genome.fa.s23.2.7.7.80.10.50.1000.191.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  191  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56654260--56654429	91	1.9	90	88	3	261	35	13	20	31	1.91
56658317--56658351	2	17.5	2	100	0	70	51	48	0	0	1.00
56660630--56660851	27	8.3	27	84	3	279	45	20	15	19	1.86
56660630--56660853	53	4.2	54	84	2	283	45	20	15	19	1.86
56660634--56660851	80	2.7	79	81	6	262	45	20	14	19	1.85
56668943--56668975	11	3.1	11	82	8	50	60	12	18	9	1.57
56677750--56677791	17	2.6	16	85	11	50	28	0	0	71	0.86
56678243--56678294	20	2.6	20	78	6	61	57	1	1	38	1.21
56679804--56679867	22	3.0	22	78	17	64	39	1	1	57	1.17
56688889--56688941	21	2.5	21	90	0	79	32	35	9	22	1.86
56692314--56692357	24	1.9	24	86	9	65	36	11	0	52	1.38
56694316--56694353	3	12.7	3	100	0	76	68	0	0	31	0.90
56696014--56696536	44	12.2	43	71	9	182	27	21	19	31	1.97
56696002--56696163	87	1.9	87	84	2	218	25	23	20	30	1.99
56696232--56696508	83	3.3	83	71	16	280	28	20	19	31	1.97
56696052--56696507	44	10.7	44	70	12	195	27	21	20	31	1.98
56696135--56696509	170	2.2	170	97	0	696	28	21	18	31	1.97
56697653--56697699	21	2.2	21	84	0	58	25	36	10	27	1.89
56698693--56698722	8	3.6	8	95	4	51	13	0	13	73	1.10
56701301--56701349	19	2.5	20	80	6	57	40	12	20	26	1.87
56703721--56703755	3	11.7	3	93	0	61	65	0	2	31	1.07
56707706--56707763	25	2.4	24	82	5	71	41	18	20	18	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56709580--56709615	17	2.1	17	100	0	72	33	27	22	16	1.95
56710011--56710068	29	2.0	30	89	3	91	13	5	24	56	1.57
56711314--56711444	13	10.2	13	77	9	126	37	4	5	52	1.45
56711314--56711444	40	3.4	39	87	7	171	37	4	5	52	1.45
56711314--56711435	27	4.8	26	79	10	108	37	4	4	52	1.45
56711480--56711513	15	2.3	15	100	0	68	41	11	5	41	1.66
56711516--56711551	14	2.6	14	95	0	63	19	11	2	66	1.35
56711202--56711826	328	1.9	326	94	0	1115	37	6	5	51	1.51
56711677--56711772	40	2.4	40	89	3	140	37	3	4	55	1.35
56711642--56711763	27	4.8	26	78	10	99	37	4	4	54	1.39
56711642--56711763	13	9.5	13	77	10	117	37	4	4	54	1.39
56714227--56714272	9	5.1	9	91	0	65	34	13	39	13	1.83
56714657--56714727	19	3.6	19	74	10	70	19	7	16	56	1.63
56714675--56714708	11	3.0	11	91	4	50	14	8	14	61	1.55
56714664--56714737	22	3.5	22	72	23	77	18	5	16	59	1.55
56716093--56716236	21	7.0	21	70	16	104	62	9	8	20	1.50
56716073--56716227	80	1.9	83	85	5	217	63	11	7	18	1.50
56716073--56716236	43	4.0	42	83	8	201	63	10	7	18	1.49
56724514--56724562	24	2.0	24	96	0	89	48	4	12	34	1.59
56726460--56726513	27	1.9	27	85	7	72	20	11	7	61	1.53
56728938--56728980	18	2.4	18	92	0	68	65	0	34	0	0.93
56733009--56733067	6	9.8	6	81	7	66	52	15	5	27	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56733011--56733067	30	1.9	30	92	7	98	50	15	5	28	1.65
56733084--56733150	6	11.2	6	83	0	80	58	14	7	19	1.60
56733616--56733655	21	1.9	21	94	0	71	22	30	20	27	1.98
56735287--56735326	6	6.7	6	94	0	71	32	2	17	47	1.61
56736459--56736519	28	2.2	28	93	0	104	36	16	14	32	1.89
56738165--56738218	28	2.0	25	89	10	81	27	11	5	55	1.57
56739136--56739164	13	2.2	13	100	0	58	34	31	24	10	1.89
56739407--56739470	11	5.7	11	80	9	67	21	28	1	48	1.59
56740616--56740662	7	6.7	7	100	0	94	27	0	14	57	1.38
56741159--56741232	30	2.5	30	75	6	78	31	40	16	12	1.85
56741310--56741352	18	2.4	19	84	7	54	20	30	9	39	1.84
56741865--56741914	21	2.4	21	89	0	82	44	30	0	26	1.55
56741975--56742081	21	5.0	21	85	6	135	43	32	1	21	1.63
56741975--56742064	43	2.1	42	93	2	153	44	33	2	20	1.63
56751492--56751536	23	2.0	23	82	8	56	51	2	2	44	1.26
56751486--56751573	32	2.8	31	81	6	88	51	1	4	43	1.29
