genome.fa.s23.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  124  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36597236--36597517	84	3.2	84	75	17	322	48	5	4	41	1.46
36597347--36597379	15	2.2	15	94	0	57	54	3	3	39	1.31
36597236--36597622	177	2.2	177	98	0	747	49	5	4	40	1.46
36597524--36597556	15	2.2	15	94	0	57	54	3	3	39	1.31
36599571--36599623	23	2.3	23	83	9	63	35	3	41	18	1.69
36599566--36599620	24	2.4	22	77	16	58	40	3	40	16	1.66
36600158--36600210	22	2.5	22	96	3	99	37	26	3	32	1.74
36600171--36600248	15	5.4	14	72	7	57	39	29	1	29	1.65
36600174--36600252	29	2.7	30	80	7	83	39	27	2	30	1.70
36600805--36601611	266	3.1	266	90	4	1296	28	20	18	32	1.96
36602195--36602394	41	4.9	41	88	2	287	22	21	27	29	1.99
36603326--36603424	7	14.7	7	73	12	57	21	0	39	39	1.53
36603354--36603432	21	3.9	21	76	15	76	25	0	32	41	1.56
36604621--36604666	21	2.2	21	84	7	58	23	50	2	23	1.61
36604622--36604666	22	2.1	21	83	4	54	24	51	2	22	1.60
36613638--36614036	134	3.0	133	95	0	708	27	19	22	30	1.98
36613961--36614104	42	3.2	42	68	19	126	27	23	20	28	1.99
36613938--36614131	95	2.0	95	97	0	370	29	19	21	28	1.98
36613804--36614265	229	2.0	229	96	0	861	28	19	22	29	1.98
36614033--36614945	134	6.8	134	97	0	1736	27	19	22	30	1.98
36613670--36614399	363	2.0	363	96	0	1334	28	19	22	29	1.98
36617599--36617949	132	2.7	132	75	7	347	29	17	16	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36620504--36620647	43	3.3	43	83	4	157	25	19	26	29	1.99
36620463--36620657	43	4.5	43	77	6	153	26	18	27	27	1.98
36624987--36625050	10	6.5	10	71	15	53	62	3	0	34	1.11
36625019--36625061	18	2.2	20	88	12	63	58	6	0	34	1.25
36628356--36628435	36	2.2	36	84	0	106	32	15	25	27	1.95
36628271--36628617	104	3.3	104	77	5	308	31	14	23	29	1.95
36639549--36639582	17	2.1	17	88	5	52	76	11	0	11	1.02
36643853--36643999	9	15.1	9	67	24	59	29	4	2	63	1.26
36643853--36644001	20	7.7	19	66	14	72	30	4	2	63	1.26
36643889--36643998	30	3.7	29	75	11	98	29	5	1	63	1.27
36643991--36644040	20	2.5	20	78	12	66	44	2	0	54	1.11
36644737--36644788	27	1.9	27	84	0	68	30	5	11	51	1.61
36648784--36648901	50	2.3	50	85	5	148	33	16	13	36	1.88
36651153--36651192	13	3.2	13	86	6	57	27	5	15	52	1.63
36660672--36660729	27	2.1	27	83	0	71	25	29	10	34	1.89
36670861--36670914	24	2.2	26	78	18	62	48	0	0	51	1.00
36674258--36674302	22	2.2	20	88	8	63	48	8	20	22	1.76
36674579--36674615	19	2.0	18	94	5	65	32	0	0	67	0.91
36675761--36675803	19	2.2	20	88	12	63	53	6	0	39	1.28
36679108--36679138	14	2.2	14	100	0	62	22	6	22	48	1.73
36686391--36686421	11	2.8	11	100	0	62	45	16	19	19	1.86
36686923--36686954	17	1.9	16	93	6	55	25	18	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36690468--36690546	38	2.1	37	86	6	106	26	30	17	25	1.97
36690665--36691092	47	9.2	47	90	5	665	28	30	9	32	1.88
36690665--36691092	96	4.6	94	91	5	665	28	30	9	32	1.88
36709829--36710018	95	2.0	93	86	4	265	31	20	14	33	1.93
36715162--36715533	190	2.0	190	89	2	568	30	16	16	36	1.91
36723812--36723989	27	6.6	27	82	3	196	26	15	27	30	1.96
36723813--36723968	82	1.9	81	86	3	224	26	15	27	30	1.96
36723809--36723989	82	2.2	81	82	2	220	27	15	27	30	1.96
36733842--36733873	11	2.9	11	100	0	64	65	6	0	28	1.16
36734149--36734192	22	2.0	22	100	0	88	36	22	9	31	1.86
36739676--36739714	18	2.1	19	90	4	62	61	0	5	33	1.18
36752470--36752500	15	2.1	15	100	0	62	25	6	12	54	1.62
36754276--36754425	55	2.7	56	86	3	169	26	13	28	32	1.94
36754301--36754438	28	5.0	27	91	3	188	28	13	26	32	1.93
36754301--36754425	55	2.3	55	90	2	189	27	13	28	31	1.94
