genome.fa.s23.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  36  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10965545--10965631	42	2.1	42	93	0	147	47	14	8	29	1.73
10970518--10970562	22	2.0	23	82	8	56	28	2	11	57	1.45
10981993--10982052	25	2.3	26	88	5	95	23	25	25	26	2.00
10985451--10985481	15	2.1	14	94	5	53	80	0	19	0	0.71
10987222--10987269	6	8.0	6	100	0	96	16	0	33	50	1.46
10988985--10989010	5	5.2	5	100	0	52	23	19	19	38	1.93
10993736--10993766	2	15.5	2	93	0	53	48	0	48	3	1.17
10998277--10998548	136	2.0	136	94	0	472	35	16	20	27	1.94
10999539--10999589	23	2.2	23	82	6	68	47	31	0	21	1.51
11000405--11000549	46	3.2	45	81	6	159	20	20	13	45	1.85
11000529--11000685	45	3.5	45	84	5	185	24	19	17	38	1.92
11000673--11000773	45	2.2	45	92	0	166	16	20	20	41	1.90
11000523--11000733	90	2.3	89	78	6	210	22	20	18	38	1.93
11001664--11001729	23	2.8	24	80	13	75	36	0	1	62	1.05
11001664--11001716	24	2.2	23	86	6	70	32	0	1	66	1.03
11010829--11010873	24	1.9	24	86	4	65	20	0	26	53	1.46
11015420--11015459	14	2.6	16	88	11	57	60	2	0	37	1.11
11015489--11015536	9	5.6	9	85	12	57	68	6	2	22	1.23
11015489--11015537	17	2.9	17	85	14	66	69	6	2	22	1.21
11031542--11031583	15	2.6	16	82	17	52	61	2	0	35	1.09
11031541--11031587	17	2.8	16	83	6	58	63	2	0	34	1.06
11043998--11044090	48	2.0	47	89	6	143	18	25	21	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11046102--11046128	6	4.5	6	100	0	54	0	14	33	51	1.43
11050841--11050902	30	2.3	27	81	18	67	32	4	1	61	1.27
11051728--11051775	21	2.3	21	78	7	53	33	6	12	47	1.66
11055013--11055075	29	2.2	29	80	5	74	46	6	12	34	1.68
11057141--11057232	22	4.0	22	67	25	64	44	1	1	53	1.15
11067543--11067585	11	4.0	11	82	11	54	18	30	0	51	1.47
11067556--11067600	20	2.2	20	84	7	56	24	26	0	48	1.51
11067567--11067687	51	2.4	51	84	5	158	30	21	1	46	1.61
11068801--11068846	7	6.6	7	97	0	83	26	0	13	60	1.32
11068801--11068852	21	2.5	21	90	0	86	26	0	13	59	1.34
11069497--11069536	18	2.2	18	95	0	71	22	30	5	42	1.75
11069961--11070507	25	22.9	25	67	20	219	39	0	13	46	1.46
11069966--11070361	71	5.6	71	96	1	735	38	0	13	47	1.42
11070248--11070507	121	2.1	121	94	0	475	41	0	14	43	1.49
11070512--11070601	23	3.9	23	91	0	144	46	21	4	27	1.70
11072551--11072791	125	1.9	125	89	3	378	32	21	16	29	1.95
11077254--11077316	29	2.1	29	81	16	76	53	1	9	34	1.43
11077256--11077316	30	2.0	30	84	12	81	52	1	9	36	1.45
11077784--11077861	22	3.5	22	85	1	111	30	26	0	42	1.56
11078048--11078078	15	2.1	15	93	0	53	29	0	6	64	1.18
11080220--11080922	29	23.9	29	88	3	987	46	29	0	23	1.54
11080921--11081146	37	6.1	37	95	0	389	38	11	2	46	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11084021--11084364	123	2.8	124	91	0	564	33	22	15	28	1.94
11085433--11085473	9	4.6	9	84	0	55	41	19	12	26	1.87
11085489--11085551	17	3.5	17	69	12	54	52	12	1	33	1.49
11085480--11085554	37	2.0	37	94	0	132	48	14	2	34	1.58
11085480--11085571	37	2.5	37	87	7	116	48	14	3	33	1.59
11085680--11085786	39	2.8	39	89	1	162	19	2	27	50	1.61
11085783--11085816	13	2.8	12	86	8	50	14	0	44	41	1.45
11085790--11085818	13	2.2	13	100	0	58	13	0	48	37	1.43
11086865--11086908	23	1.9	23	90	0	70	2	31	0	65	1.05
11089668--11090096	108	4.0	107	91	2	662	34	17	16	31	1.93
11093228--11093267	21	1.9	21	84	0	53	27	22	22	27	1.99
11095279--11095317	20	2.0	20	94	0	69	25	30	20	23	1.98
11096987--11097016	15	2.0	15	93	0	51	36	10	6	46	1.64
11097638--11097799	81	2.0	81	82	1	198	14	21	26	37	1.92
11097643--11097816	41	4.3	40	77	4	152	15	23	26	34	1.95
11098302--11098369	14	4.9	14	71	16	61	29	0	29	41	1.57