56756313--56756389	36	2.1	36	82	0	91	37	5	9	48	1.57
56758254--56758326	10	7.2	10	75	3	56	67	0	31	1	1.00
56758342--56758380	20	2.0	20	100	0	78	20	0	5	74	1.01
56758611--56758850	132	1.8	132	84	3	331	52	8	11	27	1.67
56763517--56763564	20	2.4	20	78	18	55	47	2	6	43	1.40
56765657--56765765	39	2.8	40	87	4	150	36	14	24	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56767806--56767845	18	2.3	18	86	4	55	50	10	15	25	1.74
56777196--56777238	21	2.0	22	82	8	54	25	0	23	51	1.49
56781710--56781751	15	2.7	16	82	14	52	52	2	0	45	1.13
56781719--56781760	15	2.9	15	82	10	52	52	0	0	47	1.00
56781825--56781871	16	3.0	16	78	12	53	51	2	0	46	1.13
56781946--56781991	16	2.9	16	78	12	51	52	2	0	45	1.13
56781946--56782000	15	3.7	15	79	13	53	52	1	0	45	1.11
56781748--56782051	57	5.1	57	66	24	180	49	6	1	42	1.39
56781758--56782065	61	5.1	61	68	14	244	49	6	2	42	1.41
56781708--56782104	120	3.3	120	95	1	715	49	5	2	43	1.36
56786642--56786705	32	2.0	32	100	0	128	46	3	3	46	1.34
56786645--56786699	18	3.3	18	70	19	64	49	3	3	43	1.37
56787441--56787475	18	1.9	18	94	0	61	25	28	5	40	1.78
56787440--56787482	18	2.4	18	84	0	59	25	27	4	41	1.75
56787876--56787997	63	2.0	59	81	9	138	39	4	9	46	1.56
56790416--56790513	23	4.3	23	88	0	142	32	26	20	20	1.97
56790416--56790514	46	2.2	46	90	0	162	32	26	20	21	1.97
56797828--56797949	23	5.3	23	84	0	172	31	25	20	22	1.98
56797835--56797947	46	2.5	46	94	0	190	30	25	21	22	1.98
56800259--56800332	36	2.1	36	84	0	94	44	16	5	33	1.70
56800538--56800657	43	2.8	43	81	12	147	30	28	20	21	1.98
56803140--56803280	43	3.3	43	89	2	221	29	31	19	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56803481--56803540	18	3.4	18	64	13	52	40	10	6	43	1.64
56809510--56809554	7	6.4	7	84	0	63	33	46	0	20	1.51
56809510--56809554	21	2.1	21	92	8	74	33	46	0	20	1.51
56809544--56809656	54	2.1	54	85	5	147	44	23	1	30	1.63
56809833--56809869	14	2.6	14	91	0	65	45	29	0	24	1.53
56810240--56810524	41	7.0	41	95	0	507	27	29	24	18	1.98
56812013--56812785	126	6.2	126	87	1	978	28	17	15	37	1.91
56812016--56812785	251	3.1	250	86	2	1008	28	17	15	38	1.91
56812871--56812976	34	3.2	33	76	7	119	40	11	0	48	1.39
56825354--56825397	6	7.5	6	87	7	56	0	13	0	86	0.57
56828502--56828541	22	1.9	21	85	10	55	62	0	0	37	0.95
56835530--56835568	18	2.0	20	85	9	55	61	5	10	23	1.48
56838441--56838482	21	2.0	21	100	0	84	33	19	0	47	1.49
56838746--56838786	21	2.0	21	85	9	57	43	17	0	39	1.49
56841630--56841741	55	2.0	55	92	0	188	47	14	1	36	1.55
56844049--56844088	20	2.0	20	100	0	80	30	20	10	40	1.85
56848348--56848390	16	2.4	19	88	11	65	25	4	2	67	1.22
56850881--56850921	21	2.0	21	81	18	50	21	26	19	31	1.97
56862359--56862400	18	2.3	19	84	12	52	21	2	2	73	1.06
56862359--56862412	17	3.0	18	78	13	58	22	3	1	72	1.10
56864460--56864490	16	1.9	16	93	0	53	32	3	12	51	1.56
56865872--56865916	23	2.0	23	82	4	56	37	0	2	60	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56871013--56871050	20	2.0	20	90	10	62	18	0	5	76	0.97
56874507--56874644	66	2.1	65	83	5	170	41	19	24	14	1.89
56874933--56875019	42	2.0	43	84	2	113	36	19	18	25	1.94
56874997--56875105	44	2.5	44	83	2	132	24	15	27	32	1.96
56885412--56885453	8	4.7	9	81	18	52	23	0	2	73	0.94
56886763--56886809	24	1.9	24	86	4	67	63	8	2	25	1.34
56886793--56886844	22	2.3	23	86	6	70	46	13	9	30	1.75
56896660--56896825	64	2.6	64	80	4	185	31	10	12	45	1.75
56897095--56897129	15	2.3	15	95	0	61	14	5	20	60	1.54
56926313--56926406	35	2.7	36	73	12	88	64	1	1	32	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228