48	1.65
33602412--33602443	15	2.2	15	94	5	57	37	3	6	53	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33604460--33604502	23	1.9	23	95	4	79	48	9	11	30	1.71
33604528--33604561	16	2.1	16	89	10	52	44	0	17	38	1.49
33604528--33604565	15	2.4	17	83	16	55	44	0	18	36	1.50
33611026--33611097	36	2.0	36	94	0	126	30	13	33	22	1.93
33619656--33619696	3	13.7	3	100	0	82	31	0	0	68	0.90
33623750--33623842	35	2.6	35	83	5	107	18	12	29	39	1.88
33624568--33624615	18	2.6	18	83	6	60	50	2	4	43	1.33
33635900--33636287	47	8.1	47	93	2	607	30	8	31	29	1.87
33636406--33636484	37	2.1	37	88	0	113	24	17	31	26	1.97
33638339--33638441	43	2.4	43	100	0	206	22	15	35	26	1.94
33638425--33638496	29	2.5	29	86	4	92	27	16	30	25	1.97
33638807--33638949	40	3.6	39	81	10	139	25	22	27	23	1.99
33638924--33639120	40	4.9	40	88	2	252	24	20	27	26	1.99
33642422--33642522	49	2.1	49	100	0	202	32	7	28	30	1.86
33642499--33642539	17	2.4	17	95	4	73	36	0	24	39	1.56
33642450--33642588	66	2.1	66	97	1	260	33	5	28	33	1.81
33642517--33642826	47	6.5	49	91	3	469	30	8	31	29	1.87
33642422--33642631	115	1.8	115	97	0	402	31	7	29	31	1.85
33642947--33643025	37	2.1	37	88	0	113	24	17	31	26	1.97
33652787--33652853	14	4.9	14	78	10	75	41	1	26	29	1.65
33652804--33652847	20	2.2	20	87	0	61	43	2	25	29	1.67
33652788--33652853	7	9.6	7	77	9	55	40	1	27	30	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33654046--33654083	20	1.9	20	88	0	58	21	28	28	21	1.98
33664173--33664313	31	4.6	31	70	11	119	37	19	13	29	1.90
33665195--33666679	498	3.0	498	99	0	2943	29	20	15	35	1.93
33669520--33669565	25	1.9	23	86	8	65	73	0	8	17	1.07
33682509--33682543	10	3.4	10	88	4	52	20	5	0	74	1.02
33685530--33685760	29	8.0	29	77	6	175	22	26	13	36	1.92
33685534--33685755	88	2.5	86	79	5	239	22	27	13	36	1.92
33694684--33694719	18	2.1	17	89	5	54	11	0	16	72	1.12
33698680--33698709	15	2.1	15	93	6	53	6	26	0	66	1.16
33700564--33700593	2	14.5	2	93	6	51	50	0	3	46	1.18
33702769--33702836	18	3.7	18	81	15	68	64	0	0	35	0.94
33703220--33703265	3	15.7	3	95	4	85	0	34	0	65	0.93
33703282--33703350	35	2.0	35	91	2	113	36	15	10	37	1.82
33710610--33710677	33	2.1	33	91	0	109	32	10	33	23	1.88
33715446--33715487	3	14.0	3	100	0	84	33	0	0	66	0.92
33715785--33715809	13	1.9	13	100	0	50	24	4	16	56	1.57
33716813--33716876	17	3.6	17	74	15	67	26	12	14	46	1.79
33716805--33716875	36	2.0	36	97	0	133	25	12	15	46	1.81
33716804--33716860	19	3.1	19	71	19	66	26	12	15	45	1.82
33717069--33717165	48	2.0	49	88	6	144	19	13	22	44	1.86
33721942--33722005	17	3.6	17	72	15	58	28	12	12	46	1.78
33721934--33722004	36	2.0	36	94	0	124	26	12	14	46	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33721933--33721989	19	3.1	19	71	19	66	26	12	15	45	1.82
33737491--33737519	8	3.6	8	100	0	58	75	0	0	24	0.80
33737665--33737760	48	2.0	48	100	0	192	33	16	10	39	1.83
33739533--33739575	19	2.2	20	84	12	63	32	18	0	48	1.48
33739648--33739741	44	2.1	45	88	2	136	36	22	17	24	1.95
33742476--33742503	8	3.5	8	100	0	56	75	0	0	25	0.81
33754915--33754974	27	2.2	27	81	0	75	10	15	43	31	1.79
33771773--33771949	50	3.5	50	84	4	212	35	15	12	37	1.85
33772702--33772753	24	2.1	24	82	3	59	76	1	7	13	1.07
33772716--33772776	30	2.1	30	87	6	90	72	1	9	16	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228