11101991--11102028	13	2.9	13	100	0	76	23	0	13	63	1.30
11102507--11102559	21	2.5	21	84	9	72	39	1	1	56	1.21
11102676--11102714	20	1.9	21	94	5	71	48	20	0	30	1.50
11102590--11102757	55	3.0	55	75	14	155	49	16	0	34	1.46
11102641--11102757	59	1.9	62	87	5	177	48	16	0	35	1.46
11102793--11103119	9	37.8	9	72	13	222	46	20	1	31	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11102822--11103115	25	11.5	25	72	11	186	46	20	1	31	1.60
11102842--11102952	43	2.6	41	83	10	134	47	21	0	30	1.51
11102840--11103031	105	1.8	105	80	7	228	46	21	1	30	1.58
11102863--11103050	61	3.1	62	84	7	217	45	20	1	32	1.61
11102952--11103095	61	2.4	62	85	9	158	45	18	2	32	1.64
11103056--11103130	34	2.3	32	86	4	96	46	17	1	34	1.56
11109084--11109339	85	3.0	83	83	10	304	24	20	21	33	1.97
11109084--11109336	43	6.0	41	83	7	278	24	20	21	33	1.97
11109108--11109338	128	1.8	128	85	5	333	23	19	21	35	1.96
11110488--11110520	17	2.0	17	88	5	50	18	3	3	75	1.06
11110656--11110703	18	2.5	19	75	25	55	27	2	2	68	1.11
11113827--11113854	5	5.6	5	100	0	56	82	0	0	17	0.68
11114246--11114440	85	2.2	89	82	5	236	37	14	8	38	1.77
11114464--11114501	20	1.9	20	84	10	51	36	18	13	31	1.89
11114591--11114639	21	2.3	21	89	6	73	75	0	4	20	0.96
11114564--11114674	9	11.2	10	71	13	70	67	1	1	28	1.11
11114603--11114674	20	3.7	19	74	10	74	70	1	1	26	1.03
11114603--11114674	10	7.2	11	72	20	52	70	1	1	26	1.03
11114895--11115012	21	5.2	21	75	19	71	60	0	0	38	1.03
11114917--11114983	11	6.4	11	88	11	97	58	0	0	41	0.98
11114895--11114986	21	4.4	22	80	15	97	57	0	0	42	0.98
11114902--11114974	30	2.4	32	88	9	116	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11114929--11115012	21	4.2	20	83	10	82	61	0	1	36	1.04
11115212--11115290	20	3.8	20	78	10	70	29	6	1	63	1.27
11115301--11115345	19	2.5	17	80	13	54	35	2	4	57	1.31
11115307--11115350	19	2.3	19	88	0	61	36	2	4	56	1.32
11115264--11115359	46	2.1	46	80	7	106	30	5	3	61	1.33
11115342--11115421	29	2.8	28	79	11	90	38	3	0	57	1.17
11118808--11118851	22	1.9	24	81	9	56	47	0	11	40	1.39
11119025--11119109	44	1.9	44	92	0	143	38	23	7	30	1.81
11121193--11121226	17	2.0	17	94	0	59	11	55	17	14	1.68
11122446--11122484	14	2.9	14	88	3	53	28	0	10	61	1.28
11122442--11122484	13	3.4	13	84	12	54	30	0	9	60	1.28
11128186--11128619	44	9.8	45	80	3	362	30	16	23	29	1.97
11128186--11128597	89	4.7	89	88	2	499	30	16	23	29	1.96
11128212--11128597	44	8.7	44	82	2	477	31	15	23	29	1.96
11128186--11128619	133	3.3	132	81	3	467	30	16	23	29	1.97
11129205--11129238	17	2.0	17	94	0	59	11	55	17	14	1.68
11133566--11133618	14	3.8	14	80	9	63	28	0	22	49	1.50
11133573--11133617	15	3.1	15	78	12	58	26	0	22	51	1.49
11133559--11133617	28	2.1	27	87	9	84	27	0	20	52	1.47
11133565--11133627	28	2.2	27	83	10	81	26	1	22	49	1.59
11133900--11133955	28	2.0	29	85	3	78	30	1	7	60	1.33
11144540--11144591	26	2.0	26	100	0	104	34	15	19	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11146729--11146781	23	2.3	23	83	3	61	39	15	15	30	1.87
11148914--11148948	5	6.8	5	96	3	61	2	60	37	0	1.12
11152420--11152475	3	18.7	3	89	7	78	37	0	1	60	1.07
11153248--11153339	36	2.5	38	77	10	93	45	1	21	31	1.59
11157007--11157102	41	2.3	41	96	0	174	30	20	26	22	1.99
11157272--11157406	41	3.3	41	91	0	225	28	18	28	24	1.98
11158559--11158623	32	2.0	32	100	0	130	33	18	16	30	1.94
11169782--11169806	12	2.1	12	100	0	50	52	8	0	40	1.31
11171079--11171113	16	2.2	16	90	10	54	45	2	0	51	1.16
11175154--11175191	14	2.6	15	83	8	51	42	15	0	42	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228