36765471--36765546	37	2.1	37	89	0	116	26	32	18	22	1.97
36765668--36766175	93	5.5	94	88	3	742	29	31	8	30	1.87
36765948--36766263	138	2.5	116	70	26	284	31	30	7	30	1.85
36765668--36766185	47	11.2	47	91	3	766	29	31	8	30	1.87
36769588--36769691	40	2.6	40	84	0	118	25	29	21	24	1.99
36769681--36769854	40	4.4	39	84	5	206	24	26	19	29	1.98
36769681--36769862	80	2.3	80	84	5	251	24	26	19	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36770207--36770285	29	2.7	29	82	5	97	27	32	16	22	1.96
36770267--36770414	43	3.4	43	99	0	287	27	35	14	22	1.94
36770397--36770472	29	2.6	29	89	4	109	25	32	15	26	1.95
36770454--36770556	43	2.4	43	100	0	206	26	35	15	22	1.94
36770212--36770556	187	1.8	187	99	0	681	26	33	15	24	1.95
36772412--36772487	37	2.1	37	89	0	116	26	32	18	22	1.97
36772608--36773107	47	10.6	47	92	1	739	30	30	8	31	1.86
36781875--36781921	20	2.3	20	81	0	58	23	12	34	29	1.92
36782648--36782709	5	12.0	5	74	19	56	3	19	1	75	1.02
36782648--36782716	16	4.6	14	74	15	57	2	18	2	75	1.06
36782650--36782719	36	1.9	37	86	13	101	2	18	2	75	1.05
36783654--36783679	12	2.2	12	100	0	52	15	0	7	76	0.99
36785187--36785233	20	2.3	20	81	0	58	23	12	34	29	1.92
36787426--36787472	20	2.3	20	81	0	58	23	12	34	29	1.92
36787883--36787955	36	2.0	36	100	0	146	42	21	24	10	1.85
36795074--36795296	40	5.6	40	86	3	236	24	21	27	26	1.99
36795149--36795331	79	2.3	80	82	1	226	25	20	27	25	1.99
36808877--36808930	14	3.8	14	76	11	56	1	22	1	74	1.02
36811011--36811051	12	3.7	11	84	9	57	14	2	4	78	1.03
36811010--36811051	11	3.7	12	81	9	52	14	2	4	78	1.01
36818104--36818158	15	3.8	15	80	2	60	3	20	1	74	1.06
36820181--36820215	17	2.1	17	88	0	52	25	8	5	60	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36823110--36823167	10	5.7	10	76	11	64	29	27	13	29	1.94
36823110--36823169	20	3.0	20	83	9	77	28	26	13	31	1.94
36825333--36825380	20	2.4	20	67	0	51	33	18	27	20	1.96
36827052--36827157	48	2.2	48	85	9	137	14	24	1	59	1.45
36827133--36827232	18	5.4	17	71	13	56	14	27	3	56	1.53
36828191--36828222	12	2.7	12	100	0	64	12	0	6	81	0.87
36828315--36828343	10	2.7	11	94	5	51	6	3	6	82	0.93
36829739--36829786	20	2.4	20	67	0	51	33	18	27	20	1.96
36840126--36840172	20	2.3	20	81	0	58	29	34	12	23	1.92
36841707--36841741	9	3.8	9	88	3	52	85	2	8	2	0.79
36841707--36841750	21	2.1	21	86	0	61	81	2	11	4	0.92
36844591--36844618	4	7.0	4	100	0	56	25	0	0	75	0.81
36847310--36847362	23	2.4	22	76	20	56	9	18	1	69	1.25
36849728--36849767	6	6.3	6	83	11	53	85	0	0	15	0.61
36850020--36850066	20	2.3	20	85	0	67	29	36	12	21	1.91
36854603--36854642	18	2.2	18	86	4	53	12	27	0	60	1.33
36854718--36854777	18	3.2	18	77	15	59	8	20	3	68	1.30
36857266--36857317	13	4.0	13	87	7	79	25	11	0	63	1.28
36857266--36857317	27	2.0	26	92	3	86	25	11	0	63	1.28
36857355--36857401	12	3.8	12	86	5	67	12	6	10	70	1.33
36857355--36857398	13	3.5	13	90	6	72	11	4	9	75	1.19
36859408--36859585	27	6.6	27	82	3	196	26	15	27	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36859409--36859564	82	1.9	81	86	3	224	26	16	27	29	1.96
36859405--36859585	82	2.2	81	82	2	220	27	16	27	29	1.96
36869432--36869480	21	2.2	22	85	7	64	6	20	2	71	1.18
36870406--36870474	33	2.1	32	84	7	86	4	14	4	76	1.09
36870454--36870515	13	4.5	13	76	9	61	16	8	3	72	1.21
36873349--36873526	27	6.6	27	83	3	205	26	15	28	29	1.96
36873350--36873505	82	1.9	81	88	3	233	26	15	28	29	1.96
36873346--36873526	82	2.2	81	83	2	229	27	15	27	29	1.96
36877684--36877724	17	2.4	18	80	8	50	14	24	4	56	1.58
36877732--36877762	12	2.6	12	94	0	53	6	22	0	70	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228