genome.fa.s23.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  165  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49571415--49571501	25	3.5	24	74	14	70	21	27	19	31	1.98
49571413--49571518	25	4.2	25	72	10	65	22	26	19	31	1.98
49571611--49571652	21	2.0	22	81	13	52	35	4	19	40	1.72
49572321--49572433	42	2.7	42	87	1	154	23	25	32	18	1.97
49587558--49587595	18	2.1	18	95	0	67	23	26	10	39	1.87
49587847--49587891	21	2.1	21	95	0	81	35	46	15	2	1.58
49591133--49591416	126	2.3	126	86	1	426	29	16	17	36	1.92
49591323--49591495	91	1.9	91	87	2	258	31	18	10	38	1.86
49591557--49591683	34	3.8	33	79	9	150	41	15	0	42	1.47
49593015--49593235	111	2.0	110	98	0	424	33	13	7	45	1.72
49593832--49593900	21	3.3	21	70	8	68	43	0	18	37	1.51
49593820--49593901	42	2.0	42	95	0	146	41	0	20	37	1.53
49599093--49599164	21	3.4	21	69	14	58	44	0	18	37	1.50
49599083--49599162	42	1.9	42	92	0	133	43	0	20	36	1.52
49607756--49607793	16	2.4	16	90	0	58	44	2	0	52	1.14
49608122--49608167	20	2.3	20	80	0	56	36	8	4	50	1.53
49610580--49610635	3	19.0	3	78	10	53	60	3	3	32	1.31
49610555--49610629	18	3.9	18	73	14	53	58	2	8	30	1.41
49610557--49610639	15	5.5	15	72	19	57	60	2	6	31	1.34
49612239--49613427	131	9.1	132	96	0	2009	23	24	22	29	1.99
49612238--49613427	44	27.2	44	73	4	870	23	24	22	30	1.99
49613422--49613807	46	8.6	46	75	9	339	27	23	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49613457--49614035	134	4.3	132	84	6	613	26	23	20	29	1.99
49613391--49614030	44	14.3	43	71	12	341	27	23	20	29	1.98
49615259--49615310	7	7.7	7	80	8	63	13	15	0	71	1.15
49615258--49615310	20	2.7	20	87	0	79	13	15	0	71	1.14
49620977--49621032	3	19.0	3	78	10	53	60	3	3	32	1.31
49620952--49621026	18	3.9	18	73	14	53	58	2	8	30	1.41
49620954--49621036	15	5.5	15	72	19	57	60	2	6	31	1.34
49624780--49625000	90	2.5	88	84	5	284	38	21	8	32	1.83
49625009--49625033	12	2.1	12	100	0	50	76	0	8	16	1.02
49625030--49625074	19	2.4	19	92	7	74	60	0	2	37	1.09
49625363--49625429	10	6.9	10	72	13	50	38	1	0	59	1.06
49625363--49625429	19	3.5	19	76	8	64	38	1	0	59	1.06
49625438--49625483	10	4.6	10	79	17	51	17	4	0	78	0.91
49625438--49625493	10	5.4	11	80	20	50	17	5	0	76	0.96
49625439--49625481	19	2.3	19	92	8	70	18	4	0	76	0.95
49625466--49625493	12	2.3	12	100	0	56	14	7	0	78	0.95
49627774--49627812	18	2.1	18	85	9	51	46	7	0	46	1.31
49627782--49627821	19	2.1	19	86	9	55	45	7	0	47	1.31
49628131--49628168	19	2.0	19	85	10	51	47	10	2	39	1.52
49631147--49631212	23	3.0	23	72	17	59	48	3	7	40	1.47
49631189--49631220	12	2.4	14	85	15	50	43	0	9	46	1.35
49640472--49640540	29	2.4	29	78	9	79	37	10	18	33	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49641224--49641362	32	4.4	32	84	0	172	37	20	21	20	1.95
49641537--49641609	24	3.0	24	75	0	65	41	23	12	23	1.88
49641652--49641827	27	6.5	27	74	1	138	24	18	21	36	1.95
49641635--49641827	81	2.4	81	80	4	194	24	18	20	36	1.95
49641652--49641827	54	3.3	54	77	1	165	24	18	21	36	1.95
49643406--49643746	51	6.7	51	76	9	288	28	16	26	29	1.97
49643406--49643749	102	3.4	101	82	7	394	28	16	26	29	1.97
49650987--49651214	35	6.5	35	75	12	175	24	18	15	42	1.88
49650995--49651190	102	1.9	100	84	5	259	24	17	16	41	1.90
49651033--49651157	67	1.9	66	89	1	196	24	16	17	42	1.88
49655183--49655216	17	1.9	18	88	5	52	17	0	2	79	0.86
49656067--49656156	21	4.3	21	76	8	76	25	34	17	22	1.96
49656090--49656158	21	3.3	21	80	11	79	26	33	20	20	1.97
49656423--49656476	22	2.5	22	93	0	90	22	3	20	53	1.61
49663561--49663597	18	2.1	18	89	0	56	29	8	2	59	1.40
49667720--49668067	51	6.9	51	77	5	314	29	25	14	30	1.95
49667720--49668068	102	3.4	102	86	2	445	30	24	14	30	1.95
49669261--49669411	41	3.7	41	89	0	212	23	24	19	31	1.98
49669197--49669325	67	1.9	68	83	1	170	30	24	19	25	1.98
49675543--49675579	9	4.1	9	85	0	56	29	8	13	48	1.71
49677244--49677277	15	2.5	13	90	9	50	0	14	5	79	0.91
49680227--49680277	23	2.5	20	75	25	52	9	13	0	76	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49680851--49681015	62	2.7	61	80	2	186	19	23	30	26	1.98
49685589--49685633	23	2.0	23	86	8	65	33	11	20	35	1.88
49685824--49685849	5	5.2	5	100	0	52	19	19	23	38	1.93
49691253--49691334	9	8.8	9	73	12	58	25	0	19	54	1.44
49691225--49691334	20	5.8	19	73	18	95	26	0	18	54	1.49
49691225--49691357	46	2.8	46	74	18	128	27	2	16	54	1.54
49691757--49691794	18	2.1	18	85	9	51	42	0	21	36	1.53
49695822--49695850	5	5.8	5	100	0	58	79	0	0	20	0.74
49696783--49696871	25	3.7	25	75	10	96	16	26	23	32	1.96
49696800--49696892	47	2.0	46	87	10	136	18	25	21	34	1.96
49696800--49696892	46	2.0	47	87	10	138	18	25	21	34	1.96
49700478--49700517	21	1.9	21	89	0	62	62	7	25	5	1.42
49700948--49701005	29	2.0	29	83	6	73	25	18	15	39	1.91
49701212--49701292	22	3.6	23	80	12	89	25	30	0	43	1.55
49701265--49701365	40	2.5	41	83	8	125	32	20	0	45	1.58
49703162--49703201	18	2.2	19	90	4	64	22	35	7	35	1.82
49703589--49703871	25	11.7	25	77	13	297	41	1	13	43	1.51
49703614--49703871	70	3.6	70	85	9	385	41	0	13	43	1.49
49703584--49703871	145	2.0	146	95	2	517	42	1	13	43	1.51
49703879--49703922	13	3.4	13	90	0	70	50	22	0	27	1.50
49703948--49704053	13	8.5	13	73	10	69	47	27	0	25	1.53
49703921--49704050	61	2.1	61	91	5	210	46	29	0	23	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49703930--49704075	61	2.5	58	82	11	160	45	27	0	26	1.58
49704035--49704675	33	22.6	27	72	20	353	45	25	0	28	1.56
49704077--49704243	24	6.5	23	73	20	136	45	25	0	28	1.54
49703974--49704676	87	8.2	87	90	5	1026	45	25	0	28	1.56
49704022--49704125	33	2.8	39	72	24	91	46	24	0	28	1.59
49704213--49704648	33	14.9	31	76	17	395	45	26	0	27	1.56
49704241--49704574	25	12.0	24	66	26	89	45	26	0	28	1.54
49703974--49704676	173	4.1	174	88	6	1026	45	25	0	28	1.56
49704622--49704685	23	2.8	23	80	0	74	46	21	1	29	1.61
49704682--49704906	116	1.9	116	88	3	337	37	9	10	41	1.73
49707934--49708286	126	2.8	125	89	0	526	32	22	15	28	1.95
49710999--49711078	39	2.1	39	97	0	151	16	23	13	46	1.83
49712547--49712578	16	2.0	16	93	0	55	21	18	31	28	1.97
49713004--49713050	22	2.1	22	88	0	67	19	34	0	46	1.50
49719994--49720018	12	2.1	12	100	0	50	24	0	0	76	0.80
49722627--49722685	10	5.8	10	76	11	57	67	0	3	28	1.06
49722682--49722754	20	3.7	20	70	18	55	58	5	8	27	1.49
49723159--49723385	87	2.7	84	82	9	255	34	11	20	33	1.89
49723159--49723414	84	3.0	83	80	7	241	34	10	19	34	1.87
49724521--49725399	247	3.6	247	89	2	1286	42	11	14	32	1.81
49728314--49728368	25	2.2	26	80	9	69	36	16	30	16	1.91
49736988--49737152	49	3.3	50	72	13	142	38	22	25	13	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49736988--49737152	24	6.6	26	73	10	139	38	22	25	13	1.90
49741088--49741131	19	2.2	20	88	4	63	72	2	0	25	0.96
49741253--49741327	10	7.7	10	72	11	66	65	4	0	30	1.11
49741253--49741289	18	1.9	18	89	10	56	67	2	0	29	1.04
49741158--49741327	49	3.5	47	78	16	159	61	5	1	31	1.29
49743810--49743850	20	2.0	21	86	9	59	36	14	9	39	1.79
49745102--49745273	50	3.4	52	85	7	214	41	12	13	31	1.82
49747462--49747497	18	2.1	18	89	5	56	16	11	13	58	1.63
49750079--49750160	40	2.0	40	97	0	155	40	18	14	26	1.89
49753503--49753551	25	2.0	25	84	8	64	48	2	26	22	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228